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build.

Maintainer:     p...@freebsd.org
Last committer: p...@freebsd.org
Ident:          $FreeBSD: head/biology/seqtools/Makefile 401527 2015-11-13 
18:46:02Z pi $
Log URL:        
http://beefy2.nyi.freebsd.org/data/93amd64-default/401798/logs/seqtools-4.39.1.log
Build URL:      
http://beefy2.nyi.freebsd.org/build.html?mastername=93amd64-default&build=401798
Log:

====>> Building biology/seqtools
build started at Wed Nov 18 08:40:42 UTC 2015
port directory: /usr/ports/biology/seqtools
building for: FreeBSD 93amd64-default-job-24 9.3-RELEASE-p30 FreeBSD 
9.3-RELEASE-p30 amd64
maintained by: p...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/seqtools/Makefile 401527 2015-11-13 
18:46:02Z pi $
Poudriere version: 3.1.9
Host OSVERSION: 1100085
Jail OSVERSION: 903000

---Begin Environment---
SHELL=/bin/csh
OSVERSION=903000
UNAME_v=FreeBSD 9.3-RELEASE-p30
UNAME_r=9.3-RELEASE-p30
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/93amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqtools-4.39.1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/93amd64-default/ref/.p/pool
MASTERNAME=93amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for seqtools-4.39.1:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqtools/work  
HOME=/wrkdirs/usr/ports/biology/seqtools/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR="/usr/lib"  CC="gcc" CFLAGS="-O2 -pipe -I/usr/local/include 
-fstack-protector -fno-strict-aliasing"  CPP="gcpp" CPPFLAGS=""  LDFLAGS=" 
-L/usr/local/lib -lexecinfo -lcurl -lsqlite3 -lm -fstack-protector" LIBS=""  
CXX="g++" CXXFLAGS="-O2 -pipe -I/usr/local/include -fstack-protector 
-fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=9.3
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
DOCSDIR="share/doc/seqtools"
EXAMPLESDIR="share/examples/seqtools"
DATADIR="share/seqtools"
WWWDIR="www/seqtools"
ETCDIR="etc/seqtools"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqtools
DOCSDIR=/usr/local/share/doc/seqtools
EXAMPLESDIR=/usr/local/share/examples/seqtools
WWWDIR=/usr/local/www/seqtools
ETCDIR=/usr/local/etc/seqtools
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   seqtools-4.39.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.6.1_2.txz
[93amd64-default-job-24] Installing pkg-1.6.1_2...
[93amd64-default-job-24] Extracting pkg-1.6.1_2: .......... done
Message from pkg-1.6.1_2:
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   seqtools-4.39.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of seqtools-4.39.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv3 accepted by the user
=> seqtools-4.39.1.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch 
ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/seqtools-4.39.1.tar.gz
fetch: 
ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/seqtools-4.39.1.tar.gz:
 size mismatch: expected 5602578, actual 5602576
=> Attempting to fetch 
http://distcache.FreeBSD.org/ports-distfiles/seqtools-4.39.1.tar.gz
fetch: http://distcache.FreeBSD.org/ports-distfiles/seqtools-4.39.1.tar.gz: Not 
Found
=> Couldn't fetch it - please try to retrieve this
=> port manually into /portdistfiles/ and try again.
*** [do-fetch] Error code 1

Stop in /usr/ports/biology/seqtools.
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