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Maintainer: h2+fbsdpo...@fsfe.org Last committer: da...@freebsd.org Ident: $FreeBSD: head/biology/ugene/Makefile 381974 2015-03-23 01:44:43Z danfe $ Log URL: http://beefy6.nyi.freebsd.org/data/101amd64-default/383446/logs/ugene-1.16.1.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=383446 Log: ====>> Building biology/ugene build started at Tue Apr 7 00:54:22 UTC 2015 port directory: /usr/ports/biology/ugene building for: FreeBSD 101amd64-default-job-21 10.1-RELEASE-p8 FreeBSD 10.1-RELEASE-p8 amd64 maintained by: h2+fbsdpo...@fsfe.org Makefile ident: $FreeBSD: head/biology/ugene/Makefile 381974 2015-03-23 01:44:43Z danfe $ Poudriere version: 3.1.3 Host OSVERSION: 1100064 Jail OSVERSION: 1001000 ---Begin Environment--- OSVERSION=1001000 UNAME_v=FreeBSD 10.1-RELEASE-p8 UNAME_r=10.1-RELEASE-p8 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ugene-1.16.1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool MASTERNAME=101amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1.3 LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for ugene-1.16.1: DOCS=on: Install official UGENE documentation (PDF) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --with-qt-includes=/usr/local/include/qt4 --with-qt-libraries=/usr/local/lib/qt4 --with-extra-includes=/usr/local/include --with-extra-libs=/usr/local/lib --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4" MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" UIC="/usr/local/bin/uic-qt4" QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(c++ --version)"; case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- QT_PREFIX="/usr/local" QT_BINDIR="bin" QT_INCDIR="include/qt4" QT_LIBDIR="lib/qt4" QT_ARCHDIR="lib/qt4/qt4" QT_PLUGINDIR="lib/qt4/plugins" QT_LIBEXECDIR="libexec/qt4" QT_IMPORTDIR="lib/qt4/imports" QT_QMLDIR="lib/qt4/qt4/qml" QT_DATADIR="share/qt4" QT_DOCDIR="share/doc/qt4" QT_L10NDIR="share/qt4/translations" QT_ETCDIR="etc/xdg" QT_EXAMPLEDIR="share/examples/qt4" QT_TESTDIR="share/qt4/tests" QT_MKSPECDIR="share/qt4/mkspecs" NOX64="@comment " SSE2="" OSREL=10.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" DOCSDIR="share/ugene/manuals" EXAMPLESDIR="share/examples/ugene" DATADIR="share/ugene" WWWDIR="www/ugene" ETCDIR="etc/ugene" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ugene DOCSDIR=/usr/local/share/ugene/manuals EXAMPLESDIR=/usr/local/share/examples/ugene WWWDIR=/usr/local/www/ugene ETCDIR=/usr/local/etc/ugene --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ugene-1.16.1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.4.12.txz [101amd64-default-job-21] Installing pkg-1.4.12... [101amd64-default-job-21] Extracting pkg-1.4.12... done Message for pkg-1.4.12: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of ugene-1.16.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.16.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.16.1 for building => SHA256 Checksum OK for ugene/ugene-1.16.1.tar.gz. => SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf. => SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf. => SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by ugene-1.16.1 for building ===> Extracting for ugene-1.16.1 => SHA256 Checksum OK for ugene/ugene-1.16.1.tar.gz. => SHA256 Checksum OK for ugene/QueryDesigner_UserManual.pdf. => SHA256 Checksum OK for ugene/UniproUGENE_UserManual.pdf. => SHA256 Checksum OK for ugene/WorkflowDesigner_UserManual.pdf. /bin/cp -p /portdistfiles/ugene/*.pdf /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1/data/manuals =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ugene-1.16.1 =========================================================================== =======================<phase: build-depends >============================ ===> ugene-1.16.1 depends on file: /usr/local/libdata/pkgconfig/glproto.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in /usr/ports/x11/glproto ===> Installing existing package /packages/All/glproto-1.4.17.txz [101amd64-default-job-21] Installing glproto-1.4.17... [101amd64-default-job-21] Extracting glproto-1.4.17... done ===> Returning to build of ugene-1.16.1 ===> ugene-1.16.1 depends on file: /usr/local/libdata/pkgconfig/dri2proto.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in /usr/ports/x11/dri2proto ===> Installing existing package /packages/All/dri2proto-2.8.txz [101amd64-default-job-21] Installing dri2proto-2.8... [101amd64-default-job-21] Extracting dri2proto-2.8... done ===> Returning to build of ugene-1.16.1 ===> ugene-1.16.1 depends on file: /usr/local/libdata/pkgconfig/xtst.pc - not found ===> Verifying install for /usr/local/libdata/pkgconfig/xtst.pc in /usr/ports/x11/libXtst ===> Installing existing package /packages/All/libXtst-1.2.2_2.txz [101amd64-default-job-21] Installing libXtst-1.2.2_2... [101amd64-default-job-21] `-- Installing inputproto-2.3.1... [101amd64-default-job-21] `-- Extracting inputproto-2.3.1... done [101amd64-default-job-21] `-- Installing libX11-1.6.2_2,1... [101amd64-default-job-21] | `-- Installing kbproto-1.0.6... [101amd64-default-job-21] | `-- Extracting kbproto-1.0.6... done [101amd64-default-job-21] | `-- Installing libXau-1.0.8_2... [101amd64-default-job-21] | | `-- Installing xproto-7.0.26... [101amd64-default-job-21] | | `-- Extracting xproto-7.0.26... done [101amd64-default-job-21] | `-- Extracting libXau-1.0.8_2... done [101amd64-default-job-21] | `-- Installing libXdmcp-1.1.1_2... [101amd64-default-job-21] | `-- Extracting libXdmcp-1.1.1_2... done [101amd64-default-job-21] | `-- Installing libxcb-1.11... [101amd64-default-job-21] | | `-- Installing libpthread-stubs-0.3_6... [101amd64-default-job-21] | | `-- Extracting libpthread-stubs-0.3_6... done [101amd64-default-job-21] | | `-- Installing libxml2-2.9.2_2... [101amd64-default-job-21] | | `-- Extracting libxml2-2.9.2_2... done [101amd64-default-job-21] | `-- Extracting libxcb-1.11... done [101amd64-default-job-21] `-- Extracting libX11-1.6.2_2,1... done [101amd64-default-job-21] `-- Installing libXext-1.3.3,1... [101amd64-default-job-21] | `-- Installing xextproto-7.3.0... [101amd64-default-job-21] | `-- Extracting xextproto-7.3.0... done [101amd64-default-job-21] `-- Extracting libXext-1.3.3,1... done [101amd64-default-job-21] `-- Installing libXi-1.7.4,1... [101amd64-default-job-21] | `-- Installing libXfixes-5.0.1_2... [101amd64-default-job-21] | | `-- Installing fixesproto-5.0... [101amd64-default-job-21] | | `-- Extracting fixesproto-5.0... done [101amd64-default-job-21] | `-- Extracting libXfixes-5.0.1_2... done [101amd64-default-job-21] `-- Extracting libXi-1.7.4,1... done [101amd64-default-job-21] `-- Installing recordproto-1.14.2... <snip> In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1: In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28: ./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual] virtual void ensureVisible( const Annotation &a, int locationIdx ); ^ ./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &') virtual void ensureVisible( const AnnotationData &a, ^ In file included from src/tests/common_scenarios/msa_editor/edit/GTTestsMSAEditorEdit.cpp:44: src/runnables/ugene/corelibs/U2Gui/util/RenameSequenceFiller.h:32:98: warning: reference 'os' is not yet bound to a value when used here [-Wuninitialized] RenameSequenceFiller(U2OpStatus &_os, QString _newName, QString _oldName = QString()):Filler(os, ""),os(_os), newName(_newName), oldName(_oldName){} ^ 8 warnings generated. c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.16.1 -DUGENE_MIN_VERSION_SQLITE=1.13.0 -DUGENE_MIN_VERSION_MYSQL=1.16.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=16 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -I../../corelibs/U2View/_tmp -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTTestsMSAE ditorOverview.o src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp:22: In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h:24: In file included from ../../include/U2Test/GUITestBase.h:1: In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:4: In file included from ../../include/U2Core/global.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/global.h:28: In file included from /usr/local/include/qt4/QtCore/QVariantMap:1: In file included from /usr/local/include/qt4/QtCore/qvariant.h:48: /usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register int id = qMetaTypeId<T>(); ^~~~~~~~~ In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp:22: In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h:24: In file included from ../../include/U2Test/GUITestBase.h:1: In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:5: In file included from ../../include/U2Core/Task.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/Task.h:26: In file included from ../../include/U2Core/Log.h:1: In file included from ../../include/U2Core/../../corelibs/U2Core/src/globals/Log.h:29: In file included from /usr/local/include/qt4/QtCore/QTime:1: In file included from /usr/local/include/qt4/QtCore/qdatetime.h:47: In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50: /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register int tmp = o->strongref; ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = static_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = const_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = qobject_cast<X *>(src.data()); ^~~~~~~~~ In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.cpp:22: In file included from src/tests/common_scenarios/msa_editor/overview/GTTestsMSAEditorOverview.h:24: In file included from ../../include/U2Test/GUITestBase.h:1: In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:10: In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1: In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28: ./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual] virtual void ensureVisible( const Annotation &a, int locationIdx ); ^ ./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &') virtual void ensureVisible( const AnnotationData &a, ^ 7 warnings generated. c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.16.1 -DUGENE_MIN_VERSION_SQLITE=1.13.0 -DUGENE_MIN_VERSION_MYSQL=1.16.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=16 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -I../../corelibs/U2View/_tmp -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTTestsAnno tations.o src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp:22: In file included from /usr/local/include/qt4/QtGui/QTreeWidget:1: In file included from /usr/local/include/qt4/QtGui/qtreewidget.h:45: In file included from /usr/local/include/qt4/QtGui/qtreeview.h:45: In file included from /usr/local/include/qt4/QtGui/qabstractitemview.h:45: In file included from /usr/local/include/qt4/QtGui/qabstractscrollarea.h:45: In file included from /usr/local/include/qt4/QtGui/qframe.h:45: In file included from /usr/local/include/qt4/QtGui/qwidget.h:50: In file included from /usr/local/include/qt4/QtGui/qpalette.h:47: In file included from /usr/local/include/qt4/QtGui/qbrush.h:53: In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49: In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50: /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register int tmp = o->strongref; ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = static_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = const_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = qobject_cast<X *>(src.data()); ^~~~~~~~~ In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp:22: In file included from /usr/local/include/qt4/QtGui/QTreeWidget:1: In file included from /usr/local/include/qt4/QtGui/qtreewidget.h:45: In file included from /usr/local/include/qt4/QtGui/qtreeview.h:45: In file included from /usr/local/include/qt4/QtGui/qabstractitemview.h:46: In file included from /usr/local/include/qt4/QtCore/qabstractitemmodel.h:45: In file included from /usr/local/include/qt4/QtCore/qvariant.h:48: /usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register int id = qMetaTypeId<T>(); ^~~~~~~~~ In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.cpp:24: In file included from src/tests/common_scenarios/annotations/GTTestsAnnotations.h:25: In file included from ../../include/U2Test/GUITestBase.h:1: In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:10: In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1: In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28: ./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual] virtual void ensureVisible( const Annotation &a, int locationIdx ); ^ ./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &') virtual void ensureVisible( const AnnotationData &a, ^ 7 warnings generated. c++ -c -O2 -pipe -fstack-protector -fno-strict-aliasing -std=c++11 -pthread -D_THREAD_SAFE -Wall -W -fPIC -DU2_DISTRIBUTION_INFO=sources -DUGENE_VERSION=1.16.1 -DUGENE_MIN_VERSION_SQLITE=1.13.0 -DUGENE_MIN_VERSION_MYSQL=1.16.0 -DUGENE_VER_MAJOR=1 -DUGENE_VER_MINOR=16 -DUGENE_VER_PATCH=1 -DUGENE_X86_64 -DUGENE_DATA_DIR=\"/usr/local/share/ugene\" -DQT_DLL -DNDEBUG -DQT_NO_DEBUG -DQT_WEBKIT_LIB -DQT_TESTLIB_LIB -DQT_SCRIPT_LIB -DQT_SVG_LIB -DQT_XML_LIB -DQT_GUI_LIB -DQT_NETWORK_LIB -DQT_CORE_LIB -DQT_SHARED -I/usr/local/share/qt4/mkspecs/freebsd-clang -I. -I/usr/local/include/qt4/QtCore -I/usr/local/include/qt4/QtNetwork -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtXml -I/usr/local/include/qt4/QtSvg -I/usr/local/include/qt4/QtScript -I/usr/local/include/qt4/QtTest -I/usr/local/include/qt4/QtWebKit -I/usr/local/include/qt4 -I../../corelibs/U2View/_tmp -Isrc -I_tmp -I../../include -I_tmp/moc/release -I/usr/local/include/qt4 -I/usr/local/include -o _tmp/obj/release/GTTestsCrea teAnnotationWidget.o src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:23: In file included from /usr/local/include/qt4/QtCore/QAbstractItemModel:1: In file included from /usr/local/include/qt4/QtCore/qabstractitemmodel.h:45: In file included from /usr/local/include/qt4/QtCore/qvariant.h:48: /usr/local/include/qt4/QtCore/qmetatype.h:256:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register int id = qMetaTypeId<T>(); ^~~~~~~~~ In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:24: In file included from /usr/local/include/qt4/QtGui/QListWidget:1: In file included from /usr/local/include/qt4/QtGui/qlistwidget.h:45: In file included from /usr/local/include/qt4/QtGui/qlistview.h:45: In file included from /usr/local/include/qt4/QtGui/qabstractitemview.h:45: In file included from /usr/local/include/qt4/QtGui/qabstractscrollarea.h:45: In file included from /usr/local/include/qt4/QtGui/qframe.h:45: In file included from /usr/local/include/qt4/QtGui/qwidget.h:50: In file included from /usr/local/include/qt4/QtGui/qpalette.h:47: In file included from /usr/local/include/qt4/QtGui/qbrush.h:53: In file included from /usr/local/include/qt4/QtGui/qpixmap.h:49: In file included from /usr/local/include/qt4/QtCore/qsharedpointer.h:50: /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:435:17: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register int tmp = o->strongref; ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:822:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = static_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:834:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = dynamic_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:848:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = const_cast<X *>(src.data()); // if you get an error in this line, the cast is invalid ^~~~~~~~~ /usr/local/include/qt4/QtCore/qsharedpointer_impl.h:868:5: warning: 'register' storage class specifier is deprecated [-Wdeprecated-register] register X *ptr = qobject_cast<X *>(src.data()); ^~~~~~~~~ In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:27: In file included from src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.h:25: In file included from ../../include/U2Test/GUITestBase.h:1: In file included from ../../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:10: In file included from ../../include/U2View/ADVSingleSequenceWidget.h:1: In file included from ../../include/U2View/../../corelibs/U2View/src/ov_sequence/ADVSingleSequenceWidget.h:28: ./../include/U2View/../../corelibs/U2View/src/ov_sequence/PanView.h:130:18: warning: 'U2::PanView::ensureVisible' hides overloaded virtual function [-Woverloaded-virtual] virtual void ensureVisible( const Annotation &a, int locationIdx ); ^ ./../include/U2View/../../corelibs/U2View/src/ov_sequence/GSequenceLineViewAnnotated.h:72:45: note: hidden overloaded virtual function 'U2::GSequenceLineViewAnnotated::ensureVisible' declared here: type mismatch at 1st parameter ('const U2::AnnotationData &' vs 'const U2::Annotation &') virtual void ensureVisible( const AnnotationData &a, ^ src/tests/common_scenarios/annotations/GTTestsCreateAnnotationWidget.cpp:3089:1: warning: unused parameter 'os' [-Wunused-parameter] GUI_TEST_CLASS_DEFINITION(test_0040) { ^ ./../include/U2Test/../../corelibs/U2Test/src/gui_tests/GUITestBase.h:46:37: note: expanded from macro 'GUI_TEST_CLASS_DEFINITION' void className::run(U2OpStatus &os) ^ c++: error: unable to execute command: Killed c++: error: clang frontend command failed due to signal (use -v to see invocation) FreeBSD clang version 3.4.1 (tags/RELEASE_34/dot1-final 208032) 20140512 Target: x86_64-unknown-freebsd10.1 Thread model: posix c++: note: diagnostic msg: PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. c++: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: c++: note: diagnostic msg: /tmp/GTTestsCreateAnnotationWidget-d3894f.cpp c++: note: diagnostic msg: /tmp/GTTestsCreateAnnotationWidget-d3894f.sh c++: note: diagnostic msg: ******************** *** Error code 254 Stop. make[3]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1/src/plugins/GUITestBase *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1/src/plugins/GUITestBase *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/ugene/work/ugene-1.16.1 *** Error code 1 Stop. make: stopped in /usr/ports/biology/ugene _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
