You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Log URL:        
https://pkg-status.freebsd.org/beefy19/data/140i386-quarterly/d848d1eb8f47/logs/py39-MACS3-3.0.1.log
Build URL:      
https://pkg-status.freebsd.org/beefy19/build.html?mastername=140i386-quarterly&build=d848d1eb8f47
Log:

=>> Building biology/py-macs3
build started at Tue Apr 23 01:10:17 UTC 2024
port directory: /usr/ports/biology/py-macs3
package name: py39-MACS3-3.0.1
building for: FreeBSD 140i386-quarterly-job-06 14.0-RELEASE-p6 FreeBSD 
14.0-RELEASE-p6 i386
maintained by: j...@freebsd.org
Makefile datestamp: -rw-r--r--  1 root wheel 1640 Apr  8 19:19 
/usr/ports/biology/py-macs3/Makefile
Ports top last git commit: d848d1eb8
Ports top unclean checkout: no
Port dir last git commit: b3aa1ea86
Port dir unclean checkout: no
Poudriere version: poudriere-git-3.4.1-30-g79e3edcd
Host OSVERSION: 1500014
Jail OSVERSION: 1400097
Job Id: 06

---Begin Environment---
SHELL=/bin/sh
BLOCKSIZE=K
MAIL=/var/mail/root
MM_CHARSET=UTF-8
LANG=C.UTF-8
OSVERSION=1400097
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
MAKE_OBJDIR_CHECK_WRITABLE=0
UNAME_m=i386
UNAME_p=i386
UNAME_r=14.0-RELEASE-p6
LOCALBASE=/usr/local
UNAME_v=FreeBSD 14.0-RELEASE-p6
USER=root
POUDRIERE_NAME=poudriere-git
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.4.1-30-g79e3edcd
MASTERMNT=/usr/local/poudriere/data/.m/140i386-quarterly/ref
LC_COLLATE=C
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
OUTPUT_REDIRECTED_STDERR=4
OUTPUT_REDIRECTED=1
PWD=/usr/local/poudriere/data/.m/140i386-quarterly/06/.p
OUTPUT_REDIRECTED_STDOUT=3
P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS
MASTERNAME=140i386-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
SCRIPTNAME=bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/140i386-quarterly/ref/.p/pool
POUDRIERE_PKGNAME=poudriere-git-3.4.1-30-g79e3edcd
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py39
MAKE_ARGS= FLAVOR=py39
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  
PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.9" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.cache  
HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local"
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39  
XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.cache  
HOME=/wrkdirs/usr/ports/biology/py-macs3/work-py39 TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 
PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/py-macs3/work-py39/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig
 MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing "  
CPP="cpp" CPPFLAGS="-isystem /usr/local/include"  LDFLAGS=" 
-fstack-protector-strong " LIBS="-L/usr/local/lib"  CXX="c++" CXXFLAGS="-O2 
-pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
 -
isystem /usr/local/include " BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python3.9  PYTHON_LIBDIR=lib/python3.9  
PYTHON_PLATFORM=freebsd14  PYTHON_SITELIBDIR=lib/python3.9/site-packages  
PYTHON_SUFFIX=39  PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  
PYTHON_VERSION=python3.9 PYTHON2="@comment " PYTHON3="" OSREL=14.0 PREFIX=%D 
LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.36.3  
PERL_VER=5.36  PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.36 DOCSDIR="share/doc/py39-MACS3"  
EXAMPLESDIR="share/examples/py39-MACS3"  DATADIR="share/py39-MACS3"  
WWWDIR="www/py39-MACS3"  ETCDIR="etc/py39-MACS3"
--End PLIST_SUB--

--SUB_LIST--
PYTHON_INCLUDEDIR=/usr/local/include/python3.9  
PYTHON_LIBDIR=/usr/local/lib/python3.9  PYTHON_PLATFORM=freebsd14  
PYTHON_SITELIBDIR=/usr/local/lib/python3.9/site-packages  PYTHON_SUFFIX=39  
PYTHON_EXT_SUFFIX=.cpython-39  PYTHON_VER=3.9  PYTHON_VERSION=python3.9 
PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local  
DATADIR=/usr/local/share/py39-MACS3 DOCSDIR=/usr/local/share/doc/py39-MACS3 
EXAMPLESDIR=/usr/local/share/examples/py39-MACS3  
WWWDIR=/usr/local/www/py39-MACS3 ETCDIR=/usr/local/etc/py39-MACS3
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
####  ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs
MAKE_JOBS_NUMBER=3
#### Misc Poudriere ####
include "/etc/make.conf.ports_env"
GID=0
UID=0
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  8192
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-MACS3-3.0.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.21.2.pkg
[140i386-quarterly-job-06] Installing pkg-1.21.2...
[140i386-quarterly-job-06] Extracting pkg-1.21.2: .......... done
===>   py39-MACS3-3.0.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py39-MACS3-3.0.1
===========================================================================
=======================<phase: fetch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: fetch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-MACS3-3.0.1 for building
===========================================================================
=======================<phase: checksum       >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-MACS3-3.0.1 for building
=> SHA256 Checksum OK for macs3-project-MACS-v3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: extract        >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py39-MACS3-3.0.1 for building
===>  Extracting for py39-MACS3-3.0.1
=> SHA256 Checksum OK for macs3-project-MACS-v3.0.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: patch          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Patching for py39-MACS3-3.0.1
===>  Applying FreeBSD patches for py39-MACS3-3.0.1 from 
/usr/ports/biology/py-macs3/files
===========================================================================
=======================<phase: build-depends  >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===>   py39-MACS3-3.0.1 depends on package: py39-wheel>0 - not found
===>   Installing existing package /packages/All/py39-wheel-0.43.0.pkg
[140i386-quarterly-job-06] Installing py39-wheel-0.43.0...
[140i386-quarterly-job-06] `-- Installing python39-3.9.18_2...
[140i386-quarterly-job-06] |   `-- Installing gettext-runtime-0.22.5...
[140i386-quarterly-job-06] |   | `-- Installing indexinfo-0.3.1...
[140i386-quarterly-job-06] |   | `-- Extracting indexinfo-0.3.1: .... done
[140i386-quarterly-job-06] |   `-- Extracting gettext-runtime-0.22.5: 
.......... done
[140i386-quarterly-job-06] |   `-- Installing libffi-3.4.4_1...
[140i386-quarterly-job-06] |   `-- Extracting libffi-3.4.4_1: .......... done
[140i386-quarterly-job-06] |   `-- Installing mpdecimal-4.0.0...
[140i386-quarterly-job-06] |   `-- Extracting mpdecimal-4.0.0: .......... done
[140i386-quarterly-job-06] |   `-- Installing readline-8.2.10...
[140i386-quarterly-job-06] |   `-- Extracting readline-8.2.10: .......... done
[140i386-quarterly-job-06] `-- Extracting python39-3.9.18_2: .......... done
[140i386-quarterly-job-06] Extracting py39-wheel-0.43.0: .......... done
=====
Message from python39-3.9.18_2:

--
Note that some standard Python modules are provided as separate ports
<snip>
[140i386-quarterly-job-06] `-- Extracting py39-pyproject_hooks-1.0.0_2: 
.......... done
[140i386-quarterly-job-06] Extracting py39-build-1.2.1: .......... done
===>   py39-MACS3-3.0.1 depends on package: py39-build>=0 - found
===>   Returning to build of py39-MACS3-3.0.1
===>   py39-MACS3-3.0.1 depends on package: py39-installer>=0 - not found
===>   Installing existing package /packages/All/py39-installer-0.7.0.pkg
[140i386-quarterly-job-06] Installing py39-installer-0.7.0...
[140i386-quarterly-job-06] Extracting py39-installer-0.7.0: .......... done
===>   py39-MACS3-3.0.1 depends on package: py39-installer>=0 - found
===>   Returning to build of py39-MACS3-3.0.1
===========================================================================
=======================<phase: lib-depends    >============================
===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0
===========================================================================
=======================<phase: configure      >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Configuring for py39-MACS3-3.0.1
===========================================================================
=======================<phase: build          >============================
===== env: NO_DEPENDS=yes USER=root UID=0 GID=0
===>  Building for py39-MACS3-3.0.1
* Getting build dependencies for wheel...
Compiling MACS3/Signal/HMMR_EM.pyx because it changed.
Compiling MACS3/Signal/HMMR_Signal_Processing.pyx because it changed.
Compiling MACS3/Signal/HMMR_HMM.pyx because it changed.
Compiling MACS3/Signal/Prob.pyx because it changed.
Compiling MACS3/Signal/Region.pyx because it changed.
Compiling MACS3/Signal/Pileup.pyx because it changed.
Compiling MACS3/Signal/PileupV2.pyx because it changed.
Compiling MACS3/Signal/PeakModel.pyx because it changed.
Compiling MACS3/Signal/PeakDetect.pyx because it changed.
Compiling MACS3/Signal/SignalProcessing.pyx because it changed.
Compiling MACS3/Signal/FixWidthTrack.pyx because it changed.
Compiling MACS3/Signal/PairedEndTrack.pyx because it changed.
Compiling MACS3/Signal/BedGraph.pyx because it changed.
Compiling MACS3/Signal/ScoreTrack.pyx because it changed.
Compiling MACS3/Signal/CallPeakUnit.pyx because it changed.
Compiling MACS3/Signal/VariantStat.pyx because it changed.
Compiling MACS3/Signal/ReadAlignment.pyx because it changed.
Compiling MACS3/Signal/RACollection.pyx because it changed.
Compiling MACS3/Signal/UnitigRACollection.pyx because it changed.
Compiling MACS3/Signal/PosReadsInfo.pyx because it changed.
Compiling MACS3/Signal/PeakVariants.pyx because it changed.
Compiling MACS3/IO/Parser.pyx because it changed.
Compiling MACS3/IO/PeakIO.pyx because it changed.
Compiling MACS3/IO/BedGraphIO.pyx because it changed.
Compiling MACS3/IO/BAM.pyx because it changed.
[ 1/25] Cythonizing MACS3/IO/BAM.pyx
[ 2/25] Cythonizing MACS3/IO/BedGraphIO.pyx
[ 3/25] Cythonizing MACS3/IO/Parser.pyx
[ 4/25] Cythonizing MACS3/IO/PeakIO.pyx
[ 5/25] Cythonizing MACS3/Signal/BedGraph.pyx
[ 6/25] Cythonizing MACS3/Signal/CallPeakUnit.pyx
[ 7/25] Cythonizing MACS3/Signal/FixWidthTrack.pyx
[ 8/25] Cythonizing MACS3/Signal/HMMR_EM.pyx
[ 9/25] Cythonizing MACS3/Signal/HMMR_HMM.pyx
[10/25] Cythonizing MACS3/Signal/HMMR_Signal_Processing.pyx
[11/25] Cythonizing MACS3/Signal/PairedEndTrack.pyx
[12/25] Cythonizing MACS3/Signal/PeakDetect.pyx
[13/25] Cythonizing MACS3/Signal/PeakModel.pyx
[14/25] Cythonizing MACS3/Signal/PeakVariants.pyx
[15/25] Cythonizing MACS3/Signal/Pileup.pyx
[16/25] Cythonizing MACS3/Signal/PileupV2.pyx
[17/25] Cythonizing MACS3/Signal/PosReadsInfo.pyx
[18/25] Cythonizing MACS3/Signal/Prob.pyx
[19/25] Cythonizing MACS3/Signal/RACollection.pyx
[20/25] Cythonizing MACS3/Signal/ReadAlignment.pyx
[21/25] Cythonizing MACS3/Signal/Region.pyx
[22/25] Cythonizing MACS3/Signal/ScoreTrack.pyx
[23/25] Cythonizing MACS3/Signal/SignalProcessing.pyx
[24/25] Cythonizing MACS3/Signal/UnitigRACollection.pyx
[25/25] Cythonizing MACS3/Signal/VariantStat.pyx
running egg_info
creating MACS3.egg-info
writing MACS3.egg-info/PKG-INFO
writing dependency_links to MACS3.egg-info/dependency_links.txt
writing requirements to MACS3.egg-info/requires.txt
writing top-level names to MACS3.egg-info/top_level.txt
writing manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest file 'MACS3.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'make_docker_base.sh'
warning: no previously-included files matching '*.h' found under directory 
'MACS3'
warning: no previously-included files matching '.ipynb_checkpoints/*' found 
anywhere in distribution
adding license file 'LICENSE'
writing manifest file 'MACS3.egg-info/SOURCES.txt'
* Building wheel...
running bdist_wheel
running build
running build_py
creating build
creating build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39
creating build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3
copying MACS3/__init__.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3
creating build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/IO
copying MACS3/IO/OutputWriter.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/IO
copying MACS3/IO/__init__.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/IO
creating build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal
copying MACS3/Signal/__init__.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal
creating build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgcmp_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/callpeak_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/filterdup_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/__init__.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/diffpeak_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgopt_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgpeakcall_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/predictd_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/randsample_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/refinepeak_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/cmbreps_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgbroadcall_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/bdgdiff_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/pileup_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/hmmratac_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
copying MACS3/Commands/callvar_cmd.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Commands
creating build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/OptValidator.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/Logger.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/Constants.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Utilities
copying MACS3/Utilities/__init__.py -> 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Utilities
running build_ext
building 'MACS3.Signal.HMMR_EM' extension
creating build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39
creating build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3
creating build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
-fstack-protector-strong -fno-strict-aliasing -O2 -pipe 
-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing 
-isystem /usr/local/include -fPIC 
-I/usr/local/lib/python3.9/site-packages/numpy/core/include 
-I/usr/local/include/python3.9 -c MACS3/Signal/HMMR_EM.c -o 
build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_EM.o -w 
-Ofast -g0
cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
-O2 -pipe -fstack-protector-strong -isystem /usr/local/include 
-fno-strict-aliasing -isystem /usr/local/include 
build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_EM.o 
-L/usr/local/lib -lm -o 
build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_EM.cpython-39.so
building 'MACS3.Signal.HMMR_Signal_Processing' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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-I/usr/local/include/python3.9 -c MACS3/Signal/HMMR_Signal_Processing.c -o 
build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_Signal_Processing.o
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_Signal_Processing.o
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_Signal_Processing.cpython-39.so
building 'MACS3.Signal.HMMR_HMM' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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-I/usr/local/include/python3.9 -c MACS3/Signal/HMMR_HMM.c -o 
build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_HMM.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_HMM.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/HMMR_HMM.cpython-39.so
building 'MACS3.Signal.Prob' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Prob.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Prob.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Prob.cpython-39.so
building 'MACS3.Signal.Region' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Region.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Region.cpython-39.so
building 'MACS3.Signal.Pileup' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Pileup.o -w 
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cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/cPosValCalculation.o
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/cPosValCalculation.o
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/Pileup.cpython-39.so
building 'MACS3.Signal.PileupV2' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PileupV2.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PileupV2.cpython-39.so
building 'MACS3.Signal.PeakModel' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PeakModel.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PeakModel.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PeakModel.cpython-39.so
building 'MACS3.Signal.PeakDetect' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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MACS3/Signal/PeakDetect.c -o 
build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PeakDetect.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PeakDetect.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PeakDetect.cpython-39.so
building 'MACS3.Signal.SignalProcessing' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/SignalProcessing.o
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/SignalProcessing.o
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/SignalProcessing.cpython-39.so
building 'MACS3.Signal.FixWidthTrack' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/FixWidthTrack.o 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/FixWidthTrack.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/FixWidthTrack.cpython-39.so
building 'MACS3.Signal.PairedEndTrack' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PairedEndTrack.o
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PairedEndTrack.o
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/PairedEndTrack.cpython-39.so
building 'MACS3.Signal.BedGraph' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/BedGraph.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/BedGraph.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/BedGraph.cpython-39.so
building 'MACS3.Signal.ScoreTrack' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/ScoreTrack.o -w 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/ScoreTrack.cpython-39.so
building 'MACS3.Signal.CallPeakUnit' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/CallPeakUnit.o 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/CallPeakUnit.cpython-39.so
building 'MACS3.Signal.VariantStat' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/VariantStat.o 
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cc -shared -L/usr/local/lib -fstack-protector-strong -fstack-protector-strong 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/VariantStat.cpython-39.so
building 'MACS3.Signal.ReadAlignment' extension
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/ReadAlignment.o 
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build/lib.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/ReadAlignment.cpython-39.so
building 'MACS3.Signal.RACollection' extension
creating build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/fermi-lite
cc -Wno-unused-result -Wsign-compare -Wunreachable-code -DNDEBUG -O2 -pipe 
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build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/Signal/RACollection.o 
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-isystem /usr/local/include -fPIC -IMACS3/Signal 
-I/usr/local/lib/python3.9/site-packages/numpy/core/include -I./ 
-I./MACS3/fermi-lite/ -I./MACS3/Signal/ -I/usr/local/include/python3.9 -c 
MACS3/fermi-lite/ksw.c -o 
build/temp.freebsd-14.0-RELEASE-p6-i386-cpython-39/MACS3/fermi-lite/ksw.o -w 
-Ofast -g0 -std=gnu99 -DUSE_SIMDE -DSIMDE_ENABLE_NATIVE_ALIASES -fopenmp-simd 
-DSIMDE_ENABLE_OPENMP
In file included from MACS3/fermi-lite/ksw.c:31:
In file included from /usr/local/include/simde/x86/sse2.h:35:
In file included from /usr/local/include/simde/x86/sse.h:34:
/usr/local/include/simde/x86/../simde-f16.h:96:11: error: _Float16 is not 
supported on this target
  typedef _Float16 simde_float16;
          ^
1 error generated.
error: command '/usr/bin/cc' failed with exit code 1

ERROR Backend subprocess exited when trying to invoke build_wheel
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/py-macs3


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