You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     po...@freebsd.org
Last committer: m...@freebsd.org
Ident:          $FreeBSD: head/biology/clustalw/Makefile 386312 2015-05-14 
10:15:04Z mat $
Log URL:        
http://beefy7.nyi.freebsd.org/data/head-mips-default/p402431_s291353/logs/clustalw-2.1_1.log
Build URL:      
http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p402431_s291353
Log:

====>> Building biology/clustalw
build started at Thu Nov 26 05:30:01 UTC 2015
port directory: /usr/ports/biology/clustalw
building for: FreeBSD head-mips-default-job-22 11.0-CURRENT FreeBSD 
11.0-CURRENT r291353 mips
maintained by: po...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/clustalw/Makefile 386312 2015-05-14 
10:15:04Z mat $
Poudriere version: 3.1.10
Host OSVERSION: 1100085
Jail OSVERSION: 1100090




!!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100090
UNAME_v=FreeBSD 11.0-CURRENT r291353
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=clustalw-2.1_1
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.10
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/clustalw/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/clustalw/work  
HOME=/wrkdirs/usr/ports/biology/clustalw/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/clustalw/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/clustalw/work  
HOME=/wrkdirs/usr/ports/biology/clustalw/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  
-fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" 
LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/clustalw"
EXAMPLESDIR="share/examples/clustalw"
DATADIR="share/clustalw"
WWWDIR="www/clustalw"
ETCDIR="etc/clustalw"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/clustalw
DOCSDIR=/usr/local/share/doc/clustalw
EXAMPLESDIR=/usr/local/share/examples/clustalw
WWWDIR=/usr/local/www/clustalw
ETCDIR=/usr/local/etc/clustalw
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
<snip>
===> Fetching all distfiles required by clustalw-2.1_1 for building
===>  Extracting for clustalw-2.1_1
=> SHA256 Checksum OK for clustalw-2.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for clustalw-2.1_1
===>  Applying FreeBSD patches for clustalw-2.1_1
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for clustalw-2.1_1
configure: loading site script /usr/ports/Templates/config.site
checking build system type... mips-portbld-freebsd11.0
checking host system type... mips-portbld-freebsd11.0
checking target system type... mips-portbld-freebsd11.0
building for freebsd11.0
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make sets $(MAKE)... (cached) yes
checking for gcc... /nxb-bin/usr/bin/cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether /nxb-bin/usr/bin/c++ accepts -g... yes
checking dependency style of /nxb-bin/usr/bin/c++... gcc3
checking for ranlib... ranlib
checking how to run the C++ preprocessor... /nxb-bin/usr/bin/c++ -E
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stdbool.h that conforms to C99... (cached) yes
checking for _Bool... (cached) yes
checking for an ANSI C-conforming const... yes
checking for size_t... (cached) yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... (cached) yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating m4/Makefile
config.status: creating src/Makefile
config.status: creating src/clustalw_version.h
config.status: creating src/config.h
config.status: executing depfiles commands
===========================================================================
=======================<phase: build          >============================
===>  Building for clustalw-2.1_1
Making all in m4
Making all in src
/nxb-bin/usr/bin/make  all-recursive
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT FullPairwiseAlign.o -MD -MP -MF .deps/FullPairwiseAlign.Tpo -c -o 
FullPairwiseAlign.o `test -f './pairwise/FullPairwiseAlign.cpp' || echo 
'./'`./pairwise/FullPairwiseAlign.cpp
mv -f .deps/FullPairwiseAlign.Tpo .deps/FullPairwiseAlign.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT FastPairwiseAlign.o -MD -MP -MF .deps/FastPairwiseAlign.Tpo -c -o 
FastPairwiseAlign.o `test -f './pairwise/FastPairwiseAlign.cpp' || echo 
'./'`./pairwise/FastPairwiseAlign.cpp
mv -f .deps/FastPairwiseAlign.Tpo .deps/FastPairwiseAlign.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT MSFFileParser.o -MD -MP -MF .deps/MSFFileParser.Tpo -c -o MSFFileParser.o 
`test -f './fileInput/MSFFileParser.cpp' || echo 
'./'`./fileInput/MSFFileParser.cpp
mv -f .deps/MSFFileParser.Tpo .deps/MSFFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT FileReader.o -MD -MP -MF .deps/FileReader.Tpo -c -o FileReader.o `test -f 
'./fileInput/FileReader.cpp' || echo './'`./fileInput/FileReader.cpp
mv -f .deps/FileReader.Tpo .deps/FileReader.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT PIRFileParser.o -MD -MP -MF .deps/PIRFileParser.Tpo -c -o PIRFileParser.o 
`test -f './fileInput/PIRFileParser.cpp' || echo 
'./'`./fileInput/PIRFileParser.cpp
mv -f .deps/PIRFileParser.Tpo .deps/PIRFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT RSFFileParser.o -MD -MP -MF .deps/RSFFileParser.Tpo -c -o RSFFileParser.o 
`test -f './fileInput/RSFFileParser.cpp' || echo 
'./'`./fileInput/RSFFileParser.cpp
mv -f .deps/RSFFileParser.Tpo .deps/RSFFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT GDEFileParser.o -MD -MP -MF .deps/GDEFileParser.Tpo -c -o GDEFileParser.o 
`test -f './fileInput/GDEFileParser.cpp' || echo 
'./'`./fileInput/GDEFileParser.cpp
mv -f .deps/GDEFileParser.Tpo .deps/GDEFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT InFileStream.o -MD -MP -MF .deps/InFileStream.Tpo -c -o InFileStream.o 
`test -f './fileInput/InFileStream.cpp' || echo 
'./'`./fileInput/InFileStream.cpp
mv -f .deps/InFileStream.Tpo .deps/InFileStream.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ClustalFileParser.o -MD -MP -MF .deps/ClustalFileParser.Tpo -c -o 
ClustalFileParser.o `test -f './fileInput/ClustalFileParser.cpp' || echo 
'./'`./fileInput/ClustalFileParser.cpp
mv -f .deps/ClustalFileParser.Tpo .deps/ClustalFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT PearsonFileParser.o -MD -MP -MF .deps/PearsonFileParser.Tpo -c -o 
PearsonFileParser.o `test -f './fileInput/PearsonFileParser.cpp' || echo 
'./'`./fileInput/PearsonFileParser.cpp
mv -f .deps/PearsonFileParser.Tpo .deps/PearsonFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT FileParser.o -MD -MP -MF .deps/FileParser.Tpo -c -o FileParser.o `test -f 
'./fileInput/FileParser.cpp' || echo './'`./fileInput/FileParser.cpp
mv -f .deps/FileParser.Tpo .deps/FileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT EMBLFileParser.o -MD -MP -MF .deps/EMBLFileParser.Tpo -c -o 
EMBLFileParser.o `test -f './fileInput/EMBLFileParser.cpp' || echo 
'./'`./fileInput/EMBLFileParser.cpp
mv -f .deps/EMBLFileParser.Tpo .deps/EMBLFileParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT RootedClusterTree.o -MD -MP -MF .deps/RootedClusterTree.Tpo -c -o 
RootedClusterTree.o `test -f './tree/UPGMA/RootedClusterTree.cpp' || echo 
'./'`./tree/UPGMA/RootedClusterTree.cpp
mv -f .deps/RootedClusterTree.Tpo .deps/RootedClusterTree.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT UPGMAAlgorithm.o -MD -MP -MF .deps/UPGMAAlgorithm.Tpo -c -o 
UPGMAAlgorithm.o `test -f './tree/UPGMA/UPGMAAlgorithm.cpp' || echo 
'./'`./tree/UPGMA/UPGMAAlgorithm.cpp
mv -f .deps/UPGMAAlgorithm.Tpo .deps/UPGMAAlgorithm.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Node.o -MD -MP -MF .deps/Node.Tpo -c -o Node.o `test -f 
'./tree/UPGMA/Node.cpp' || echo './'`./tree/UPGMA/Node.cpp
mv -f .deps/Node.Tpo .deps/Node.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT RootedGuideTree.o -MD -MP -MF .deps/RootedGuideTree.Tpo -c -o 
RootedGuideTree.o `test -f './tree/UPGMA/RootedGuideTree.cpp' || echo 
'./'`./tree/UPGMA/RootedGuideTree.cpp
mv -f .deps/RootedGuideTree.Tpo .deps/RootedGuideTree.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT RootedTreeOutput.o -MD -MP -MF .deps/RootedTreeOutput.Tpo -c -o 
RootedTreeOutput.o `test -f './tree/UPGMA/RootedTreeOutput.cpp' || echo 
'./'`./tree/UPGMA/RootedTreeOutput.cpp
mv -f .deps/RootedTreeOutput.Tpo .deps/RootedTreeOutput.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Tree.o -MD -MP -MF .deps/Tree.Tpo -c -o Tree.o `test -f './tree/Tree.cpp' 
|| echo './'`./tree/Tree.cpp
mv -f .deps/Tree.Tpo .deps/Tree.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ClusterTree.o -MD -MP -MF .deps/ClusterTree.Tpo -c -o ClusterTree.o `test 
-f './tree/ClusterTree.cpp' || echo './'`./tree/ClusterTree.cpp
mv -f .deps/ClusterTree.Tpo .deps/ClusterTree.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT TreeInterface.o -MD -MP -MF .deps/TreeInterface.Tpo -c -o TreeInterface.o 
`test -f './tree/TreeInterface.cpp' || echo './'`./tree/TreeInterface.cpp
mv -f .deps/TreeInterface.Tpo .deps/TreeInterface.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT UnRootedClusterTree.o -MD -MP -MF .deps/UnRootedClusterTree.Tpo -c -o 
UnRootedClusterTree.o `test -f './tree/UnRootedClusterTree.cpp' || echo 
'./'`./tree/UnRootedClusterTree.cpp
mv -f .deps/UnRootedClusterTree.Tpo .deps/UnRootedClusterTree.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ClusterTreeOutput.o -MD -MP -MF .deps/ClusterTreeOutput.Tpo -c -o 
ClusterTreeOutput.o `test -f './tree/ClusterTreeOutput.cpp' || echo 
'./'`./tree/ClusterTreeOutput.cpp
mv -f .deps/ClusterTreeOutput.Tpo .deps/ClusterTreeOutput.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT RandomGenerator.o -MD -MP -MF .deps/RandomGenerator.Tpo -c -o 
RandomGenerator.o `test -f './tree/RandomGenerator.cpp' || echo 
'./'`./tree/RandomGenerator.cpp
mv -f .deps/RandomGenerator.Tpo .deps/RandomGenerator.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT NJTree.o -MD -MP -MF .deps/NJTree.Tpo -c -o NJTree.o `test -f 
'./tree/NJTree.cpp' || echo './'`./tree/NJTree.cpp
mv -f .deps/NJTree.Tpo .deps/NJTree.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT AlignmentSteps.o -MD -MP -MF .deps/AlignmentSteps.Tpo -c -o 
AlignmentSteps.o `test -f './tree/AlignmentSteps.cpp' || echo 
'./'`./tree/AlignmentSteps.cpp
mv -f .deps/AlignmentSteps.Tpo .deps/AlignmentSteps.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT InteractiveMenu.o -MD -MP -MF .deps/InteractiveMenu.Tpo -c -o 
InteractiveMenu.o `test -f './interface/InteractiveMenu.cpp' || echo 
'./'`./interface/InteractiveMenu.cpp
mv -f .deps/InteractiveMenu.Tpo .deps/InteractiveMenu.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT CommandLineParser.o -MD -MP -MF .deps/CommandLineParser.Tpo -c -o 
CommandLineParser.o `test -f './interface/CommandLineParser.cpp' || echo 
'./'`./interface/CommandLineParser.cpp
mv -f .deps/CommandLineParser.Tpo .deps/CommandLineParser.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT SubMatrix.o -MD -MP -MF .deps/SubMatrix.Tpo -c -o SubMatrix.o `test -f 
'./substitutionMatrix/SubMatrix.cpp' || echo 
'./'`./substitutionMatrix/SubMatrix.cpp
mv -f .deps/SubMatrix.Tpo .deps/SubMatrix.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Iteration.o -MD -MP -MF .deps/Iteration.Tpo -c -o Iteration.o `test -f 
'./multipleAlign/Iteration.cpp' || echo './'`./multipleAlign/Iteration.cpp
mv -f .deps/Iteration.Tpo .deps/Iteration.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT MSA.o -MD -MP -MF .deps/MSA.Tpo -c -o MSA.o `test -f 
'./multipleAlign/MSA.cpp' || echo './'`./multipleAlign/MSA.cpp
mv -f .deps/MSA.Tpo .deps/MSA.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT MyersMillerProfileAlign.o -MD -MP -MF .deps/MyersMillerProfileAlign.Tpo -c 
-o MyersMillerProfileAlign.o `test -f 
'./multipleAlign/MyersMillerProfileAlign.cpp' || echo 
'./'`./multipleAlign/MyersMillerProfileAlign.cpp
mv -f .deps/MyersMillerProfileAlign.Tpo .deps/MyersMillerProfileAlign.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ProfileStandard.o -MD -MP -MF .deps/ProfileStandard.Tpo -c -o 
ProfileStandard.o `test -f './multipleAlign/ProfileStandard.cpp' || echo 
'./'`./multipleAlign/ProfileStandard.cpp
mv -f .deps/ProfileStandard.Tpo .deps/ProfileStandard.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ProfileWithSub.o -MD -MP -MF .deps/ProfileWithSub.Tpo -c -o 
ProfileWithSub.o `test -f './multipleAlign/ProfileWithSub.cpp' || echo 
'./'`./multipleAlign/ProfileWithSub.cpp
mv -f .deps/ProfileWithSub.Tpo .deps/ProfileWithSub.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ProfileBase.o -MD -MP -MF .deps/ProfileBase.Tpo -c -o ProfileBase.o `test 
-f './multipleAlign/ProfileBase.cpp' || echo 
'./'`./multipleAlign/ProfileBase.cpp
mv -f .deps/ProfileBase.Tpo .deps/ProfileBase.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT LowScoreSegProfile.o -MD -MP -MF .deps/LowScoreSegProfile.Tpo -c -o 
LowScoreSegProfile.o `test -f './multipleAlign/LowScoreSegProfile.cpp' || echo 
'./'`./multipleAlign/LowScoreSegProfile.cpp
mv -f .deps/LowScoreSegProfile.Tpo .deps/LowScoreSegProfile.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT OutputFile.o -MD -MP -MF .deps/OutputFile.Tpo -c -o OutputFile.o `test -f 
'./general/OutputFile.cpp' || echo './'`./general/OutputFile.cpp
mv -f .deps/OutputFile.Tpo .deps/OutputFile.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT UserParameters.o -MD -MP -MF .deps/UserParameters.Tpo -c -o 
UserParameters.o `test -f './general/UserParameters.cpp' || echo 
'./'`./general/UserParameters.cpp
mv -f .deps/UserParameters.Tpo .deps/UserParameters.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Utility.o -MD -MP -MF .deps/Utility.Tpo -c -o Utility.o `test -f 
'./general/Utility.cpp' || echo './'`./general/Utility.cpp
mv -f .deps/Utility.Tpo .deps/Utility.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT InvalidCombination.o -MD -MP -MF .deps/InvalidCombination.Tpo -c -o 
InvalidCombination.o `test -f './general/InvalidCombination.cpp' || echo 
'./'`./general/InvalidCombination.cpp
mv -f .deps/InvalidCombination.Tpo .deps/InvalidCombination.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT DebugLog.o -MD -MP -MF .deps/DebugLog.Tpo -c -o DebugLog.o `test -f 
'./general/DebugLog.cpp' || echo './'`./general/DebugLog.cpp
mv -f .deps/DebugLog.Tpo .deps/DebugLog.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ClustalWResources.o -MD -MP -MF .deps/ClustalWResources.Tpo -c -o 
ClustalWResources.o `test -f './general/ClustalWResources.cpp' || echo 
'./'`./general/ClustalWResources.cpp
mv -f .deps/ClustalWResources.Tpo .deps/ClustalWResources.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT VectorOutOfRange.o -MD -MP -MF .deps/VectorOutOfRange.Tpo -c -o 
VectorOutOfRange.o `test -f './general/VectorOutOfRange.cpp' || echo 
'./'`./general/VectorOutOfRange.cpp
mv -f .deps/VectorOutOfRange.Tpo .deps/VectorOutOfRange.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT SymMatrix.o -MD -MP -MF .deps/SymMatrix.Tpo -c -o SymMatrix.o `test -f 
'./general/SymMatrix.cpp' || echo './'`./general/SymMatrix.cpp
mv -f .deps/SymMatrix.Tpo .deps/SymMatrix.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Stats.o -MD -MP -MF .deps/Stats.Tpo -c -o Stats.o `test -f 
'./general/Stats.cpp' || echo './'`./general/Stats.cpp
mv -f .deps/Stats.Tpo .deps/Stats.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Help.o -MD -MP -MF .deps/Help.Tpo -c -o Help.o `test -f './Help.cpp' || 
echo './'`./Help.cpp
mv -f .deps/Help.Tpo .deps/Help.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Alignment.o -MD -MP -MF .deps/Alignment.Tpo -c -o Alignment.o `test -f 
'./alignment/Alignment.cpp' || echo './'`./alignment/Alignment.cpp
mv -f .deps/Alignment.Tpo .deps/Alignment.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT AlignmentOutput.o -MD -MP -MF .deps/AlignmentOutput.Tpo -c -o 
AlignmentOutput.o `test -f './alignment/AlignmentOutput.cpp' || echo 
'./'`./alignment/AlignmentOutput.cpp
mv -f .deps/AlignmentOutput.Tpo .deps/AlignmentOutput.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT ObjectiveScore.o -MD -MP -MF .deps/ObjectiveScore.Tpo -c -o 
ObjectiveScore.o `test -f './alignment/ObjectiveScore.cpp' || echo 
'./'`./alignment/ObjectiveScore.cpp
mv -f .deps/ObjectiveScore.Tpo .deps/ObjectiveScore.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Sequence.o -MD -MP -MF .deps/Sequence.Tpo -c -o Sequence.o `test -f 
'./alignment/Sequence.cpp' || echo './'`./alignment/Sequence.cpp
mv -f .deps/Sequence.Tpo .deps/Sequence.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT Clustal.o -MD -MP -MF .deps/Clustal.Tpo -c -o Clustal.o `test -f 
'./Clustal.cpp' || echo './'`./Clustal.cpp
mv -f .deps/Clustal.Tpo .deps/Clustal.Po
/nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I.     -O2 -pipe -G0 -fno-strict-aliasing 
-MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o `test -f './main.cpp' || 
echo './'`./main.cpp
mv -f .deps/main.Tpo .deps/main.Po
/nxb-bin/usr/bin/c++  -O2 -pipe -G0 -fno-strict-aliasing    -o clustalw2 
FullPairwiseAlign.o  FastPairwiseAlign.o MSFFileParser.o  FileReader.o 
PIRFileParser.o  RSFFileParser.o GDEFileParser.o  InFileStream.o 
ClustalFileParser.o  PearsonFileParser.o FileParser.o  EMBLFileParser.o 
RootedClusterTree.o  UPGMAAlgorithm.o Node.o  RootedGuideTree.o 
RootedTreeOutput.o  Tree.o ClusterTree.o TreeInterface.o  UnRootedClusterTree.o 
ClusterTreeOutput.o  RandomGenerator.o NJTree.o  AlignmentSteps.o 
InteractiveMenu.o  CommandLineParser.o SubMatrix.o  Iteration.o MSA.o  
MyersMillerProfileAlign.o ProfileStandard.o  ProfileWithSub.o ProfileBase.o  
LowScoreSegProfile.o OutputFile.o  UserParameters.o Utility.o  
InvalidCombination.o DebugLog.o  ClustalWResources.o VectorOutOfRange.o  
SymMatrix.o Stats.o Help.o  Alignment.o AlignmentOutput.o  ObjectiveScore.o 
Sequence.o Clustal.o  main.o  
Iteration.o: In function 
`clustalw::Iteration::removeFirstIterate(clustalw::Alignment*)':
Iteration.cpp:(.text+0xcb4): warning: warning: tmpnam() possibly used unsafely; 
consider using mkstemp()
===========================================================================
=======================<phase: run-depends    >============================
===========================================================================
=======================<phase: stage          >============================
===>  Staging for clustalw-2.1_1
===>   Generating temporary packing list
Making install in m4
test -z "/usr/local/share/aclocal" || /bin/mkdir -p 
"/wrkdirs/usr/ports/biology/clustalw/work/stage/usr/local/share/aclocal"
Making install in src
test -z "/usr/local/bin" || /bin/mkdir -p 
"/wrkdirs/usr/ports/biology/clustalw/work/stage/usr/local/bin"
  install  -s -m 555 clustalw2 
'/wrkdirs/usr/ports/biology/clustalw/work/stage/usr/local/bin'
/bin/ln -sf clustalw2 
/wrkdirs/usr/ports/biology/clustalw/work/stage/usr/local/bin/clustalw
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package        >============================
===>  Building package for clustalw-2.1_1
pkg-static: "/var/run/ld-elf.so.hints": invalid file format
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/clustalw
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