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Maintainer: jan.lent...@web.de Last committer: m...@freebsd.org Ident: $FreeBSD: head/biology/treepuzzle/Makefile 340722 2014-01-22 17:00:46Z mat $ Log URL: http://beefy7.nyi.freebsd.org/data/head-mips-default/p402431_s291353/logs/treepuzzle-5.2.log Build URL: http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p402431_s291353 Log: ====>> Building biology/treepuzzle build started at Thu Nov 26 09:32:57 UTC 2015 port directory: /usr/ports/biology/treepuzzle building for: FreeBSD head-mips-default-job-21 11.0-CURRENT FreeBSD 11.0-CURRENT r291353 mips maintained by: jan.lent...@web.de Makefile ident: $FreeBSD: head/biology/treepuzzle/Makefile 340722 2014-01-22 17:00:46Z mat $ Poudriere version: 3.1.10 Host OSVERSION: 1100085 Jail OSVERSION: 1100090 !!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o OSVERSION=1100090 UNAME_v=FreeBSD 11.0-CURRENT r291353 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=treepuzzle-5.2 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool MASTERNAME=head-mips-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.10 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work HOME=/wrkdirs/usr/ports/biology/treepuzzle/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/treepuzzle/work HOME=/wrkdirs/usr/ports/biology/treepuzzle/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/treepuzzle" EXAMPLESDIR="share/examples/treepuzzle" DATADIR="share/treepuzzle" WWWDIR="www/treepuzzle" ETCDIR="etc/treepuzzle" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/treepuzzle DOCSDIR=/usr/local/share/doc/treepuzzle EXAMPLESDIR=/usr/local/share/examples/treepuzzle WWWDIR=/usr/local/www/treepuzzle ETCDIR=/usr/local/etc/treepuzzle --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex <snip> ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.6.2.txz [head-mips-default-job-21] Installing pkg-1.6.2... [head-mips-default-job-21] Extracting pkg-1.6.2: .......... done Message from pkg-1.6.2: If you are upgrading from the old package format, first run: # pkg2ng ===> treepuzzle-5.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of treepuzzle-5.2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by treepuzzle-5.2 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by treepuzzle-5.2 for building => SHA256 Checksum OK for tree-puzzle-5.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by treepuzzle-5.2 for building ===> Extracting for treepuzzle-5.2 => SHA256 Checksum OK for tree-puzzle-5.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for treepuzzle-5.2 =========================================================================== =======================<phase: build-depends >============================ =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for treepuzzle-5.2 --------------------------------------------- If you want to install the parallel version of tree-puzzle, you need to install from the ports and have to have a MPI-Implementation on your system. The tree-puzzle configure script will then automatically build the normal and parallel version (puzzle & ppuzzle). --------------------------------------------- configure: loading site script /usr/ports/Templates/config.site checking build system type... mips-portbld-freebsd11.0 checking host system type... mips-portbld-freebsd11.0 checking target system type... mips-portbld-freebsd11.0 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for gawk... (cached) /usr/bin/awk checking whether make sets ${MAKE}... yes checking for gcc... /nxb-bin/usr/bin/cc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /nxb-bin/usr/bin/cc accepts -g... yes checking for style of include used by make... GNU checking dependency style of /nxb-bin/usr/bin/cc... gcc3 checking whether /nxb-bin/usr/bin/cc and cc understand -c and -o together... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether make sets ${MAKE}... (cached) yes checking for mpcc... no checking for hcc... no checking for mpicc... no checking for mpicc_lam... no checking for mpicc_mpich... no checking for cc... /usr/bin/cc checking whether /usr/bin/cc works as MPI compiler... no checking whether /usr/bin/cc needs -lmpi... no checking whether /nxb-bin/usr/bin/cc handles quotes correctly... yes checking for main in -lm... yes checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for limits.h... (cached) yes checking for /nxb-bin/usr/bin/cc option to accept ANSI C... none needed checking for an ANSI C-conforming const... yes checking for size_t... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating src/sprng/Makefile config.status: creating doc/Makefile config.status: creating data/Makefile config.status: creating tests/Makefile config.status: creating src/config.h config.status: executing depfiles commands =========================================================================== =======================<phase: build >============================ ===> Building for treepuzzle-5.2 Making all in src /nxb-bin/usr/bin/make all-recursive Making all in sprng /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -G0 -c makeseed.c /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -G0 -c store.c /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -G0 -c memory.c /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -G0 -c checkid.c /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -G0 -c lcg64.c /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing -G0 -c primes-lcg64.c primes-lcg64.c: In function 'getprime': primes-lcg64.c:75: warning: incompatible implicit declaration of built-in function 'memcpy' /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./gamma.c && mv gamma.o sgamma.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./ml1.c && mv ml1.o sml1.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./ml2.c && mv ml2.o sml2.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./mlparam.c && mv mlparam.o smlparam.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./model1.c && mv model1.o smodel1.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./model2.c && mv model2.o smodel2.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./puzzle1.c && mv puzzle1.o spuzzle1.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./puzzle2.c && mv puzzle2.o spuzzle2.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./pstep.c && mv pstep.o spstep.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./util.c && mv util.o sutil.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./consensus.c && mv consensus.o sconsensus.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./treesort.c && mv treesort.o streesort.o /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I. -I./sprng -O2 -pipe -G0 -fno-strict-aliasing -c ./treetest.c && mv treetest.o streetest.o cd sprng && /nxb-bin/usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o `makeseed.o' is up to date. `store.o' is up to date. `memory.o' is up to date. `checkid.o' is up to date. `lcg64.o' is up to date. `primes-lcg64.o' is up to date. /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle Making all in doc Making all in data Making all in tests =========================================================================== =======================<phase: run-depends >============================ =========================================================================== =======================<phase: stage >============================ ===> Staging for treepuzzle-5.2 ===> Generating temporary packing list Making install in src Making install in sprng cd sprng && /nxb-bin/usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o `makeseed.o' is up to date. `store.o' is up to date. `memory.o' is up to date. `checkid.o' is up to date. `lcg64.o' is up to date. `primes-lcg64.o' is up to date. /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle cd sprng && /nxb-bin/usr/bin/make makeseed.o store.o memory.o checkid.o lcg64.o primes-lcg64.o `makeseed.o' is up to date. `store.o' is up to date. `memory.o' is up to date. `checkid.o' is up to date. `lcg64.o' is up to date. `primes-lcg64.o' is up to date. /nxb-bin/usr/bin/cc -O2 -pipe -G0 -fno-strict-aliasing sgamma.o sml1.o sml2.o smlparam.o smodel1.o smodel2.o spuzzle1.o spuzzle2.o spstep.o sutil.o sconsensus.o streesort.o streetest.o sprng/makeseed.o sprng/store.o sprng/memory.o sprng/checkid.o sprng/lcg64.o sprng/primes-lcg64.o -lm -o puzzle /bin/sh ../mkinstalldirs /wrkdirs/usr/ports/biology/treepuzzle/work/stage/usr/local/bin install -s -m 555 puzzle /wrkdirs/usr/ports/biology/treepuzzle/work/stage/usr/local/bin/puzzle Making install in doc Making install in data Making install in tests ====> Compressing man pages (compress-man) =========================================================================== =======================<phase: package >============================ ===> Building package for treepuzzle-5.2 pkg-static: "/var/run/ld-elf.so.hints": invalid file format *** Error code 1 Stop. make: stopped in /usr/ports/biology/treepuzzle _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
