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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy20/data/143amd64-quarterly/24fedaeb4e97/logs/ncbi-cxx-toolkit-29.0.1.log Build URL: https://pkg-status.freebsd.org/beefy20/build.html?mastername=143amd64-quarterly&build=24fedaeb4e97 Log: =>> Building biology/ncbi-cxx-toolkit build started at Thu Oct 9 01:07:44 -00 2025 port directory: /usr/ports/biology/ncbi-cxx-toolkit package name: ncbi-cxx-toolkit-29.0.1 building for: FreeBSD 143amd64-quarterly-job-07 14.3-RELEASE-p4 FreeBSD 14.3-RELEASE-p4 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 1979 Oct 2 01:01 /usr/ports/biology/ncbi-cxx-toolkit/Makefile Ports top last git commit: 24fedaeb4 Ports top unclean checkout: no Port dir last git commit: e3fa556c9 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.3-12-g245259ce Host OSVERSION: 1600000 Jail OSVERSION: 1403000 Job Id: 07 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p4 UNAME_r=14.3-RELEASE-p4 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.3-12-g245259ce MASTERMNT=/usr/local/poudriere/data/.m/143amd64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/143amd64-quarterly/07/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=143amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/143amd64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.3-12-g245259ce SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --without-debug --with-dll --without-static --without-vdb --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=/usr/local/bin/gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 OPENSSLBASE=/usr OPENSSLDIR=/etc/ssl OPENSSLINC=/usr/include OPENSSLLIB=/usr/lib XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work XDG_CACHE_HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.cache HOME=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " BSD_INSTALL_PROGRAM="in stall -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.42.0 PERL_VER=5.42 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.42 DOCSDIR="share/doc/ncbi-cxx-toolkit" EXAMPLESDIR="share/examples/ncbi-cxx-toolkit" DATADIR="share/ncbi-cxx-toolkit" WWWDIR="www/ncbi-cxx-toolkit" ETCDIR="etc/ncbi-cxx-toolkit" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-cxx-toolkit DOCSDIR=/usr/local/share/doc/ncbi-cxx-toolkit EXAMPLESDIR=/usr/local/share/examples/ncbi-cxx-toolkit WWWDIR=/usr/local/www/ncbi-cxx-toolkit ETCDIR=/usr/local/etc/ncbi-cxx-toolkit --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-cxx-toolkit-29.0.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.3.1.pkg [143amd64-quarterly-job-07] Installing pkg-2.3.1... [143amd64-quarterly-job-07] Extracting pkg-2.3.1: .......... done ===> ncbi-cxx-toolkit-29.0.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-cxx-toolkit-29.0.1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-29.0.1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-29.0.1 for building => SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-cxx-toolkit-29.0.1 for building ===> Extracting for ncbi-cxx-toolkit-29.0.1 => SHA256 Checksum OK for ncbi-ncbi-cxx-toolkit-public-release-29.0.1_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for ncbi-cxx-toolkit-29.0.1 ===> Applying FreeBSD patches for ncbi-cxx-toolkit-29.0.1 from /usr/ports/biology/ncbi-cxx-toolkit/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> ncbi-cxx-toolkit-29.0.1 depends on package: gmake>=4.4.1 - not found ===> Installing existing package /packages/All/gmake-4.4.1.pkg [143amd64-quarterly-job-07] Installing gmake-4.4.1... [143amd64-quarterly-job-07] `-- Installing gettext-runtime-0.23.1... [143amd64-quarterly-job-07] | `-- Installing indexinfo-0.3.1_1... [143amd64-quarterly-job-07] | `-- Extracting indexinfo-0.3.1_1: .... done [143amd64-quarterly-job-07] `-- Extracting gettext-runtime-0.23.1: .......... done [143amd64-quarterly-job-07] Extracting gmake-4.4.1: .......... done ===> ncbi-cxx-toolkit-29.0.1 depends on package: gmake>=4.4.1 - found ===> Returning to build of ncbi-cxx-toolkit-29.0.1 ===> ncbi-cxx-toolkit-29.0.1 depends on file: /usr/local/bin/python3.11 - not found ===> Installing existing package /packages/All/python311-3.11.13_1.pkg [143amd64-quarterly-job-07] Installing python311-3.11.13_1... [143amd64-quarterly-job-07] `-- Installing libffi-3.5.1... [143amd64-quarterly-job-07] `-- Extracting libffi-3.5.1: .......... done [143amd64-quarterly-job-07] `-- Installing mpdecimal-4.0.1... [143amd64-quarterly-job-07] `-- Extracting mpdecimal-4.0.1: .......... done [143amd64-quarterly-job-07] `-- Installing readline-8.2.13_2... [143amd64-quarterly-job-07] `-- Extracting readline-8.2.13_2: .......... done [143amd64-quarterly-job-07] Extracting python311-3.11.13_1: .......... done ===== Message from python311-3.11.13_1: -- <snip> config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/algo/phy_tree/unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/algo/phy_tree/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/algo/phy_tree/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/algo/text/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/biosample_util/unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/biosample_util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/grid_cgi/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/hgvs/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/hgvs/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/pmcidconv_client/unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/pmcidconv_client/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/xmlreaders/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/cgi_redirect/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/discrepancy/unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/discrepancy/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/jsonwrapp/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/jsonwrapp/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/eutils_client/unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/eutils_client/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/eutils_client/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/data_loaders_util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/netstorage/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/netstorage/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/clog/app/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/clog/demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/clog/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/clog/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/third_party/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/lapackwrapp/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/xmlwrapp/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/hydra_client/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/misc/third_party_static/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/objmgr/split/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/objmgr/util/unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/objmgr/util/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/objmgr/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/objmgr/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/cgi/demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/cgi/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/cgi/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/ctools/asn/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/ctools/ctransition/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/ctools/ctransition/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/ctools/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/ctools/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/dumper/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/test_split/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/test_vmerge/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/cache_verify/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/bdb/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/db/sqlite/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/connect/ext/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/connect/ext/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/connect/services/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/connect/services/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/connect/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/connect/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/app/bam2graph/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/app/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/bam/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/bam/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/csra/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/csra/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/snp/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/snp/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/vdbgraph/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/vdbgraph/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/wgs/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/wgs/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/sra/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/data_loaders/sra/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/readers/bam/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/readers/bam/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/readers/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/readers/sra/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/readers/sra/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/sra/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/serial/grpc_integration/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/serial/datatool/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/serial/soap/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/serial/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/serial/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/serial/test/test_io/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/ncbicfg.c config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/Makefile.precompile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/jaeger/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/jaeger/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/opentelemetry/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/opentelemetry/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/./Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/inc/common/ncbi_build_ver.h config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/include/common/ncbi_revision.h config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/inc/ncbiconf_unix.h config.status: executing default commands /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib/ncbicfg.c is updated /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/inc/common/ncbi_build_ver.h is updated Build session ID: ce034212-a4ae-11f0-b99a-a036bc746cc1 /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/helpers TMPL=run_with_lock -k flag-stamps gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/build-system/helpers' gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/build-system/helpers' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.app.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/helpers TMPL=run_with_lock -k all gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/build-system/helpers' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/helpers/run_with_lock.c. cc -c -g -O2 -DNCBI_APP_BUILT_AS=run_with_lock -DNCBI_BUILD_SESSION_ID=ce034212-a4ae-11f0-b99a-a036bc746cc1 /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/helpers/run_with_lock.c -o run_with_lock.o cc -Wl,-rpath,/usr/local/lib run_with_lock.o -L/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/lib -lm -pthread -o run_with_lock /bin/sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/bin /bin/ln -f run_with_lock /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/bin/run_with_lock gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/build-system/helpers' Prebuilt project_tree_builder not found =============================================================================== NCBI C++ Toolkit documentation: Online: https://www.ncbi.nlm.nih.gov/toolkit/doc/book/ Local: ./doc/public/index.html For the available configuration flags run: ./configure --help CFLAGS = -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC CXXFLAGS = -Wall -Wno-format-y2k -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -Wno-deprecated-register -fPIC CPPFLAGS = -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE LDFLAGS = -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -O LIBRARIES: build as dynamic by default FEATURES: LLVMClang Clang MT LFS DLL DLL_BUILD unix WinMain BSD PubSeqOS PACKAGES: enabled: Iconv Z BZ2 PCRE MBEDTLS OPENSSL KRB5 CURL FreeTDS MySQL PYTHON PERL ICU XPM MAGIC LMDB LocalLMDB disabled: UUID FUSE LIBUNWIND LIBDW BACKWARD_CPP LocalZ LocalBZ2 LZO ZSTD PCRE2 LocalPCRE GMP GCRYPT NETTLE GNUTLS Sybase DBLib BerkeleyDB BerkeleyDB++ ODBC PYTHON25 PYTHON26 PYTHON27 PYTHON3 Boost.Chrono Boost.Filesystem Boost.Iostreams Boost.Program-Options Boost.Regex Boost.Serialization Boost.Spirit Boost.System Boost.Test Boost.Test.Included Boost.Thread C-Toolkit NCBICRYPT OpenGL MESA GLUT GLEW wxWidgets wx2.8 Fast-CGI FASTCGIPP LocalSSS LocalMSGMAIL2 SSSUTILS LocalNCBILS NCBILS2 SSSDB SP ORBacus EXPAT SABLOT LIBXML LIBXSLT LIBEXSLT Xerces Xalan Zorba SQLITE3 SQLITE3ASYNC VDB NGS OECHEM SGE DRMAA2 MUPARSER HDF5 JPEG PNG TIFF GIF UNGIF GL2PS FreeType FTGL MIMETIC GSOAP AVRO Cereal SASL2 MONGODB MONGODB3 LEVELDB LIBURING ROCKSDB GMOCK LAPACK LIBUV LIBSSH LIBSSH2 CASSANDRA NGHTTP2 H2O INFLUXDB LIBXLSXWRITER PROTOBUF GRPC MSGSL AWS_SDK CRC32C GOOGLE_CLOUD HIREDIS APACHE_ARROW LIBRDKAFKA CPPKAFKA THRIFT NLohmann_JSON YAML_CPP OPENTRACING JAEGER OPENTELEMETRY PROJECTS: enabled: cgi serial objects dbapi app ctools algo disabled: bdb gui gbench Tools / flags / paths: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.mk Configuration header: /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/inc/ncbiconf_unix.h To build everything: cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build && /usr/local/bin/gmake all_r or simply run /usr/local/bin/gmake in the current directory ******* CONFIGURATION SUCCESSFUL ******* =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for ncbi-cxx-toolkit-29.0.1 if test -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.flat; then \ cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build && /usr/local/bin/gmake -f Makefile.flat; \ elif test -s ""; then \ cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build && /usr/local/bin/gmake all_p; \ else \ cd /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build && /usr/local/bin/gmake all_r; \ fi gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build' Build session ID: 21bdf56d-a4af-11f0-b99a-a036bc746cc1 /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/gui/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/gui/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/gui/Makefile.in /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64 gui/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/gui/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/internal/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/internal/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/internal/Makefile.in /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64 internal/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/internal/Makefile /usr/local/bin/gmake -C corelib all_r || exit 5 gmake[2]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' /usr/local/bin/gmake[4] (Makefile.precompile): Nothing to be done for `all'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/corelib TMPL=corelib export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/corelib TMPL=test_mt export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/corelib TMPL=corelib flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/corelib TMPL=test_mt flag-stamps gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: *** No rule to make target '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/status/Boost.Test.Included.enabled', needed by 'requirements'. Stop. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' NOTE: skipping project "test_boost" due to unmet requirements gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/corelib' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/Clang1917-ReleaseMTDLL64/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-cxx-toolkit/work/ncbi-cxx-toolkit-public-release-29.0.1/src/corelib TMPL=corelib all =>> Killing runaway build after 7200 seconds with no output
