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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy18/data/main-amd64-default/p96a5483c708f_s77934b7a13/logs/py39-PySCeS-1.0.3.log Build URL: https://pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p96a5483c708f_s77934b7a13 Log: =>> Building biology/py-PySCeS build started at Tue Feb 7 18:43:20 UTC 2023 port directory: /usr/ports/biology/py-PySCeS package name: py39-PySCeS-1.0.3 building for: FreeBSD main-amd64-default-job-11 14.0-CURRENT FreeBSD 14.0-CURRENT 1400078 amd64 maintained by: [email protected] Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1400078 Job Id: 11 !!! Jail is newer than host. (Jail: 1400078, Host: 1400073) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/sh OSVERSION=1400078 UNAME_v=FreeBSD 14.0-CURRENT 1400078 UNAME_r=14.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/main-amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=main-amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/main-amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py39 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py39 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" PYTHON="/usr/local/bin/python3.9" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran12" F90="gfortran12" FC="gfortran12" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc12" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc12" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.cache HOME=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/ local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -lpython3.9 -shared -Wl,-rpath=/usr/local/lib/gcc12 -L/usr/local/lib/gcc12 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.9 PYTHON_LIBDIR=lib/python3.9 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.9/site-packages PYTHON_SUFFIX=39 PYTHON_EXT_SUFFIX=.cpython-39 PYTHON_VER=3.9 PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/PySCeS" EXAMPLESDIR="share/examples/PySCeS" DATADIR="share/PySCeS" WWWDIR="www/PySCeS" ETCDIR="etc/PySCeS" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/PySCeS DOCSDIR=/usr/local/share/doc/PySCeS EXAMPLESDIR=/usr/local/share/examples/PySCeS WWWDIR=/usr/local/www/PySCeS ETCDIR=/usr/local/etc/PySCeS --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 14.0.5 (https://github.com/llvm/llvm-project.git llvmorg-14.0.5-0-gc12386ae247c) Target: x86_64-unknown-freebsd14.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=14.0-CURRENT OSREL=14.0 OSVERSION=1400078 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py39-PySCeS-1.0.3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.1.pkg [main-amd64-default-job-11] Installing pkg-1.19.1... [main-amd64-default-job-11] Extracting pkg-1.19.1: .......... done ===> py39-PySCeS-1.0.3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py39-PySCeS-1.0.3 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PySCeS-1.0.3 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PySCeS-1.0.3 for building => SHA256 Checksum OK for pysces-1.0.3.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py39-PySCeS-1.0.3 for building ===> Extracting for py39-PySCeS-1.0.3 => SHA256 Checksum OK for pysces-1.0.3.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py39-PySCeS-1.0.3 =========================================================================== =======================<phase: build-depends >============================ ===> py39-PySCeS-1.0.3 depends on package: py39-scikit-build>0 - not found ===> Installing existing package /packages/All/py39-scikit-build-0.16.6.pkg [main-amd64-default-job-11] Installing py39-scikit-build-0.16.6... [main-amd64-default-job-11] `-- Installing py39-distro-1.8.0... [main-amd64-default-job-11] | `-- Installing py39-setuptools-63.1.0... <snip> -------------------------------- -- Trying 'Unix Makefiles' generator - success -------------------------------------------------------------------------------- Configuring Project Working directory: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-build Command: /usr/local/bin/cmake /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3 -G 'Unix Makefiles' -DCMAKE_INSTALL_PREFIX:PATH=/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-install -DPYTHON_VERSION_STRING:STRING=3.9.16 -DSKBUILD:INTERNAL=TRUE -DCMAKE_MODULE_PATH:PATH=/usr/local/lib/python3.9/site-packages/skbuild/resources/cmake -DPYTHON_EXECUTABLE:PATH=/usr/local/bin/python3.9 -DPYTHON_INCLUDE_DIR:PATH=/usr/local/include/python3.9 -DPYTHON_LIBRARY:PATH=/usr/local/lib/libpython3.9.so -DPython_EXECUTABLE:PATH=/usr/local/bin/python3.9 -DPython_ROOT_DIR:PATH=/usr/local -DPython_INCLUDE_DIR:PATH=/usr/local/include/python3.9 -DPython_FIND_REGISTRY:STRING=NEVER -DPython_NumPy_INCLUDE_DIRS:PATH=/usr/local/lib/python3.9/site-packages/numpy/core/include -DPython3_EXECUTABLE:PATH=/usr/local/bin/python3.9 -DPython3_ROOT_DIR:PATH=/usr/local -DPython3_INCLUDE_DIR:PATH=/usr/local/include/python3.9 -DPython3_FIND_REGISTRY:STRING=NEVE R -DPython3_NumPy_INCLUDE_DIRS:PATH=/usr/local/lib/python3.9/site-packages/numpy/core/include -DCMAKE_BUILD_TYPE:STRING=Release -- The C compiler identification is Clang 14.0.5 -- The CXX compiler identification is Clang 14.0.5 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - failed -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - failed -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PythonInterp: /usr/local/bin/python3.9 (found version "3.9.16") -- Found PythonLibs: /usr/local/lib/libpython3.9.so (found version "3.9.16") -- Found NumPy: /usr/local/lib/python3.9/site-packages/numpy/core/include (found version "1.23.5") -- Found F2PY: /usr/local/bin/f2py3 (found version "1.23.5") -- F2PY included from: /usr/local/lib/python3.9/site-packages/numpy/f2py/src -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: Python3_EXECUTABLE Python3_FIND_REGISTRY Python3_INCLUDE_DIR Python3_NumPy_INCLUDE_DIRS Python3_ROOT_DIR Python_EXECUTABLE Python_FIND_REGISTRY Python_INCLUDE_DIR Python_NumPy_INCLUDE_DIRS Python_ROOT_DIR SKBUILD -- Build files have been written to: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-build [ 25%] Building C object CMakeFiles/_f2py_runtime_library.dir/usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c.o In file included from /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c:2: In file included from /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h:13: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/arrayobject.h:5: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarrayobject.h:12: In file included from /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/ndarraytypes.h:1948: /usr/local/lib/python3.9/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it with " \ ^ 1 warning generated. [ 50%] Linking C static library lib_f2py_runtime_library.a [ 50%] Built target _f2py_runtime_library [ 75%] Generating nleq2.cpython-39.so running build running config_cc INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options running config_fc INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options running build_src INFO: build_src INFO: building extension "nleq2" sources creating f2py_build creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9 creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2 INFO: f2py options: [] INFO: f2py: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/pysces/nleq2/nleq2.pyf append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'int' append_needs: unknown need 'double' append_needs: unknown need 'double' append_needs: unknown need 'int' Reading fortran codes... Reading file '/wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/pysces/nleq2/nleq2.pyf' (format:free) Post-processing... Block: nleq2__user__routines Block: nleq2_user_interface Block: fcn Block: jac Block: nleq2 Block: nleq2 Block: nleq2 In: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/pysces/nleq2/nleq2.pyf:nleq2:nleq2:nleq2 get_useparameters: no module nleq2__user__routines info used by nleq2 Post-processing (stage 2)... Building modules... Constructing call-back function "cb_fcn_in_nleq2__user__routines" def fcn(x,ifail,[n]): return f,ifail Constructing call-back function "cb_jac_in_nleq2__user__routines" def jac(x,[n,m1]): return a Building module "nleq2"... Generating possibly empty wrappers" Maybe empty "nleq2-f2pywrappers.f" Constructing wrapper function "nleq2"... x,xscal,rtol,iopt,ierr = nleq2(fcn,jac,x,xscal,rtol,iopt,iwk,rwk,[n,liwk,lrwk,fcn_extra_args,jac_extra_args]) Wrote C/API module "nleq2" to file "f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2/nleq2module.c" INFO: adding 'f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2/fortranobject.c' to sources. INFO: adding 'f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2' to include_dirs. creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9 creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces creating f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2 copying /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.c -> f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2 copying /usr/local/lib/python3.9/site-packages/numpy/f2py/src/fortranobject.h -> f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2 INFO: adding 'f2py_build/src.freebsd-14.0-CURRENT-amd64-3.9/pysces/nleq2/nleq2-f2pywrappers.f' to sources. INFO: build_src: building npy-pkg config files /usr/local/lib/python3.9/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. warnings.warn( running build_ext INFO: customize UnixCCompiler Traceback (most recent call last): File "/usr/local/bin/f2py3", line 33, in <module> sys.exit(load_entry_point('numpy==1.23.5', 'console_scripts', 'f2py3')()) File "/usr/local/lib/python3.9/site-packages/numpy/f2py/f2py2e.py", line 704, in main run_compile() File "/usr/local/lib/python3.9/site-packages/numpy/f2py/f2py2e.py", line 671, in run_compile setup(ext_modules=[ext]) File "/usr/local/lib/python3.9/site-packages/numpy/distutils/core.py", line 169, in setup return old_setup(**new_attr) File "/usr/local/lib/python3.9/site-packages/setuptools/__init__.py", line 87, in setup return distutils.core.setup(**attrs) File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 177, in setup return run_commands(dist) File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/core.py", line 193, in run_commands dist.run_commands() File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 968, in run_commands self.run_command(cmd) File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command super().run_command(command) File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 987, in run_command cmd_obj.run() File "/usr/local/lib/python3.9/site-packages/numpy/distutils/command/build.py", line 62, in run old_build.run(self) File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/command/build.py", line 131, in run self.run_command(cmd_name) File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/cmd.py", line 317, in run_command self.distribution.run_command(command) File "/usr/local/lib/python3.9/site-packages/setuptools/dist.py", line 1217, in run_command super().run_command(command) File "/usr/local/lib/python3.9/site-packages/setuptools/_distutils/dist.py", line 987, in run_command cmd_obj.run() File "/usr/local/lib/python3.9/site-packages/numpy/distutils/command/build_ext.py", line 139, in run self.compiler.customize(self.distribution) File "/usr/local/lib/python3.9/site-packages/numpy/distutils/ccompiler.py", line 89, in <lambda> m = lambda self, *args, **kw: func(self, *args, **kw) File "/usr/local/lib/python3.9/site-packages/numpy/distutils/ccompiler.py", line 540, in CCompiler_customize self.compile([fn], output_dir=tmpdir, File "/usr/local/lib/python3.9/site-packages/numpy/distutils/ccompiler.py", line 89, in <lambda> m = lambda self, *args, **kw: func(self, *args, **kw) File "/usr/local/lib/python3.9/site-packages/numpy/distutils/ccompiler.py", line 272, in CCompiler_compile jobs = get_num_build_jobs() File "/usr/local/lib/python3.9/site-packages/numpy/distutils/misc_util.py", line 93, in get_num_build_jobs cpu_count = len(os.sched_getaffinity(0)) OverflowError: could not allocate a large enough CPU set *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-build *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-build *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-build Traceback (most recent call last): File "/usr/local/lib/python3.9/site-packages/skbuild/setuptools_wrap.py", line 649, in setup cmkr.make(make_args, install_target=cmake_install_target, env=env) File "/usr/local/lib/python3.9/site-packages/skbuild/cmaker.py", line 686, in make self.make_impl(clargs=clargs, config=config, source_dir=source_dir, install_target=install_target, env=env) File "/usr/local/lib/python3.9/site-packages/skbuild/cmaker.py", line 717, in make_impl raise SKBuildError( An error occurred while building with CMake. Command: /usr/local/bin/cmake --build . --target install --config Release -- Install target: install Source directory: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3 Working directory: /wrkdirs/usr/ports/biology/py-PySCeS/work-py39/pysces-1.0.3/_skbuild/freebsd-14.0-CURRENT-amd64-3.9/cmake-build Please check the install target is valid and see CMake's output for more information. *** Error code 1 Stop. make: stopped in /usr/ports/biology/py-PySCeS
