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Maintainer: [email protected] Log URL: https://pkg-status.freebsd.org/beefy22/data/143amd64-default/226b23044ee7/logs/arbor-0.12.1.log Build URL: https://pkg-status.freebsd.org/beefy22/build.html?mastername=143amd64-default&build=226b23044ee7 Log: =>> Building science/arbor build started at Thu Jun 4 01:30:02 UTC 2026 port directory: /usr/ports/science/arbor package name: arbor-0.12.1 building for: FreeBSD 143amd64-default-job-09 14.3-RELEASE-p14 FreeBSD 14.3-RELEASE-p14 amd64 maintained by: [email protected] Makefile datestamp: -rw-r--r-- 1 root wheel 1883 May 30 01:01 /usr/ports/science/arbor/Makefile Ports top last git commit: 226b23044ee7ea8141309e217f14c14c7c3fe02b Ports top unclean checkout: no Port dir last git commit: 31d321ac0bed3a49086ffbeff3ef1d70ab1f8220 Port dir unclean checkout: no Poudriere version: poudriere-git-3.4.8 Host OSVERSION: 1600018 Jail OSVERSION: 1403000 Job Id: 09 ---Begin Environment--- SHELL=/bin/sh OSVERSION=1403000 UNAME_v=FreeBSD 14.3-RELEASE-p14 UNAME_r=14.3-RELEASE-p14 BLOCKSIZE=K MAIL=/var/mail/root MM_CHARSET=UTF-8 LANG=C.UTF-8 STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin MAKE_OBJDIR_CHECK_WRITABLE=0 LOCALBASE=/usr/local USER=root POUDRIERE_NAME=poudriere-git LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.4.8 MASTERMNT=/usr/local/poudriere/data/.m/143amd64-default/ref LC_COLLATE=C POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= OUTPUT_REDIRECTED_STDERR=4 OUTPUT_REDIRECTED=1 PWD=/usr/local/poudriere/data/.m/143amd64-default/09/.p OUTPUT_REDIRECTED_STDOUT=3 P_PORTS_FEATURES=FLAVORS SUBPACKAGES SELECTED_OPTIONS MASTERNAME=143amd64-default SCRIPTPREFIX=/usr/local/share/poudriere SCRIPTNAME=bulk.sh OLDPWD=/usr/local/poudriere/data/.m/143amd64-default/ref/.p/pool POUDRIERE_PKGNAME=poudriere-git-3.4.8 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for arbor-0.12.1: NATIVE=off: Use native optimization (-march=native) ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- [email protected] --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- CPM_REPO=/wrkdirs/usr/ports/science/arbor/work/CPM.cmake-0.39.0 PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python3.11" XDG_DATA_HOME=/wrkdirs/usr/ports/science/arbor/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/arbor/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/arbor/work/.cache HOME=/wrkdirs/usr/ports/science/arbor/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/arbor/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/arbor/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- NINJA_STATUS="[%p %s/%t] " XDG_DATA_HOME=/wrkdirs/usr/ports/science/arbor/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/arbor/work XDG_CACHE_HOME=/wrkdirs/usr/ports/science/arbor/work/.cache HOME=/wrkdirs/usr/ports/science/arbor/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/arbor/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin PKG_CONFIG_LIBDIR=/wrkdirs/usr/ports/science/arbor/work/.pkgconfig:/usr/local/libdata/pkgconfig:/usr/local/share/pkgconfig:/usr/libdata/pkgconfig MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/science/arbor/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -L/usr/local/lib -lunits " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-al iasing -D_LIBCPP_HARDENING_MODE=_LIBCPP_HARDENING_MODE_NONE -isystem /usr/local/include " BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.11 PYTHON_LIBDIR=lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" OSREL=14.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/arbor" EXAMPLESDIR="share/examples/arbor" DATADIR="share/arbor" WWWDIR="www/arbor" ETCDIR="etc/arbor" --End PLIST_SUB-- --SUB_LIST-- PYTHON_INCLUDEDIR=/usr/local/include/python3.11 PYTHON_LIBDIR=/usr/local/lib/python3.11 PYTHON_PLATFORM=freebsd14 PYTHON_SITELIBDIR=/usr/local/lib/python3.11/site-packages PYTHON_SUFFIX=311 PYTHON_BASESUFFIX=311 PYTHON_TAG=.cpython-311 PYTHON_SOABI=.cpython-311 PYTHON_VER=3.11 PYTHON_BASEVER=3.11 PYTHON_VERSION=python3.11 PYTHON2="@comment " PYTHON3="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/arbor DOCSDIR=/usr/local/share/doc/arbor EXAMPLESDIR=/usr/local/share/examples/arbor WWWDIR=/usr/local/www/arbor ETCDIR=/usr/local/etc/arbor --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 3 jobs MAKE_JOBS_NUMBER=3 #### Misc Poudriere #### .include "/etc/make.conf.ports_env" GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 8192 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited pipebuf (-y) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> arbor-0.12.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-2.7.5.pkg [143amd64-default-job-09] Installing pkg-2.7.5... [143amd64-default-job-09] Extracting pkg-2.7.5: .......... done ===> arbor-0.12.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of arbor-0.12.1 =========================================================================== =======================<phase: fetch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: fetch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by arbor-0.12.1 for building =========================================================================== =======================<phase: checksum >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by arbor-0.12.1 for building => SHA256 Checksum OK for arbor-sim-arbor-v0.12.1_GH0.tar.gz. => SHA256 Checksum OK for cpm-cmake-CPM.cmake-v0.39.0_GH0.tar.gz. => SHA256 Checksum OK for martinus-unordered_dense-v4.5.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: extract >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by arbor-0.12.1 for building ===> Extracting for arbor-0.12.1 => SHA256 Checksum OK for arbor-sim-arbor-v0.12.1_GH0.tar.gz. => SHA256 Checksum OK for cpm-cmake-CPM.cmake-v0.39.0_GH0.tar.gz. => SHA256 Checksum OK for martinus-unordered_dense-v4.5.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 =========================================================================== =======================<phase: patch >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Patching for arbor-0.12.1 ===> Applying FreeBSD patches for arbor-0.12.1 from /usr/ports/science/arbor/files =========================================================================== =======================<phase: build-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> arbor-0.12.1 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.3.12.pkg [143amd64-default-job-09] Installing bash-5.3.12... [143amd64-default-job-09] `-- Installing gettext-runtime-1.0_1... [143amd64-default-job-09] | `-- Installing indexinfo-0.3.1_1... [143amd64-default-job-09] | `-- Extracting indexinfo-0.3.1_1: .... done [143amd64-default-job-09] `-- Extracting gettext-runtime-1.0_1: .......... done [143amd64-default-job-09] Extracting bash-5.3.12: .......... done ===> arbor-0.12.1 depends on executable: bash - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on package: libfmt>0 - not found ===> Installing existing package /packages/All/libfmt-12.1.0.pkg [143amd64-default-job-09] Installing libfmt-12.1.0... [143amd64-default-job-09] Extracting libfmt-12.1.0: .......... done ===> arbor-0.12.1 depends on package: libfmt>0 - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on package: nlohmann-json>0 - not found ===> Installing existing package /packages/All/nlohmann-json-3.12.0_1.pkg [143amd64-default-job-09] Installing nlohmann-json-3.12.0_1... [143amd64-default-job-09] Extracting nlohmann-json-3.12.0_1: .......... done ===> arbor-0.12.1 depends on package: nlohmann-json>0 - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on package: random123>0 - not found ===> Installing existing package /packages/All/random123-1.14.0.5.pkg [143amd64-default-job-09] Installing random123-1.14.0.5... [143amd64-default-job-09] Extracting random123-1.14.0.5: .......... done ===> arbor-0.12.1 depends on package: random123>0 - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on package: py311-svgwrite>0 - not found ===> Installing existing package /packages/All/py311-svgwrite-1.4.3_1.pkg [143amd64-default-job-09] Installing py311-svgwrite-1.4.3_1... [143amd64-default-job-09] `-- Installing python311-3.11.15_2... [143amd64-default-job-09] | `-- Installing libffi-3.5.1... [143amd64-default-job-09] | `-- Extracting libffi-3.5.1: .......... done [143amd64-default-job-09] | `-- Installing mpdecimal-4.0.1... [143amd64-default-job-09] | `-- Extracting mpdecimal-4.0.1: .......... done [143amd64-default-job-09] | `-- Installing readline-8.3.3... [143amd64-default-job-09] | `-- Extracting readline-8.3.3: .......... done [143amd64-default-job-09] `-- Extracting python311-3.11.15_2: .......... done [143amd64-default-job-09] Extracting py311-svgwrite-1.4.3_1: .......... done ===== Message from python311-3.11.15_2: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py311-gdbm databases/py-gdbm@py311 py311-sqlite3 databases/py-sqlite3@py311 py311-tkinter x11-toolkits/py-tkinter@py311 ===> arbor-0.12.1 depends on package: py311-svgwrite>0 - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on package: tinyopt>0 - not found ===> Installing existing package /packages/All/tinyopt-1.0.8.pkg [143amd64-default-job-09] Installing tinyopt-1.0.8... [143amd64-default-job-09] Extracting tinyopt-1.0.8: .... done ===> arbor-0.12.1 depends on package: tinyopt>0 - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on file: /usr/local/lib/cmake/GTest/GTestConfig.cmake - not found ===> Installing existing package /packages/All/googletest-1.16.0.pkg [143amd64-default-job-09] Installing googletest-1.16.0... [143amd64-default-job-09] Extracting googletest-1.16.0: .......... done ===> arbor-0.12.1 depends on file: /usr/local/lib/cmake/GTest/GTestConfig.cmake - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-core-3.31.12.pkg [143amd64-default-job-09] Installing cmake-core-3.31.12... [143amd64-default-job-09] `-- Installing expat-2.8.1... [143amd64-default-job-09] `-- Extracting expat-2.8.1: .......... done [143amd64-default-job-09] `-- Installing jsoncpp-1.9.6_1... [143amd64-default-job-09] `-- Extracting jsoncpp-1.9.6_1: .......... done [143amd64-default-job-09] `-- Installing libidn2-2.3.8... [143amd64-default-job-09] | `-- Installing libunistring-1.4.2... [143amd64-default-job-09] | `-- Extracting libunistring-1.4.2: .......... done [143amd64-default-job-09] `-- Extracting libidn2-2.3.8: .......... done [143amd64-default-job-09] `-- Installing libuv-1.52.1... [143amd64-default-job-09] `-- Extracting libuv-1.52.1: .......... done [143amd64-default-job-09] `-- Installing rhash-1.4.6... [143amd64-default-job-09] `-- Extracting rhash-1.4.6: .......... done [143amd64-default-job-09] Extracting cmake-core-3.31.12: .......... done ===> arbor-0.12.1 depends on file: /usr/local/bin/cmake - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.13.2,4.pkg [143amd64-default-job-09] Installing ninja-1.13.2,4... [143amd64-default-job-09] Extracting ninja-1.13.2,4: ........ done ===> arbor-0.12.1 depends on executable: ninja - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-2.4.3_1,1.pkg [143amd64-default-job-09] Installing pkgconf-2.4.3_1,1... [143amd64-default-job-09] Extracting pkgconf-2.4.3_1,1: .......... done ===> arbor-0.12.1 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on file: /usr/local/bin/python3.11 - found =========================================================================== =======================<phase: lib-depends >============================ ===== env: USE_PACKAGE_DEPENDS_ONLY=1 USER=root UID=0 GID=0 ===> arbor-0.12.1 depends on shared library: libhwloc.so - not found ===> Installing existing package /packages/All/hwloc2-2.12.1_1.pkg [143amd64-default-job-09] Installing hwloc2-2.12.1_1... [143amd64-default-job-09] `-- Installing level-zero-1.28.6... [143amd64-default-job-09] | `-- Installing spdlog-1.17.0... [143amd64-default-job-09] | `-- Extracting spdlog-1.17.0: .......... done [143amd64-default-job-09] `-- Extracting level-zero-1.28.6: .......... done [143amd64-default-job-09] `-- Installing libpciaccess-0.19... [143amd64-default-job-09] | `-- Installing hwdata-0.407,1... [143amd64-default-job-09] | `-- Extracting hwdata-0.407,1: .......... done [143amd64-default-job-09] `-- Extracting libpciaccess-0.19: ........ done [143amd64-default-job-09] `-- Installing libxml2-2.15.3... [143amd64-default-job-09] `-- Extracting libxml2-2.15.3: .......... done [143amd64-default-job-09] Extracting hwloc2-2.12.1_1: .......... done ===> arbor-0.12.1 depends on shared library: libhwloc.so - found (/usr/local/lib/libhwloc.so) ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on shared library: libpugixml.so - not found ===> Installing existing package /packages/All/pugixml-1.15.pkg [143amd64-default-job-09] Installing pugixml-1.15... [143amd64-default-job-09] Extracting pugixml-1.15: .......... done ===> arbor-0.12.1 depends on shared library: libpugixml.so - found (/usr/local/lib/libpugixml.so) ===> Returning to build of arbor-0.12.1 ===> arbor-0.12.1 depends on shared library: libunits.so - not found ===> Installing existing package /packages/All/units-library-0.13.1.pkg [143amd64-default-job-09] Installing units-library-0.13.1... [143amd64-default-job-09] Extracting units-library-0.13.1: .......... done ===> arbor-0.12.1 depends on shared library: libunits.so - found (/usr/local/lib/libunits.so) ===> Returning to build of arbor-0.12.1 =========================================================================== =======================<phase: configure >============================ ===== env: NO_DEPENDS=yes USER=root UID=0 GID=0 ===> Configuring for arbor-0.12.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/arbor/work/.build CMake Warning at /wrkdirs/usr/ports/science/arbor/work/CPM.cmake-0.39.0/cmake/CPM.cmake:76 (message): CPM: Your project is using an unstable development version of CPM.cmake. Please update to a recent release if possible. See https://github.com/cpm-cmake/CPM.cmake for details. Call Stack (most recent call first): cmake/CPM.cmake:13 (include) CMakeLists.txt:22 (include) -- The C compiler identification is Clang 19.1.7 -- The CXX compiler identification is Clang 19.1.7 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test CXX_HAS_NATIVE -- Performing Test CXX_HAS_NATIVE - Success -- Found PkgConfig: /usr/local/bin/pkgconf (found version "2.4.3") -- Found nlohmann_json: /usr/local/share/cmake/nlohmann_json/nlohmann_jsonConfig.cmake (found version "3.12.0") -- CPM: Using local package [email protected] -- CPM: Using local package [email protected] -- CPM: Adding package [email protected] (v1.8.3) CMake Warning at /usr/local/share/cmake/Modules/FetchContent.cmake:2111 (message): FETCHCONTENT_FULLY_DISCONNECTED is set to true, which requires the source directory for dependency benchmark to already be populated. This generally means it must not be set to true the first time CMake is run in a build directory. The following source directory should already be populated, but it doesn't exist: /wrkdirs/usr/ports/science/arbor/work/.build/_deps/benchmark-src Policy CMP0170 controls enforcement of this requirement. Call Stack (most recent call first): /usr/local/share/cmake/Modules/FetchContent.cmake:1978:EVAL:1 (__FetchContent_Populate) /usr/local/share/cmake/Modules/FetchContent.cmake:1978 (cmake_language) /wrkdirs/usr/ports/science/arbor/work/CPM.cmake-0.39.0/cmake/CPM.cmake:1008 (FetchContent_Populate) /wrkdirs/usr/ports/science/arbor/work/CPM.cmake-0.39.0/cmake/CPM.cmake:802 (cpm_fetch_package) /wrkdirs/usr/ports/science/arbor/work/CPM.cmake-0.39.0/cmake/CPM.cmake:306 (CPMAddPackage) CMakeLists.txt:353 (CPMFindPackage) -- Found GTest: /usr/local/lib/cmake/GTest/GTestConfig.cmake (found version "1.16.0") -- CPM: Using local package [email protected] CMake Error at CMakeLists.txt:447 (message): Cannot compile a trivial CXX program using the final compiler flags: -- Configuring incomplete, errors occurred! *** Error code 1 Stop. make: stopped in /usr/ports/science/arbor
