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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy14/data/135amd64-quarterly/9514ac999043/logs/libRmath-4.5.2.log Build URL: https://pkg-status.freebsd.org/beefy14/build.html?mastername=135amd64-quarterly&build=9514ac999043 Log: =>> Building math/libRmath build started at Fri Jan 16 18:54:17 UTC 2026 port directory: /usr/ports/math/libRmath package name: libRmath-4.5.2 building for: FreeBSD 135amd64-quarterly-job-09 13.5-RELEASE-p8 FreeBSD 13.5-RELEASE-p8 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 1315 Jan 15 01:01 /usr/ports/math/libRmath/Makefile Ports top last git commit: 9514ac9990434680c9394df1a07b7b7469198293 Ports top unclean checkout: no Port dir last git commit: 9514ac9990434680c9394df1a07b7b7469198293 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.4-15-g61aba751 Host OSVERSION: 1600007 Jail OSVERSION: 1305000 Job Id: 09 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1305000 UNAME_v=FreeBSD 13.5-RELEASE-p8 UNAME_r=13.5-RELEASE-p8 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.4-15-g61aba751 MASTERMNT=/usr/local/poudriere/data/.m/135amd64-quarterly/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/135amd64-quarterly/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=135amd64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/135amd64-quarterly/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.4-15-g61aba751 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --disable-nls --with-cairo=no --with-ICU=no --with-jpeglib=no --with-libpng=no --with-libtiff=no --with-readline=no --with-tcltk=no --with-x=no --without-libintl-prefix --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ac_cv_header_iconv_h=no FPICFLAGS=-fPIC F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/libRmath/work/.cache HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/libRmath/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/libRmath/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/l ocal/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CMAKE_PREFIX_PATH="/usr/local" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran14" F90="gfortran14" FC="gfortran14" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" F90FLAGS="-O -Wl,-rpath=/usr/local/lib/gcc14" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc14" XDG_DATA_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/libRmath/work XDG_CACHE_HOME=/wrkdirs/usr/ports/math/libRmath/work/.cache HOME=/wrkdirs/usr/ports/math/libRmath/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/libRmath/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/math/libRmath/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/ob jdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc14 -L/usr/local/lib/gcc14 " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- RMATH_SOVERSION="4.5" OSREL=13.5 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/libRmath" EXAMPLESDIR="share/examples/libRmath" DATADIR="share/libRmath" WWWDIR="www/libRmath" ETCDIR="etc/libRmath" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libRmath DOCSDIR=/usr/local/share/doc/libRmath EXAMPLESDIR=/usr/local/share/examples/libRmath WWWDIR=/usr/local/www/libRmath ETCDIR=/usr/local/etc/libRmath --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libRmath-4.5.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.5.1.pkg [135amd64-quarterly-job-09] Installing pkg-2.5.1... [135amd64-quarterly-job-09] Extracting pkg-2.5.1: .......... done ===> libRmath-4.5.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of libRmath-4.5.2 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-4.5.2 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-4.5.2 for building => SHA256 Checksum OK for R-4.5.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by libRmath-4.5.2 for building ===> Extracting for libRmath-4.5.2 => SHA256 Checksum OK for R-4.5.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for libRmath-4.5.2 =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> libRmath-4.5.2 depends on executable: gfortran14 - not found ===> Installing existing package /packages/All/gcc14-14.2.0_4.pkg [135amd64-quarterly-job-09] Installing gcc14-14.2.0_4... [135amd64-quarterly-job-09] `-- Installing binutils-2.44,1... [135amd64-quarterly-job-09] | `-- Installing indexinfo-0.3.1_1... [135amd64-quarterly-job-09] | `-- Extracting indexinfo-0.3.1_1: .... done [135amd64-quarterly-job-09] | `-- Installing zstd-1.5.7_1... [135amd64-quarterly-job-09] | `-- Extracting zstd-1.5.7_1: .......... done [135amd64-quarterly-job-09] `-- Extracting binutils-2.44,1: .......... done [135amd64-quarterly-job-09] `-- Installing gmp-6.3.0... [135amd64-quarterly-job-09] `-- Extracting gmp-6.3.0: .......... done [135amd64-quarterly-job-09] `-- Installing mpc-1.3.1_1... [135amd64-quarterly-job-09] | `-- Installing mpfr-4.2.2,1... [135amd64-quarterly-job-09] | `-- Extracting mpfr-4.2.2,1: .......... done [135amd64-quarterly-job-09] `-- Extracting mpc-1.3.1_1: ......... done [135amd64-quarterly-job-09] Extracting gcc14-14.2.0_4: .......... done ===== Message from gcc14-14.2.0_4: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc14 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. <snip> checking if zstd version >= 1.3.3... yes checking for ZSTD_decompressBound... yes checking for libdeflate.h... no ./configure: : Permission denied checking for pcre2-config... /usr/local/bin/pcre2-config checking for pcre2.h... yes checking for pcre2_compile_8 in -lpcre2-8... yes checking if PCRE2 has Unicode support... yes checking whether PCRE support suffices... yes checking for curl-config... /usr/local/bin/curl-config checking libcurl version ... 8.17.0 checking for curl/curl.h... yes checking if libcurl is >= 7.28.0... yes checking if libcurl supports https... yes checking whether leap seconds are treated according to POSIX... yes checking for inline... inline checking for struct stat.st_atim.tv_nsec... yes checking whether struct stat.st_atim is of type struct timespec... yes checking for setitimer... yes checking for cc -std=gnu23 option to enable large file support... none needed checking for declarations of fseeko and ftello... yes checking whether KERN_USRSTACK sysctl is supported... yes checking for lpr... lpr checking for paperconf... false checking for Fortran flag to compile .f90 files... none checking for Fortran flag to compile .f95 files... none checking for gfortran14 option to support OpenMP... (cached) -fopenmp checking for recommended packages... yes checking whether NLS is requested... no checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: --with-libdeflate-compression requires libdeflate R is now configured for amd64-portbld-freebsd13.5 Source directory: . Installation directory: /usr/local C compiler: cc -std=gnu23 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing Fortran fixed-form compiler: gfortran14 -O -Wl,-rpath=/usr/local/lib/gcc14 Default C++ compiler: c++ -std=gnu++17 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include Fortran free-form compiler: gfortran14 -Wl,-rpath=/usr/local/lib/gcc14 Obj-C compiler: cc -g -O2 -fobjc-exceptions Interfaces supported: External libraries: pcre2, curl Additional capabilities: Options enabled: shared BLAS, R profiling Capabilities skipped: PNG, JPEG, TIFF, NLS, cairo, ICU Options not enabled: memory profiling Recommended packages: yes configure: WARNING: you cannot build info or HTML versions of the R manuals configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: I could not determine a browser configure: WARNING: I could not determine a PDF viewer =========================================================================== =======================<phase: build >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Building for libRmath-4.5.2 --- ../../include/Rconfig.h --- --- Copy --- --- inc --- --- ../../include/Rconfig.h --- (cd ../../include; /usr/bin/make Rconfig.h) --- Rconfig.h --- Copying source files --- inc --- (cd ../../include; /usr/bin/make Rmath.h) --- Makedeps --- --- mlutils.d --- --- d1mach.d --- making mlutils.d from mlutils.c --- mlutils.d --- In file included from mlutils.c:24: ./../nmath.h:44:10: fatal error: 'Rmath.h' file not found 44 | #include <Rmath.h> | ^~~~~~~~~ 1 error generated. *** [mlutils.d] Error code 1 make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.5.2/src/nmath/standalone making d1mach.d from d1mach.c --- inc --- --- Rmath.h --- *** [inc] Error code 6 make: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.5.2/src/nmath/standalone --- Makedeps --- 1 error make[1]: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.5.2/src/nmath/standalone *** [Makedeps] Error code 2 make: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.5.2/src/nmath/standalone 2 errors make: stopped in /wrkdirs/usr/ports/math/libRmath/work/R-4.5.2/src/nmath/standalone ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/math/libRmath
