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Maintainer: [email protected] Last committer: [email protected] Ident: $FreeBSD: head/biology/biojava/Makefile 356092 2014-06-01 10:37:22Z ohauer $ Log URL: http://beefy1.isc.freebsd.org/data/91i386-default/2014-12-31_21h07m50s/logs/biojava-1.7,1.log Build URL: http://beefy1.isc.freebsd.org/build.html?mastername=91i386-default&build=2014-12-31_21h07m50s Log: ====>> Building biology/biojava build started at Thu Jan 1 13:25:43 UTC 2015 port directory: /usr/ports/biology/biojava building for: FreeBSD 91i386-default-job-10 9.1-RELEASE-p19 FreeBSD 9.1-RELEASE-p19 i386 maintained by: [email protected] Makefile ident: $FreeBSD: head/biology/biojava/Makefile 356092 2014-06-01 10:37:22Z ohauer $ Poudriere version: 3.1-pre Host OSVERSION: 1100050 Jail OSVERSION: 901000 ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=901000 UNAME_v=FreeBSD 9.1-RELEASE-p19 UNAME_r=9.1-RELEASE-p19 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/91i386-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=biojava-1.7,1 OLDPWD=/root PWD=/usr/local/poudriere/data/.m/91i386-default/ref/.p/pool MASTERNAME=91i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for biojava-1.7,1: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- CLASSPATH="/usr/local/share/java/classes" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/biojava/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/biojava/work HOME=/wrkdirs/usr/ports/biology/biojava/work TMPDIR="/tmp" JAVA_HOME=/usr/local/openjdk7 NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=9.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biojava" EXAMPLESDIR="share/examples/biojava" DATADIR="share/biojava" WWWDIR="www/biojava" ETCDIR="etc/biojava" --End PLIST_SUB-- --SUB_LIST-- JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="1.6+" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biojava DOCSDIR=/usr/local/share/doc/biojava EXAMPLESDIR=/usr/local/share/examples/biojava WWWDIR=/usr/local/www/biojava ETCDIR=/usr/local/etc/biojava --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel # clean-restricted via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> biojava-1.7,1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.4.3.txz [91i386-default-job-10] Installing pkg-1.4.3... [91i386-default-job-10] Extracting pkg-1.4.3... done Message for pkg-1.4.3: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of biojava-1.7,1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by biojava-1.7,1 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by biojava-1.7,1 for building => SHA256 Checksum OK for biojava-1.7-all.jar. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by biojava-1.7,1 for building ===> Extracting for biojava-1.7,1 => SHA256 Checksum OK for biojava-1.7-all.jar. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for biojava-1.7,1 =========================================================================== =======================<phase: build-depends >============================ ===> biojava-1.7,1 depends on file: /usr/local/openjdk7/bin/java - not found ===> Verifying install for /usr/local/openjdk7/bin/java in /usr/ports/java/openjdk7 ===> Installing existing package /packages/All/openjdk-7.71.14_1,1.txz [91i386-default-job-10] Installing openjdk-7.71.14_1,1... [91i386-default-job-10] `-- Installing alsa-lib-1.0.28... [91i386-default-job-10] `-- Extracting alsa-lib-1.0.28... done [91i386-default-job-10] `-- Installing dejavu-2.34_4... [91i386-default-job-10] `-- Extracting dejavu-2.34_4... done [91i386-default-job-10] `-- Installing fontconfig-2.11.1,1... [91i386-default-job-10] | `-- Installing expat-2.1.0_2... [91i386-default-job-10] | `-- Extracting expat-2.1.0_2... done [91i386-default-job-10] | `-- Installing freetype2-2.5.4_1... [91i386-default-job-10] | `-- Extracting freetype2-2.5.4_1... done [91i386-default-job-10] `-- Extracting fontconfig-2.11.1,1... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /usr/local/lib/X11/fonts/dejavu: caching, new cache contents: 21 fonts, 0 dirs /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory Re-scanning /usr/local/lib/X11/fonts: caching, new cache contents: 0 fonts, 1 dirs /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded [91i386-default-job-10] `-- Installing java-zoneinfo-2014.j... [91i386-default-job-10] `-- Extracting java-zoneinfo-2014.j... done [91i386-default-job-10] `-- Installing javavmwrapper-2.5... [91i386-default-job-10] `-- Extracting javavmwrapper-2.5... done [91i386-default-job-10] `-- Installing libX11-1.6.2_2,1... [91i386-default-job-10] | `-- Installing kbproto-1.0.6... [91i386-default-job-10] | `-- Extracting kbproto-1.0.6... done [91i386-default-job-10] | `-- Installing libXau-1.0.8_2... [91i386-default-job-10] | | `-- Installing xproto-7.0.26... [91i386-default-job-10] | | `-- Extracting xproto-7.0.26... done [91i386-default-job-10] | `-- Extracting libXau-1.0.8_2... done [91i386-default-job-10] | `-- Installing libXdmcp-1.1.1_2... [91i386-default-job-10] | `-- Extracting libXdmcp-1.1.1_2... done [91i386-default-job-10] | `-- Installing libxcb-1.11... [91i386-default-job-10] | | `-- Installing libpthread-stubs-0.3_6... [91i386-default-job-10] | | `-- Extracting libpthread-stubs-0.3_6... done [91i386-default-job-10] | | `-- Installing libxml2-2.9.2_2... [91i386-default-job-10] | | `-- Installing libiconv-1.14_6... [91i386-default-job-10] | | `-- Extracting libiconv-1.14_6... done [91i386-default-job-10] | | `-- Extracting libxml2-2.9.2_2... done [91i386-default-job-10] | `-- Extracting libxcb-1.11... done [91i386-default-job-10] `-- Extracting libX11-1.6.2_2,1... done [91i386-default-job-10] `-- Installing libXext-1.3.3,1... [91i386-default-job-10] | `-- Installing xextproto-7.3.0... [91i386-default-job-10] | `-- Extracting xextproto-7.3.0... done [91i386-default-job-10] `-- Extracting libXext-1.3.3,1... done [91i386-default-job-10] `-- Installing libXi-1.7.4,1... [91i386-default-job-10] | `-- Installing inputproto-2.3.1... [91i386-default-job-10] | `-- Extracting inputproto-2.3.1... done [91i386-default-job-10] | `-- Installing libXfixes-5.0.1_2... [91i386-default-job-10] | | `-- Installing fixesproto-5.0... [91i386-default-job-10] | | `-- Extracting fixesproto-5.0... done [91i386-default-job-10] | `-- Extracting libXfixes-5.0.1_2... done [91i386-default-job-10] `-- Extracting libXi-1.7.4,1... done [91i386-default-job-10] `-- Installing libXrender-0.9.8_2... [91i386-default-job-10] | `-- Installing renderproto-0.11.1... [91i386-default-job-10] | `-- Extracting renderproto-0.11.1... done [91i386-default-job-10] `-- Extracting libXrender-0.9.8_2... done [91i386-default-job-10] `-- Installing libXt-1.1.4_2,1... [91i386-default-job-10] | `-- Installing libSM-1.2.2_2,1... [91i386-default-job-10] | | `-- Installing libICE-1.0.9,1... [91i386-default-job-10] | | `-- Extracting libICE-1.0.9,1... done [91i386-default-job-10] | `-- Extracting libSM-1.2.2_2,1... done [91i386-default-job-10] `-- Extracting libXt-1.1.4_2,1... done [91i386-default-job-10] `-- Installing libXtst-1.2.2_2... [91i386-default-job-10] | `-- Installing recordproto-1.14.2... [91i386-default-job-10] | `-- Extracting recordproto-1.14.2... done [91i386-default-job-10] `-- Extracting libXtst-1.2.2_2... done [91i386-default-job-10] Extracting openjdk-7.71.14_1,1... done Message for dejavu-2.34_4: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/lib/X11/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message for openjdk-7.71.14_1,1: ====================================================================== This OpenJDK implementation requires fdescfs(5) mounted on /dev/fd and procfs(5) mounted on /proc for some functionality. If you have not done it yet, please do the following: mount -t fdescfs fdesc /dev/fd mount -t procfs proc /proc To make it permanent, you need the following lines in /etc/fstab: fdesc /dev/fd fdescfs rw 0 0 proc /proc procfs rw 0 0 ====================================================================== ===> Returning to build of biojava-1.7,1 ===> biojava-1.7,1 depends on file: /usr/local/bin/ant - not found ===> Verifying install for /usr/local/bin/ant in /usr/ports/devel/apache-ant ===> Installing existing package /packages/All/apache-ant-1.9.4.txz [91i386-default-job-10] Installing apache-ant-1.9.4... [91i386-default-job-10] Extracting apache-ant-1.9.4... done ===> Returning to build of biojava-1.7,1 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for biojava-1.7,1 =========================================================================== =======================<phase: build >============================ ===> Building for biojava-1.7,1 Buildfile: /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/build.xml init: [echo] Building biojava-1.7 [echo] Java Home: /usr/local/openjdk7/jre [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: ${sqlDriver.hsqldb} [echo] XSLT support: true prepare: [mkdir] Created dir: /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/ant-build [copy] Copying 10 files to /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/ant-build prepare-biojava: [mkdir] Created dir: /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/ant-build/classes/biojava [mkdir] Created dir: /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/ant-build/docs/biojava [mkdir] Created dir: /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/ant-build/docs/check/biojava compile-biojava: [javac] /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/build.xml:246: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 1462 source files to /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/ant-build/classes/biojava [javac] warning: [options] bootstrap class path not set in conjunction with -source 1.5 [javac] [javac] [javac] The system is out of resources. [javac] Consult the following stack trace for details. [javac] java.lang.OutOfMemoryError: Java heap space [javac] at com.sun.tools.javac.util.Position$LineMapImpl.build(Position.java:153) [javac] at com.sun.tools.javac.util.Position.makeLineMap(Position.java:77) [javac] at com.sun.tools.javac.parser.Scanner.getLineMap(Scanner.java:1147) [javac] at com.sun.tools.javac.parser.JavacParser.parseCompilationUnit(JavacParser.java:2310) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:595) [javac] at com.sun.tools.javac.main.JavaCompiler.parse(JavaCompiler.java:632) [javac] at com.sun.tools.javac.main.JavaCompiler.parseFiles(JavaCompiler.java:909) [javac] at com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:824) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:439) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:353) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:342) [javac] at com.sun.tools.javac.main.Main.compile(Main.java:333) [javac] at com.sun.tools.javac.Main.compile(Main.java:76) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [javac] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:57) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.taskdefs.compilers.Javac13.execute(Javac13.java:56) [javac] at org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1159) [javac] at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:935) [javac] at org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292) [javac] at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source) [javac] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) [javac] at java.lang.reflect.Method.invoke(Method.java:606) [javac] at org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106) [javac] at org.apache.tools.ant.Task.perform(Task.java:348) [javac] at org.apache.tools.ant.Target.execute(Target.java:435) [javac] at org.apache.tools.ant.Target.performTasks(Target.java:456) [javac] at org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393) [javac] at org.apache.tools.ant.Project.executeTarget(Project.java:1364) [javac] at org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41) [javac] at org.apache.tools.ant.Project.executeTargets(Project.java:1248) BUILD FAILED /wrkdirs/usr/ports/biology/biojava/work/biojava-1.7/build.xml:246: Compile failed; see the compiler error output for details. Total time: 8 seconds *** [do-build] Error code 1 Stop in /usr/ports/biology/biojava. _______________________________________________ [email protected] mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "[email protected]"
