You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdpo...@fsfe.org
Last committer: mar...@freebsd.org
Ident:          $FreeBSD: head/biology/seqan/Makefile 381791 2015-03-21 
11:53:27Z marino $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p402431_s291353/logs/seqan-1.3.1_3.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p402431_s291353
Log:

====>> Building biology/seqan
build started at Sun Nov 29 14:11:43 UTC 2015
port directory: /usr/ports/biology/seqan
building for: FreeBSD head-armv6-default-job-24 11.0-CURRENT FreeBSD 
11.0-CURRENT r291353 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:      $FreeBSD: head/biology/seqan/Makefile 381791 2015-03-21 
11:53:27Z marino $
Poudriere version: 3.1.10
Host OSVERSION: 1100085
Jail OSVERSION: 1100090




!!! Jail is newer than host. (Jail: 1100090, Host: 1100085) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100090
UNAME_v=FreeBSD 11.0-CURRENT r291353
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=seqan-1.3.1_3
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.10
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan/work  
HOME=/wrkdirs/usr/ports/biology/seqan/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan/work  
HOME=/wrkdirs/usr/ports/biology/seqan/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" 
AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc48" CFLAGS="-O2 -pipe 
-mfloat-abi=softfp  -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing"  
CPP="cpp48" CPPFLAGS=""  LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc48 
-L/usr/local/lib/gcc48" LIBS=""  CXX="g++48" CXXFLAGS="-O2 -pipe 
-mfloat-abi=softfp -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc48"  MANPREFIX="/
 usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  
-s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 
0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
PYTHON_INCLUDEDIR=include/python2.7
PYTHON_LIBDIR=lib/python2.7
PYTHON_PLATFORM=freebsd11
PYTHON_SITELIBDIR=lib/python2.7/site-packages
PYTHON_VERSION=python2.7
PYTHON_VER=2.7
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/seqan"
EXAMPLESDIR="share/examples/seqan"
DATADIR="share/seqan"
WWWDIR="www/seqan"
ETCDIR="etc/seqan"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/seqan
DOCSDIR=/usr/local/share/doc/seqan
EXAMPLESDIR=/usr/local/share/examples/seqan
WWWDIR=/usr/local/www/seqan
ETCDIR=/usr/local/etc/seqan
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
<snip>
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   seqan-1.3.1_3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.6.2.txz
[head-armv6-default-job-24] Installing pkg-1.6.2...
[head-armv6-default-job-24] Extracting pkg-1.6.2: .......... done
Message from pkg-1.6.2:
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   seqan-1.3.1_3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of seqan-1.3.1_3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-1.3.1_3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-1.3.1_3 for building
=> SHA256 Checksum OK for seqan-1.3.1.zip.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-1.3.1_3 for building
===>  Extracting for seqan-1.3.1_3
=> SHA256 Checksum OK for seqan-1.3.1.zip.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for seqan-1.3.1_3
===>  Applying FreeBSD patches for seqan-1.3.1_3
===========================================================================
=======================<phase: build-depends  >============================
===>   seqan-1.3.1_3 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.3.1.txz
[head-armv6-default-job-24] Installing cmake-3.3.1...
[head-armv6-default-job-24] `-- Installing expat-2.1.0_3...
[head-armv6-default-job-24] `-- Extracting expat-2.1.0_3: .......... done
[head-armv6-default-job-24] `-- Installing cmake-modules-3.3.1...
[head-armv6-default-job-24] `-- Extracting cmake-modules-3.3.1: .......... done
[head-armv6-default-job-24] `-- Installing curl-7.45.0...
[head-armv6-default-job-24] |   `-- Installing ca_root_nss-3.20.1...
[head-armv6-default-job-24] |   `-- Extracting ca_root_nss-3.20.1: ....... done
[head-armv6-default-job-24] `-- Extracting curl-7.45.0: .......... done
[head-armv6-default-job-24] `-- Installing libarchive-3.1.2_4,1...
[head-armv6-default-job-24] |   `-- Installing lzo2-2.09...
[head-armv6-default-job-24] |   `-- Extracting lzo2-2.09: .......... done
[head-armv6-default-job-24] `-- Extracting libarchive-3.1.2_4,1: .......... done
[head-armv6-default-job-24] `-- Installing jsoncpp-0.6.0.r2_2...
[head-armv6-default-job-24] `-- Extracting jsoncpp-0.6.0.r2_2: .......... done
[head-armv6-default-job-24] Extracting cmake-3.3.1: .......... done
Message from ca_root_nss-3.20.1:
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   seqan-1.3.1_3 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of seqan-1.3.1_3
===>   seqan-1.3.1_3 depends on file: /usr/local/bin/python2.7 - not found
===>   Installing existing package /packages/All/python27-2.7.10_1.txz
[head-armv6-default-job-24] Installing python27-2.7.10_1...
[head-armv6-default-job-24] `-- Installing libffi-3.2.1...
[head-armv6-default-job-24] |   `-- Installing indexinfo-0.2.4...
[head-armv6-default-job-24] |   `-- Extracting indexinfo-0.2.4: .... done
[head-armv6-default-job-24] `-- Extracting libffi-3.2.1: .......... done
[head-armv6-default-job-24] `-- Installing gettext-runtime-0.19.6...
[head-armv6-default-job-24] `-- Extracting gettext-runtime-0.19.6: .......... 
done
[head-armv6-default-job-24] `-- Installing readline-6.3.8...
[head-armv6-default-job-24] `-- Extracting readline-6.3.8: .......... done
[head-armv6-default-job-24] Extracting python27-2.7.10_1: .......... done
Message from python27-2.7.10_1:
===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
===>   seqan-1.3.1_3 depends on file: /usr/local/bin/python2.7 - found
===>   Returning to build of seqan-1.3.1_3
===>   seqan-1.3.1_3 depends on executable: gcc48 - not found
===>   Installing existing package /packages/All/gcc-4.8.5_2.txz
[head-armv6-default-job-24] Installing gcc-4.8.5_2...
[head-armv6-default-job-24] `-- Installing mpc-1.0.3...
[head-armv6-default-job-24] |   `-- Installing gmp-5.1.3_2...
[head-armv6-default-job-24] |   `-- Extracting gmp-5.1.3_2: .......... done
[head-armv6-default-job-24] |   `-- Installing mpfr-3.1.2_2...
[head-armv6-default-job-24] |   `-- Extracting mpfr-3.1.2_2: .......... done
[head-armv6-default-job-24] `-- Extracting mpc-1.0.3: ...... done
[head-armv6-default-job-24] `-- Installing binutils-2.25.1...
[head-armv6-default-job-24] `-- Extracting binutils-2.25.1: .......... done
[head-armv6-default-job-24] Extracting gcc-4.8.5_2: .......... done
Message from gcc-4.8.5_2:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc48

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
===>   seqan-1.3.1_3 depends on executable: gcc48 - found
===>   Returning to build of seqan-1.3.1_3
===>   seqan-1.3.1_3 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for seqan-1.3.1_3
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/seqan/work/.build
-- The C compiler identification is GNU 4.8.5
-- The CXX compiler identification is GNU 4.8.5
-- Check for working C compiler: /usr/local/bin/gcc48
-- Check for working C compiler: /usr/local/bin/gcc48 -- works
-- Detecting C compiler ABI info
CMake Error: Generator: execution of make failed. Make command was: 
"/usr/bin/make" "cmTC_4331a/fast"
-- Detecting C compiler ABI info - failed
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/local/bin/g++48
-- Check for working CXX compiler: /usr/local/bin/g++48 -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.10") 
Determining GCC version.
  GCC version is g++48 (FreeBSD Ports Collection) 4.8.5
Copyright (C) 2015 Free Software Foundation, Inc.
This is free software see the source for copying conditions.  There is NO
warranty not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY
-- Performing Test TR1_SHARED_PTR_USE_TR1_MEMORY - Success
-- Performing Test TR1_SHARED_PTR_USE_MEMORY
-- Performing Test TR1_SHARED_PTR_USE_MEMORY - Failed
-- Configuring incomplete, errors occurred!
See also 
"/wrkdirs/usr/ports/biology/seqan/work/.build/CMakeFiles/CMakeOutput.log".
See also 
"/wrkdirs/usr/ports/biology/seqan/work/.build/CMakeFiles/CMakeError.log".
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/seqan
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