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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/ampere1/data/131releng-armv7-quarterly/604744931878/logs/jalview-2.11.2.5.log Build URL: https://pkg-status.freebsd.org/ampere1/build.html?mastername=131releng-armv7-quarterly&build=604744931878 Log: =>> Building biology/jalview build started at Mon Feb 20 23:09:51 UTC 2023 port directory: /usr/ports/biology/jalview package name: jalview-2.11.2.5 building for: FreeBSD 131releng-armv7-quarterly-job-06 13.1-RELEASE-p6 FreeBSD 13.1-RELEASE-p6 1301000 arm maintained by: [email protected] Makefile ident: Poudriere version: 3.2.8-23-ga7f8d188 Host OSVERSION: 1400073 Jail OSVERSION: 1301000 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1301000 UNAME_v=FreeBSD 13.1-RELEASE-p6 1301000 UNAME_r=13.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-23-ga7f8d188 MASTERMNT=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=131releng-armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/131releng-armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/jalview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/jalview/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/jalview/work/.cache HOME=/wrkdirs/usr/ports/biology/jalview/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/jalview/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/jalview/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="inst all -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- JAVASHAREDIR="share/java" JAVAJARDIR="share/java/classes" OSREL=13.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/jalview" EXAMPLESDIR="share/examples/jalview" DATADIR="share/java/jalview" WWWDIR="www/jalview" ETCDIR="etc/jalview" --End PLIST_SUB-- --SUB_LIST-- JAVA=/usr/local/openjdk11/bin/java JAVASHAREDIR="/usr/local/share/java" JAVAJARDIR="/usr/local/share/java/classes" JAVALIBDIR="/usr/local/share/java/classes" JAVA_VERSION="11" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/java/jalview DOCSDIR=/usr/local/share/doc/jalview EXAMPLESDIR=/usr/local/share/examples/jalview WWWDIR=/usr/local/www/jalview ETCDIR=/usr/local/etc/jalview --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 ([email protected]:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 13.0.0 ([email protected]:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_53255a77=yes CC_OUTPUT_921dbbb2_911cfe02=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes CC_OUTPUT_921dbbb2_af59ad06=yes CC_OUTPUT_921dbbb2_a15f3fcf=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 13.0.0 ([email protected]:llvm/llvm-project.git llvmorg-13.0.0-0-gd7b669b3a303) Target: armv7-unknown-freebsd13.1-gnueabihf Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.1-RELEASE-p6 OSREL=13.1 OSVERSION=1301000 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> jalview-2.11.2.5 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.19.0.pkg [131releng-armv7-quarterly-job-06] Installing pkg-1.19.0... [131releng-armv7-quarterly-job-06] Extracting pkg-1.19.0: .......... done ===> jalview-2.11.2.5 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of jalview-2.11.2.5 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.2.5 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.2.5 for building => SHA256 Checksum OK for jalview_2_11_2_5.tar.gz. => SHA256 Checksum OK for jalview-2.11.2.5-deps.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by jalview-2.11.2.5 for building ===> Extracting for jalview-2.11.2.5 => SHA256 Checksum OK for jalview_2_11_2_5.tar.gz. => SHA256 Checksum OK for jalview-2.11.2.5-deps.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for jalview-2.11.2.5 =========================================================================== =======================<phase: build-depends >============================ ===> jalview-2.11.2.5 depends on executable: gradle - not found ===> Installing existing package /packages/All/gradle-7.6.pkg [131releng-armv7-quarterly-job-06] Installing gradle-7.6... [131releng-armv7-quarterly-job-06] `-- Installing openjdk8-8.352.08.1_1... [131releng-armv7-quarterly-job-06] | `-- Installing alsa-lib-1.2.2_1... [131releng-armv7-quarterly-job-06] | `-- Extracting alsa-lib-1.2.2_1: .......... done [131releng-armv7-quarterly-job-06] | `-- Installing dejavu-2.37_1... [131releng-armv7-quarterly-job-06] | | `-- Installing fontconfig-2.14.0,1... [131releng-armv7-quarterly-job-06] | | `-- Installing expat-2.5.0... [131releng-armv7-quarterly-job-06] | | `-- Extracting expat-2.5.0: .......... done [131releng-armv7-quarterly-job-06] | | `-- Installing freetype2-2.12.1_2... [131releng-armv7-quarterly-job-06] | | | `-- Installing brotli-1.0.9,1... [131releng-armv7-quarterly-job-06] | | | `-- Extracting brotli-1.0.9,1: .......... done [131releng-armv7-quarterly-job-06] | | | `-- Installing png-1.6.39... <snip> Welcome to Gradle 7.6! Here are the highlights of this release: - Added support for Java 19. - Introduced `--rerun` flag for individual task rerun. - Improved dependency block for test suites to be strongly typed. - Added a pluggable system for Java toolchains provisioning. For more details see https://docs.gradle.org/7.6/release-notes.html Starting a Gradle Daemon (subsequent builds will be faster) > Configure project : Using properties from file './utils/channels/default/channel_gradle.properties' JALVIEW_VERSION is set to '2.11.2.5' HEADLESS BUILD J2S ENABLED Not in a git repository. Using git values from RELEASE properties file. Using a LOCAL profile. > Task :copyHelp > Task :buildIndices > Task :copyResources > Task :copyChannelResources > Task :createBuildProperties Execution optimizations have been disabled for task ':createBuildProperties' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/resources_build'. Reason: Task ':createBuildProperties' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. > Task :buildResources > Task :copyDocs > Task :convertMdFiles Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/README-DMG_creation.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/README-DMG_background_image_creation.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/building.html Creating /wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build/doc/releaseprocess.html > Task :releasesTemplates Execution optimizations have been disabled for task ':releasesTemplates' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build/help/html/releases.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build/help/html/whatsNew.html'. Reason: Task ':buildIndices' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. > Task :prepare > Task :compileJava Setting target compatibility to 11 Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. > Task :processResources Execution optimizations have been disabled for task ':processResources' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyChannelResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':copyResources' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/resources_build'. Reason: Task ':processResources' uses this output of task ':createBuildProperties' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/doc_build'. Reason: Task ':processResources' uses this output of task ':copyDocs' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':copyHelp' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':releasesTemplates' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/build/resources/help_build'. Reason: Task ':processResources' uses this output of task ':buildIndices' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. > Task :classes > Task :cleanPackageDir UP-TO-DATE > Task :compileLinkCheck Execution optimizations have been disabled for task ':compileLinkCheck' to ensure correctness due to the following reasons: - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/utils'. Reason: Task ':copyChannelResources' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. - Gradle detected a problem with the following location: '/wrkdirs/usr/ports/biology/jalview/work/jalview/utils'. Reason: Task ':convertMdFiles' uses this output of task ':compileLinkCheck' without declaring an explicit or implicit dependency. This can lead to incorrect results being produced, depending on what order the tasks are executed. Please refer to https://docs.gradle.org/7.6/userguide/validation_problems.html#implicit_dependency for more details about this problem. compiler message file broken: key=compiler.misc.msg.bug arguments=11.0.17, {1}, {2}, {3}, {4}, {5}, {6}, {7} java.lang.NullPointerException at jdk.compiler/com.sun.tools.javac.util.UnsharedNameTable.fromUtf(UnsharedNameTable.java:107) at jdk.compiler/com.sun.tools.javac.util.Names.fromUtf(Names.java:398) at jdk.compiler/com.sun.tools.javac.jvm.ClassReader.readPool(ClassReader.java:469) at jdk.compiler/com.sun.tools.javac.jvm.ClassReader.readName(ClassReader.java:592) at jdk.compiler/com.sun.tools.javac.jvm.ClassReader.readMethod(ClassReader.java:2416) at jdk.compiler/com.sun.tools.javac.jvm.ClassReader.readClass(ClassReader.java:2739) at jdk.compiler/com.sun.tools.javac.jvm.ClassReader.readClassBuffer(ClassReader.java:2811) at jdk.compiler/com.sun.tools.javac.jvm.ClassReader.readClassFile(ClassReader.java:2824) at jdk.compiler/com.sun.tools.javac.code.ClassFinder.fillIn(ClassFinder.java:359) at jdk.compiler/com.sun.tools.javac.code.ClassFinder.complete(ClassFinder.java:291) at jdk.compiler/com.sun.tools.javac.code.Symtab$1.complete(Symtab.java:305) at jdk.compiler/com.sun.tools.javac.code.Symbol.complete(Symbol.java:642) at jdk.compiler/com.sun.tools.javac.code.Symbol$ClassSymbol.complete(Symbol.java:1326) at jdk.compiler/com.sun.tools.javac.code.Symbol$ClassSymbol.members(Symbol.java:1264) at jdk.compiler/com.sun.tools.javac.comp.Resolve.findMethod(Resolve.java:1803) at jdk.compiler/com.sun.tools.javac.comp.Resolve.findMethod(Resolve.java:1776) at jdk.compiler/com.sun.tools.javac.comp.Resolve$10.doLookup(Resolve.java:2654) at jdk.compiler/com.sun.tools.javac.comp.Resolve$BasicLookupHelper.lookup(Resolve.java:3293) at jdk.compiler/com.sun.tools.javac.comp.Resolve.lookupMethod(Resolve.java:3543) at jdk.compiler/com.sun.tools.javac.comp.Resolve.resolveQualifiedMethod(Resolve.java:2651) at jdk.compiler/com.sun.tools.javac.comp.Resolve.resolveInternalMethod(Resolve.java:2733) at jdk.compiler/com.sun.tools.javac.jvm.StringConcat$IndyConstants.doCall(StringConcat.java:489) at jdk.compiler/com.sun.tools.javac.jvm.StringConcat$IndyConstants.emit(StringConcat.java:449) at jdk.compiler/com.sun.tools.javac.jvm.StringConcat$Indy.makeConcat(StringConcat.java:273) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitBinary(Gen.java:1935) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCBinary.accept(JCTree.java:2009) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genExpr(Gen.java:819) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genArgs(Gen.java:838) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitApply(Gen.java:1663) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCMethodInvocation.accept(JCTree.java:1650) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genExpr(Gen.java:819) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitExec(Gen.java:1594) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCExpressionStatement.accept(JCTree.java:1468) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genDef(Gen.java:597) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:632) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:618) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStats(Gen.java:669) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitBlock(Gen.java:1031) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCBlock.accept(JCTree.java:1036) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genDef(Gen.java:597) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:632) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:618) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitIf(Gen.java:1568) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCIf.accept(JCTree.java:1437) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genDef(Gen.java:597) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:632) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:618) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStats(Gen.java:669) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitBlock(Gen.java:1031) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCBlock.accept(JCTree.java:1036) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genDef(Gen.java:597) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genStat(Gen.java:632) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genMethod(Gen.java:903) at jdk.compiler/com.sun.tools.javac.jvm.Gen.visitMethodDef(Gen.java:866) at jdk.compiler/com.sun.tools.javac.tree.JCTree$JCMethodDecl.accept(JCTree.java:866) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genDef(Gen.java:597) at jdk.compiler/com.sun.tools.javac.jvm.Gen.genClass(Gen.java:2202) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.genCode(JavaCompiler.java:756) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.generate(JavaCompiler.java:1631) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.generate(JavaCompiler.java:1599) at jdk.compiler/com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:973) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.lambda$doCall$0(JavacTaskImpl.java:104) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.handleExceptions(JavacTaskImpl.java:147) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.doCall(JavacTaskImpl.java:100) at jdk.compiler/com.sun.tools.javac.api.JavacTaskImpl.call(JavacTaskImpl.java:94) at org.gradle.internal.compiler.java.IncrementalCompileTask.call(IncrementalCompileTask.java:89) at org.gradle.api.internal.tasks.compile.AnnotationProcessingCompileTask.call(AnnotationProcessingCompileTask.java:94) at org.gradle.api.internal.tasks.compile.ResourceCleaningCompilationTask.call(ResourceCleaningCompilationTask.java:57) at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:54) at org.gradle.api.internal.tasks.compile.JdkJavaCompiler.execute(JdkJavaCompiler.java:39) at org.gradle.api.internal.tasks.compile.daemon.AbstractDaemonCompiler$CompilerWorkAction.execute(AbstractDaemonCompiler.java:135) at org.gradle.workers.internal.DefaultWorkerServer.execute(DefaultWorkerServer.java:63) at org.gradle.workers.internal.AbstractClassLoaderWorker$1.create(AbstractClassLoaderWorker.java:49) at org.gradle.workers.internal.AbstractClassLoaderWorker$1.create(AbstractClassLoaderWorker.java:43) at org.gradle.internal.classloader.ClassLoaderUtils.executeInClassloader(ClassLoaderUtils.java:100) at org.gradle.workers.internal.AbstractClassLoaderWorker.executeInClassLoader(AbstractClassLoaderWorker.java:43) at org.gradle.workers.internal.FlatClassLoaderWorker.run(FlatClassLoaderWorker.java:32) at org.gradle.workers.internal.FlatClassLoaderWorker.run(FlatClassLoaderWorker.java:22) at org.gradle.workers.internal.WorkerDaemonServer.run(WorkerDaemonServer.java:87) at org.gradle.workers.internal.WorkerDaemonServer.run(WorkerDaemonServer.java:56) at org.gradle.process.internal.worker.request.WorkerAction$1.call(WorkerAction.java:138) at org.gradle.process.internal.worker.child.WorkerLogEventListener.withWorkerLoggingProtocol(WorkerLogEventListener.java:41) at org.gradle.process.internal.worker.request.WorkerAction.run(WorkerAction.java:135) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:36) at org.gradle.internal.dispatch.ReflectionDispatch.dispatch(ReflectionDispatch.java:24) at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:182) at org.gradle.internal.remote.internal.hub.MessageHubBackedObjectConnection$DispatchWrapper.dispatch(MessageHubBackedObjectConnection.java:164) at org.gradle.internal.remote.internal.hub.MessageHub$Handler.run(MessageHub.java:414) at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:64) at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:49) at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) at java.base/java.lang.Thread.run(Thread.java:829) > Task :compileLinkCheck FAILED FAILURE: Build failed with an exception. * What went wrong: Execution failed for task ':compileLinkCheck'. > Compilation failed; see the compiler error output for details. * Try: > Run with --stacktrace option to get the stack trace. > Run with --info or --debug option to get more log output. > Run with --scan to get full insights. * Get more help at https://help.gradle.org Deprecated Gradle features were used in this build, making it incompatible with Gradle 8.0. You can use '--warning-mode all' to show the individual deprecation warnings and determine if they come from your own scripts or plugins. See https://docs.gradle.org/7.6/userguide/command_line_interface.html#sec:command_line_warnings Execution optimizations have been disabled for 4 invalid unit(s) of work during this build to ensure correctness. Please consult deprecation warnings for more details. BUILD FAILED in 2m 34s 12 actionable tasks: 11 executed, 1 up-to-date *** Error code 1 Stop. make: stopped in /usr/ports/biology/jalview
