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Maintainer:     syl...@freebsd.org
Last committer: b...@freebsd.org
Ident:          $FreeBSD: head/biology/mummer/Makefile 327709 2013-09-20 
15:55:44Z bapt $
Log URL:        
http://beefy2.isc.freebsd.org/bulk/10amd64-default/2013-10-17_07h20m58s/logs/mummer-3.23.log
Build URL:      
http://beefy2.isc.freebsd.org/bulk/10amd64-default/2013-10-17_07h20m58s
Log:

====>> Building biology/mummer
build started at Thu Oct 17 15:17:39 UTC 2013
port directory: /usr/ports/biology/mummer
building for: FreeBSD 10amd64-default-job-15 10.0-BETA1 FreeBSD 10.0-BETA1 
r256420 amd64
maintained by: syl...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/mummer/Makefile 327709 2013-09-20 
15:55:44Z bapt $
Poudriere version: 3.1-pre

---Begin Environment---
OSVERSION=1000500
UNAME_v=FreeBSD 10.0-BETA1 r256420
UNAME_r=10.0-BETA1
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/10amd64-default/ref
PKG_EXT=txz
tpid=56510
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=mummer-3.23
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=10amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local 
 LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing"  CPP="cpp" 
CPPFLAGS=""  LDFLAGS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing"  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 
555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  
BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/mummer
DOCSDIR=/usr/local/share/doc/mummer
EXAMPLESDIR=/usr/local/share/examples/mummer
WWWDIR=/usr/local/www/mummer
ETCDIR=/usr/local/etc/mummer
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for mummer-3.23
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   mummer-3.23 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.1.4_8.txz
Installing pkg-1.1.4_8... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of mummer-3.23
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by mummer-3.23 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by mummer-3.23 for building
=> SHA256 Checksum OK for MUMmer3.23.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by mummer-3.23 for building
===>  Extracting for mummer-3.23
=> SHA256 Checksum OK for MUMmer3.23.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for mummer-3.23
===========================================================================
=======================<phase: build-depends  >============================
===>   mummer-3.23 depends on executable: gmake - not found
===>    Verifying install for gmake in /usr/ports/devel/gmake
===>   Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1...Installing gettext-0.18.3.1... done
 done
===>   Returning to build of mummer-3.23
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for mummer-3.23
===========================================================================
=======================<phase: build          >============================
===>  Building for mummer-3.23
gcc: not found
g++: not found
perl: not found
gmake[1]: Entering directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23'
cd /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz; gmake mummer
gmake[2]: Entering directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz'
cd libbasedir; gmake libbase.a
gmake[3]: Entering directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/libbasedir'
O3   -c -o cleanMUMcand.o cleanMUMcand.c
gmake[3]: O3: Command not found
gmake[3]: [cleanMUMcand.o] Error 127 (ignored)
O3   -c -o clock.o clock.c
gmake[3]: O3: Command not found
gmake[3]: [clock.o] Error 127 (ignored)
O3   -c -o mapfile.o mapfile.c
gmake[3]: O3: Command not found
gmake[3]: [mapfile.o] Error 127 (ignored)
O3   -c -o multiseq.o multiseq.c
gmake[3]: O3: Command not found
gmake[3]: [multiseq.o] Error 127 (ignored)
O3   -c -o procopt.o procopt.c
gmake[3]: O3: Command not found
gmake[3]: [procopt.o] Error 127 (ignored)
O3   -c -o safescpy.o safescpy.c
gmake[3]: O3: Command not found
gmake[3]: [safescpy.o] Error 127 (ignored)
O3   -c -o seterror.o seterror.c
gmake[3]: O3: Command not found
gmake[3]: [seterror.o] Error 127 (ignored)
O3   -c -o space.o space.c
gmake[3]: O3: Command not found
gmake[3]: [space.o] Error 127 (ignored)
ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o 
safescpy.o seterror.o space.o
ar: warning: creating libbase.a
ar: warning: can't open file: cleanMUMcand.o: No such file or directory
ar: warning: can't open file: clock.o: No such file or directory
ar: warning: can't open file: mapfile.o: No such file or directory
ar: warning: can't open file: multiseq.o: No such file or directory
ar: warning: can't open file: procopt.o: No such file or directory
ar: warning: can't open file: safescpy.o: No such file or directory
ar: warning: can't open file: seterror.o: No such file or directory
ar: warning: can't open file: space.o: No such file or directory
gmake[3]: Leaving directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/libbasedir'
cd streesrc; gmake libstree.a
gmake[3]: Entering directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/streesrc'
O3 -I../libbasedir -DSTREEHUGE   -c -o construct.o construct.c
gmake[3]: O3: Command not found
gmake[3]: [construct.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o access.o access.c
gmake[3]: O3: Command not found
gmake[3]: [access.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o scanpref.o scanpref.c
gmake[3]: O3: Command not found
gmake[3]: [scanpref.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o linkloc.o linkloc.c
gmake[3]: O3: Command not found
gmake[3]: [linkloc.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o depthtab.o depthtab.c
gmake[3]: O3: Command not found
gmake[3]: [depthtab.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o ex2leav.o ex2leav.c
gmake[3]: O3: Command not found
gmake[3]: [ex2leav.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o dfs.o dfs.c
gmake[3]: O3: Command not found
gmake[3]: [dfs.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o overmax.o overmax.c
gmake[3]: O3: Command not found
gmake[3]: [overmax.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o oversucc.o oversucc.c
gmake[3]: O3: Command not found
gmake[3]: [oversucc.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o addleafcount.o addleafcount.c
gmake[3]: O3: Command not found
gmake[3]: [addleafcount.o] Error 127 (ignored)
O3 -I../libbasedir -DSTREEHUGE   -c -o iterator.o iterator.c
gmake[3]: O3: Command not found
gmake[3]: [iterator.o] Error 127 (ignored)
ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o 
ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o
ar: warning: creating libstree.a
ar: warning: can't open file: construct.o: No such file or directory
ar: warning: can't open file: access.o: No such file or directory
ar: warning: can't open file: scanpref.o: No such file or directory
ar: warning: can't open file: linkloc.o: No such file or directory
ar: warning: can't open file: depthtab.o: No such file or directory
ar: warning: can't open file: ex2leav.o: No such file or directory
ar: warning: can't open file: dfs.o: No such file or directory
ar: warning: can't open file: overmax.o: No such file or directory
ar: warning: can't open file: oversucc.o: No such file or directory
ar: warning: can't open file: addleafcount.o: No such file or directory
ar: warning: can't open file: iterator.o: No such file or directory
gmake[3]: Leaving directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/streesrc'
cd mm3src; gmake mummer
gmake[3]: Entering directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/mm3src'
O3 -I../libbasedir -I../streesrc   -c -o maxmat3.o maxmat3.c
gmake[3]: O3: Command not found
gmake[3]: [maxmat3.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc   -c -o maxmatopt.o maxmatopt.c
gmake[3]: O3: Command not found
gmake[3]: [maxmatopt.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc   -c -o maxmatinp.o maxmatinp.c
gmake[3]: O3: Command not found
gmake[3]: [maxmatinp.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc   -c -o findmumcand.o findmumcand.c
gmake[3]: O3: Command not found
gmake[3]: [findmumcand.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc   -c -o findmaxmat.o findmaxmat.c
gmake[3]: O3: Command not found
gmake[3]: [findmaxmat.o] Error 127 (ignored)
O3 -I../libbasedir -I../streesrc   -c -o procmaxmat.o procmaxmat.c
gmake[3]: O3: Command not found
gmake[3]: [procmaxmat.o] Error 127 (ignored)
maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o 
../streesrc/libstree.a ../libbasedir/libbase.a \
-o /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer; chmod 755 
/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer
maxmat3.o: not found
chmod: /wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/mummer: No such file 
or directory
gmake[3]: *** [mummer] Error 1
gmake[3]: Leaving directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz/mm3src'
gmake[2]: *** [mummer] Error 2
gmake[2]: Leaving directory 
`/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23/src/kurtz'
gmake[1]: *** [kurtz] Error 2
gmake[1]: Leaving directory `/wrkdirs/usr/ports/biology/mummer/work/MUMmer3.23'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/mummer
===>  Cleaning for mummer-3.23
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