You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     po...@freebsd.org
Last committer: amd...@freebsd.org
Ident:          $FreeBSD: head/biology/libsbml/Makefile 399316 2015-10-14 
23:51:20Z amdmi3 $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p400328_s290048/logs/libsbml-5.11.4_1.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p400328_s290048
Log:

====>> Building biology/libsbml
build started at Fri Oct 30 21:30:34 UTC 2015
port directory: /usr/ports/biology/libsbml
building for: FreeBSD head-armv6-default-job-23 11.0-CURRENT FreeBSD 
11.0-CURRENT r290048 arm
maintained by: po...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/libsbml/Makefile 399316 2015-10-14 
23:51:20Z amdmi3 $
Poudriere version: 3.1.9
Host OSVERSION: 1100079
Jail OSVERSION: 1100083




!!! Jail is newer than host. (Jail: 1100083, Host: 1100079) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100083
UNAME_v=FreeBSD 11.0-CURRENT r290048
UNAME_r=11.0-CURRENT
LC_COLLATE=C
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=libsbml-5.11.4_1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for libsbml-5.11.4_1:
     EXAMPLES=on: Build and/or install examples
     PYTHON=off: Python bindings or support
     RUBY=off: Ruby bindings or support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work  
HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/libsbml/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/libsbml/work  
HOME=/wrkdirs/usr/ports/biology/libsbml/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe 
-mfloat-abi=softfp  -I/usr/include -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" -L/usr/lib" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp 
-I/usr/include -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
EXAMPLES=""
NO_EXAMPLES="@comment
"
PYTHON="@comment
"
NO_PYTHON=""
RUBY="@comment
"
NO_RUBY=""
CMAKE_BUILD_TYPE="release"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/doc/libsbml"
EXAMPLESDIR="share/examples/libsbml"
DATADIR="share/libsbml"
WWWDIR="www/libsbml"
ETCDIR="etc/libsbml"
--End PLIST_SUB--

--SUB_LIST--
EXAMPLES=""
NO_EXAMPLES="@comment
"
PYTHON="@comment
"
NO_PYTHON=""
RUBY="@comment
"
NO_RUBY=""
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/libsbml
DOCSDIR=/usr/local/share/doc/libsbml
EXAMPLESDIR=/usr/local/share/examples/libsbml
WWWDIR=/usr/local/www/libsbml
ETCDIR=/usr/local/etc/libsbml
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
<snip>
Message from pkg-1.6.1_1:
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   libsbml-5.11.4_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of libsbml-5.11.4_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by libsbml-5.11.4_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by libsbml-5.11.4_1 for building
=> SHA256 Checksum OK for libSBML-5.11.4-core-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License LGPL21 accepted by the user
===> Fetching all distfiles required by libsbml-5.11.4_1 for building
===>  Extracting for libsbml-5.11.4_1
=> SHA256 Checksum OK for libSBML-5.11.4-core-src.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for libsbml-5.11.4_1
===========================================================================
=======================<phase: build-depends  >============================
===>   libsbml-5.11.4_1 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.3.1.txz
[head-armv6-default-job-23] Installing cmake-3.3.1...
[head-armv6-default-job-23] `-- Installing expat-2.1.0_3...
[head-armv6-default-job-23] `-- Extracting expat-2.1.0_3: .......... done
[head-armv6-default-job-23] `-- Installing cmake-modules-3.3.1...
[head-armv6-default-job-23] `-- Extracting cmake-modules-3.3.1: .......... done
[head-armv6-default-job-23] `-- Installing curl-7.45.0...
[head-armv6-default-job-23] |   `-- Installing ca_root_nss-3.20...
[head-armv6-default-job-23] |   `-- Extracting ca_root_nss-3.20: ....... done
[head-armv6-default-job-23] `-- Extracting curl-7.45.0: .......... done
[head-armv6-default-job-23] `-- Installing libarchive-3.1.2_4,1...
[head-armv6-default-job-23] |   `-- Installing lzo2-2.09...
[head-armv6-default-job-23] |   `-- Extracting lzo2-2.09: .......... done
[head-armv6-default-job-23] `-- Extracting libarchive-3.1.2_4,1: .......... done
[head-armv6-default-job-23] `-- Installing jsoncpp-0.6.0.r2_2...
[head-armv6-default-job-23] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done
[head-armv6-default-job-23] Extracting cmake-3.3.1: .......... done
Message from ca_root_nss-3.20:
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   libsbml-5.11.4_1 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of libsbml-5.11.4_1
===========================================================================
=======================<phase: lib-depends    >============================
===>   libsbml-5.11.4_1 depends on shared library: libxml2.so - not found
===>   Installing existing package /packages/All/libxml2-2.9.2_3.txz
[head-armv6-default-job-23] Installing libxml2-2.9.2_3...
[head-armv6-default-job-23] Extracting libxml2-2.9.2_3: .......... done
===>   libsbml-5.11.4_1 depends on shared library: libxml2.so - found 
(/usr/local/lib/libxml2.so)
===>   Returning to build of libsbml-5.11.4_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for libsbml-5.11.4_1
===>   FreeBSD 10 autotools fix applied to 
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.11.4/config/libtool.m4
===>   FreeBSD 10 autotools fix applied to 
/wrkdirs/usr/ports/biology/libsbml/work/libsbml-5.11.4/configure
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/libsbml/work/.build
-- The C compiler identification is Clang 3.6.1
-- The CXX compiler identification is Clang 3.6.1
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++
-- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compile features
CMake Error: Generator: execution of make failed. Make command was: 
"/usr/bin/make" "cmTC_e12d7/fast"
-- Detecting C compile features - failed
-- Could NOT find SWIG (missing:  SWIG_EXECUTABLE SWIG_DIR) 
-- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so
-- Looking for BZ2_bzCompressInit in /usr/lib/libbz2.so - found
-- Looking for gzopen in /usr/lib/libz.so
-- Looking for gzopen in /usr/lib/libz.so - found
-- Looking for include file check.h
-- Looking for include file check.h - not found
-- Looking for include file expat.h
-- Looking for include file expat.h - not found
-- Looking for include file errno.h
-- Looking for include file errno.h - found
-- Looking for include file ieeefp.h
-- Looking for include file ieeefp.h - found
-- Looking for include file math.h
-- Looking for include file math.h - found
-- Looking for include file sys/types.h
-- Looking for include file sys/types.h - found
-- Looking for include file float.h
CMake Error: Generator: execution of make failed. Make command was: 
"/usr/bin/make" "cmTC_f1354/fast"
-- Looking for include file float.h - not found
-- Check if the system is big endian
-- Searching 16 bit integer
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- 
----------------------------------------------------------------------
libSBML version 5.11.4
----------------------------------------------------------------------

   More information and the latest version are available online at
   http://sbml.org/Software/libSBML

   Please report problems using the issue tracker at
   http://sbml.org/Software/libsbml/issue-tracker

   To contact the developers directly, email libsbml-t...@caltech.edu

   Configured on host 'head-armv6-default-job-23'
     host type                       = FreeBSD
     host operating system           = FreeBSD 11.0-CURRENT
     host CPU architecture           = armv6

   General build flags:
     CC                              = /nxb-bin/usr/bin/cc
     CXX                             = /nxb-bin/usr/bin/c++
     CPPFLAGS                        =  -DLINUX
     CFLAGS                          = -O2 -pipe -mfloat-abi=softfp  
-I/usr/include -fno-strict-aliasing -fno-strict-aliasing -fPIC
     CXXFLAGS                        = -O2 -pipe -mfloat-abi=softfp 
-I/usr/include -fno-strict-aliasing -fno-strict-aliasing -fPIC
     LDFLAGS                         =  -L/usr/lib

   XML parser library configuration:
     XML library                     = libxml2
     CPPFLAGS for XML                = -I/usr/local/include/libxml2
     LIBS for XML                    = /usr/local/lib/libxml2.so

   Other libSBML configuration settings:
     Installation $prefix            = /usr/local
--      Value of $LD_LIBRARY_PATH       = 
--      Using SWIG                      = SWIG_EXECUTABLE-NOTFOUND (Version )
--      Using C++ namespace ('libsbml') = no
-- 
--      Build examples                  = no
-- 
--      Use Legacy Math                 = no
-- 
--    Support for SBML Level 3 Packages: 
--      SBML 'layout' package  = OFF
-- 

-- Other potentially important settings:
--   Compression support is enabled for .zip and .gz files
--   Compression support is enabled for .bz2 files
-- 
----------------------------------------------------------------------
-- Configuring incomplete, errors occurred!
See also 
"/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeOutput.log".
See also 
"/wrkdirs/usr/ports/biology/libsbml/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/libsbml
_______________________________________________
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