You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwba...@tds.net
Last committer: madpi...@freebsd.org
Ident:          $FreeBSD: head/biology/gmap/Makefile 400336 2015-10-27 
18:49:48Z madpilot $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-mips64-default/p403218_s291949/logs/gmap-2015.09.21.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-mips64-default&build=p403218_s291949
Log:

====>> Building biology/gmap
build started at Fri Dec 18 17:01:07 UTC 2015
port directory: /usr/ports/biology/gmap
building for: FreeBSD head-mips64-default-job-07 11.0-CURRENT FreeBSD 
11.0-CURRENT r291949 mips
maintained by: jwba...@tds.net
Makefile ident:      $FreeBSD: head/biology/gmap/Makefile 400336 2015-10-27 
18:49:48Z madpilot $
Poudriere version: 3.1.10
Host OSVERSION: 1100085
Jail OSVERSION: 1100091




!!! Jail is newer than host. (Jail: 1100091, Host: 1100085) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips64
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100091
UNAME_v=FreeBSD 11.0-CURRENT r291949
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-mips64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=gmap-2015.09.21
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips64-default/ref/.p/pool
MASTERNAME=head-mips64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.10
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for gmap-2015.09.21:
     SIMD=off: Use CPU-specific optimizations
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--disable-builtin-popcount --disable-simd --prefix=/usr/local 
${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gmap/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gmap/work  
HOME=/wrkdirs/usr/ports/biology/gmap/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gmap/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gmap/work  
HOME=/wrkdirs/usr/ports/biology/gmap/work TMPDIR="/tmp" NO_PIE=yes 
SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local  
LIBDIR="/usr/lib"  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  
-fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" 
LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.20.3
PERL_VER=5.20
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.20
DOCSDIR="share/doc/gmap"
EXAMPLESDIR="share/examples/gmap"
DATADIR="share/gmap"
WWWDIR="www/gmap"
ETCDIR="etc/gmap"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/gmap
DOCSDIR=/usr/local/share/doc/gmap
EXAMPLESDIR=/usr/local/share/examples/gmap
WWWDIR=/usr/local/www/gmap
ETCDIR=/usr/local/etc/gmap
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
<snip>
mv -f .deps/gmapl-maxent.Tpo .deps/gmapl-maxent.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-maxent_hr.o -MD 
-MP -MF .deps/gmapl-maxent_hr.Tpo -c -o gmapl-maxent_hr.o `test -f 
'maxent_hr.c' || echo './'`maxent_hr.c
mv -f .deps/gmapl-maxent_hr.Tpo .deps/gmapl-maxent_hr.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-pair.o -MD -MP 
-MF .deps/gmapl-pair.Tpo -c -o gmapl-pair.o `test -f 'pair.c' || echo 
'./'`pair.c
mv -f .deps/gmapl-pair.Tpo .deps/gmapl-pair.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-pairpool.o -MD 
-MP -MF .deps/gmapl-pairpool.Tpo -c -o gmapl-pairpool.o `test -f 'pairpool.c' 
|| echo './'`pairpool.c
mv -f .deps/gmapl-pairpool.Tpo .deps/gmapl-pairpool.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-cellpool.o -MD 
-MP -MF .deps/gmapl-cellpool.Tpo -c -o gmapl-cellpool.o `test -f 'cellpool.c' 
|| echo './'`cellpool.c
mv -f .deps/gmapl-cellpool.Tpo .deps/gmapl-cellpool.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-stage2.o -MD 
-MP -MF .deps/gmapl-stage2.Tpo -c -o gmapl-stage2.o `test -f 'stage2.c' || echo 
'./'`stage2.c
mv -f .deps/gmapl-stage2.Tpo .deps/gmapl-stage2.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-doublelist.o 
-MD -MP -MF .deps/gmapl-doublelist.Tpo -c -o gmapl-doublelist.o `test -f 
'doublelist.c' || echo './'`doublelist.c
mv -f .deps/gmapl-doublelist.Tpo .deps/gmapl-doublelist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-smooth.o -MD 
-MP -MF .deps/gmapl-smooth.Tpo -c -o gmapl-smooth.o `test -f 'smooth.c' || echo 
'./'`smooth.c
mv -f .deps/gmapl-smooth.Tpo .deps/gmapl-smooth.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapl-splicestringpool.o -MD -MP -MF .deps/gmapl-splicestringpool.Tpo -c -o 
gmapl-splicestringpool.o `test -f 'splicestringpool.c' || echo 
'./'`splicestringpool.c
mv -f .deps/gmapl-splicestringpool.Tpo .deps/gmapl-splicestringpool.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapl-splicetrie_build.o -MD -MP -MF .deps/gmapl-splicetrie_build.Tpo -c -o 
gmapl-splicetrie_build.o `test -f 'splicetrie_build.c' || echo 
'./'`splicetrie_build.c
mv -f .deps/gmapl-splicetrie_build.Tpo .deps/gmapl-splicetrie_build.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-splicetrie.o 
-MD -MP -MF .deps/gmapl-splicetrie.Tpo -c -o gmapl-splicetrie.o `test -f 
'splicetrie.c' || echo './'`splicetrie.c
mv -f .deps/gmapl-splicetrie.Tpo .deps/gmapl-splicetrie.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-boyer-moore.o 
-MD -MP -MF .deps/gmapl-boyer-moore.Tpo -c -o gmapl-boyer-moore.o `test -f 
'boyer-moore.c' || echo './'`boyer-moore.c
mv -f .deps/gmapl-boyer-moore.Tpo .deps/gmapl-boyer-moore.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-dynprog.o -MD 
-MP -MF .deps/gmapl-dynprog.Tpo -c -o gmapl-dynprog.o `test -f 'dynprog.c' || 
echo './'`dynprog.c
mv -f .deps/gmapl-dynprog.Tpo .deps/gmapl-dynprog.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-dynprog_simd.o 
-MD -MP -MF .deps/gmapl-dynprog_simd.Tpo -c -o gmapl-dynprog_simd.o `test -f 
'dynprog_simd.c' || echo './'`dynprog_simd.c
mv -f .deps/gmapl-dynprog_simd.Tpo .deps/gmapl-dynprog_simd.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapl-dynprog_single.o -MD -MP -MF .deps/gmapl-dynprog_single.Tpo -c -o 
gmapl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c
mv -f .deps/gmapl-dynprog_single.Tpo .deps/gmapl-dynprog_single.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapl-dynprog_genome.o -MD -MP -MF .deps/gmapl-dynprog_genome.Tpo -c -o 
gmapl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c
mv -f .deps/gmapl-dynprog_genome.Tpo .deps/gmapl-dynprog_genome.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-dynprog_cdna.o 
-MD -MP -MF .deps/gmapl-dynprog_cdna.Tpo -c -o gmapl-dynprog_cdna.o `test -f 
'dynprog_cdna.c' || echo './'`dynprog_cdna.c
mv -f .deps/gmapl-dynprog_cdna.Tpo .deps/gmapl-dynprog_cdna.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-dynprog_end.o 
-MD -MP -MF .deps/gmapl-dynprog_end.Tpo -c -o gmapl-dynprog_end.o `test -f 
'dynprog_end.c' || echo './'`dynprog_end.c
mv -f .deps/gmapl-dynprog_end.Tpo .deps/gmapl-dynprog_end.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-translation.o 
-MD -MP -MF .deps/gmapl-translation.Tpo -c -o gmapl-translation.o `test -f 
'translation.c' || echo './'`translation.c
mv -f .deps/gmapl-translation.Tpo .deps/gmapl-translation.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-pbinom.o -MD 
-MP -MF .deps/gmapl-pbinom.Tpo -c -o gmapl-pbinom.o `test -f 'pbinom.c' || echo 
'./'`pbinom.c
mv -f .deps/gmapl-pbinom.Tpo .deps/gmapl-pbinom.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-changepoint.o 
-MD -MP -MF .deps/gmapl-changepoint.Tpo -c -o gmapl-changepoint.o `test -f 
'changepoint.c' || echo './'`changepoint.c
mv -f .deps/gmapl-changepoint.Tpo .deps/gmapl-changepoint.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-stage3.o -MD 
-MP -MF .deps/gmapl-stage3.Tpo -c -o gmapl-stage3.o `test -f 'stage3.c' || echo 
'./'`stage3.c
mv -f .deps/gmapl-stage3.Tpo .deps/gmapl-stage3.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-request.o -MD 
-MP -MF .deps/gmapl-request.Tpo -c -o gmapl-request.o `test -f 'request.c' || 
echo './'`request.c
mv -f .deps/gmapl-request.Tpo .deps/gmapl-request.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-result.o -MD 
-MP -MF .deps/gmapl-result.Tpo -c -o gmapl-result.o `test -f 'result.c' || echo 
'./'`result.c
mv -f .deps/gmapl-result.Tpo .deps/gmapl-result.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-output.o -MD 
-MP -MF .deps/gmapl-output.Tpo -c -o gmapl-output.o `test -f 'output.c' || echo 
'./'`output.c
mv -f .deps/gmapl-output.Tpo .deps/gmapl-output.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-inbuffer.o -MD 
-MP -MF .deps/gmapl-inbuffer.Tpo -c -o gmapl-inbuffer.o `test -f 'inbuffer.c' 
|| echo './'`inbuffer.c
mv -f .deps/gmapl-inbuffer.Tpo .deps/gmapl-inbuffer.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-samheader.o -MD 
-MP -MF .deps/gmapl-samheader.Tpo -c -o gmapl-samheader.o `test -f 
'samheader.c' || echo './'`samheader.c
mv -f .deps/gmapl-samheader.Tpo .deps/gmapl-samheader.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-outbuffer.o -MD 
-MP -MF .deps/gmapl-outbuffer.Tpo -c -o gmapl-outbuffer.o `test -f 
'outbuffer.c' || echo './'`outbuffer.c
mv -f .deps/gmapl-outbuffer.Tpo .deps/gmapl-outbuffer.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-chimera.o -MD 
-MP -MF .deps/gmapl-chimera.Tpo -c -o gmapl-chimera.o `test -f 'chimera.c' || 
echo './'`chimera.c
mv -f .deps/gmapl-chimera.Tpo .deps/gmapl-chimera.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-datadir.o -MD 
-MP -MF .deps/gmapl-datadir.Tpo -c -o gmapl-datadir.o `test -f 'datadir.c' || 
echo './'`datadir.c
mv -f .deps/gmapl-datadir.Tpo .deps/gmapl-datadir.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-getopt.o -MD 
-MP -MF .deps/gmapl-getopt.Tpo -c -o gmapl-getopt.o `test -f 'getopt.c' || echo 
'./'`getopt.c
mv -f .deps/gmapl-getopt.Tpo .deps/gmapl-getopt.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-getopt1.o -MD 
-MP -MF .deps/gmapl-getopt1.Tpo -c -o gmapl-getopt1.o `test -f 'getopt1.c' || 
echo './'`getopt1.c
mv -f .deps/gmapl-getopt1.Tpo .deps/gmapl-getopt1.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapl-gmap.o -MD -MP 
-MF .deps/gmapl-gmap.Tpo -c -o gmapl-gmap.o `test -f 'gmap.c' || echo 
'./'`gmap.c
mv -f .deps/gmapl-gmap.Tpo .deps/gmapl-gmap.Po
/bin/sh ../libtool --tag=CC   --mode=link /nxb-bin/usr/bin/cc  -D_THREAD_SAFE 
-pthread   -DTARGET=\"mips64-portbld-freebsd11.0\" 
-DGMAPDB=\"/usr/local/share\" -DLARGE_GENOMES=1 -O2 -pipe -G0  
-fno-strict-aliasing    -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o 
gmapl-intlist.o gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o 
gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o 
gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o 
gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o 
gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o 
gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o 
gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o 
gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o 
gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o 
gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o 
gmapl-diagpool.o
  gmapl-cmet.o gmapl-atoi.o gmapl-orderstat.o gmapl-oligoindex_hr.o 
gmapl-intron.o gmapl-maxent.o gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o 
gmapl-cellpool.o gmapl-stage2.o gmapl-doublelist.o gmapl-smooth.o 
gmapl-splicestringpool.o gmapl-splicetrie_build.o gmapl-splicetrie.o 
gmapl-boyer-moore.o gmapl-dynprog.o gmapl-dynprog_simd.o gmapl-dynprog_single.o 
gmapl-dynprog_genome.o gmapl-dynprog_cdna.o gmapl-dynprog_end.o 
gmapl-translation.o gmapl-pbinom.o gmapl-changepoint.o gmapl-stage3.o 
gmapl-request.o gmapl-result.o gmapl-output.o gmapl-inbuffer.o 
gmapl-samheader.o gmapl-outbuffer.o gmapl-chimera.o gmapl-datadir.o 
gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o  -lz -lbz2 -lm 
libtool: link: /nxb-bin/usr/bin/cc -D_THREAD_SAFE -pthread 
-DTARGET=\"mips64-portbld-freebsd11.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -fno-strict-aliasing -o gmapl gmapl-except.o 
gmapl-assert.o gmapl-mem.o gmapl-intlist.o gmapl-list.o gmapl-littleendian.o 
gmapl-bigendian.o gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o 
gmapl-stopwatch.o gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o 
gmapl-iit-read.o gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o 
gmapl-genomicpos.o gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o 
gmapl-genome.o gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o 
gmapl-genome-write.o gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o 
gmapl-indexdb.o gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o 
gmapl-segmentpos.o gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o 
gmapl-match.o gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o 
gmapl-diagpool.o gmapl-cmet.o gmapl-atoi.o gmapl-o
 rderstat.o gmapl-oligoindex_hr.o gmapl-intron.o gmapl-maxent.o 
gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o gmapl-cellpool.o gmapl-stage2.o 
gmapl-doublelist.o gmapl-smooth.o gmapl-splicestringpool.o 
gmapl-splicetrie_build.o gmapl-splicetrie.o gmapl-boyer-moore.o gmapl-dynprog.o 
gmapl-dynprog_simd.o gmapl-dynprog_single.o gmapl-dynprog_genome.o 
gmapl-dynprog_cdna.o gmapl-dynprog_end.o gmapl-translation.o gmapl-pbinom.o 
gmapl-changepoint.o gmapl-stage3.o gmapl-request.o gmapl-result.o 
gmapl-output.o gmapl-inbuffer.o gmapl-samheader.o gmapl-outbuffer.o 
gmapl-chimera.o gmapl-datadir.o gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o  
-lz -lbz2 -lm -pthread
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-except.o -MD -MP -MF .deps/get_genome-except.Tpo -c -o 
get_genome-except.o `test -f 'except.c' || echo './'`except.c
mv -f .deps/get_genome-except.Tpo .deps/get_genome-except.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-assert.o -MD -MP -MF .deps/get_genome-assert.Tpo -c -o 
get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c
mv -f .deps/get_genome-assert.Tpo .deps/get_genome-assert.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-mem.o -MD -MP -MF .deps/get_genome-mem.Tpo -c -o 
get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c
mv -f .deps/get_genome-mem.Tpo .deps/get_genome-mem.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-intlist.o -MD -MP -MF .deps/get_genome-intlist.Tpo -c -o 
get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
mv -f .deps/get_genome-intlist.Tpo .deps/get_genome-intlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-list.o -MD -MP -MF .deps/get_genome-list.Tpo -c -o 
get_genome-list.o `test -f 'list.c' || echo './'`list.c
mv -f .deps/get_genome-list.Tpo .deps/get_genome-list.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-littleendian.o -MD -MP -MF .deps/get_genome-littleendian.Tpo -c 
-o get_genome-littleendian.o `test -f 'littleendian.c' || echo 
'./'`littleendian.c
mv -f .deps/get_genome-littleendian.Tpo .deps/get_genome-littleendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-bigendian.o -MD -MP -MF .deps/get_genome-bigendian.Tpo -c -o 
get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
mv -f .deps/get_genome-bigendian.Tpo .deps/get_genome-bigendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-univinterval.o -MD -MP -MF .deps/get_genome-univinterval.Tpo -c 
-o get_genome-univinterval.o `test -f 'univinterval.c' || echo 
'./'`univinterval.c
mv -f .deps/get_genome-univinterval.Tpo .deps/get_genome-univinterval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-interval.o -MD -MP -MF .deps/get_genome-interval.Tpo -c -o 
get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c
mv -f .deps/get_genome-interval.Tpo .deps/get_genome-interval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-uintlist.o -MD -MP -MF .deps/get_genome-uintlist.Tpo -c -o 
get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
mv -f .deps/get_genome-uintlist.Tpo .deps/get_genome-uintlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-stopwatch.o -MD -MP -MF .deps/get_genome-stopwatch.Tpo -c -o 
get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
mv -f .deps/get_genome-stopwatch.Tpo .deps/get_genome-stopwatch.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-access.o -MD -MP -MF .deps/get_genome-access.Tpo -c -o 
get_genome-access.o `test -f 'access.c' || echo './'`access.c
mv -f .deps/get_genome-access.Tpo .deps/get_genome-access.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-filestring.o -MD -MP -MF .deps/get_genome-filestring.Tpo -c -o 
get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
mv -f .deps/get_genome-filestring.Tpo .deps/get_genome-filestring.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-iit-read-univ.o -MD -MP -MF .deps/get_genome-iit-read-univ.Tpo 
-c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo 
'./'`iit-read-univ.c
mv -f .deps/get_genome-iit-read-univ.Tpo .deps/get_genome-iit-read-univ.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-iit-read.o -MD -MP -MF .deps/get_genome-iit-read.Tpo -c -o 
get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
mv -f .deps/get_genome-iit-read.Tpo .deps/get_genome-iit-read.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-md5.o -MD -MP -MF .deps/get_genome-md5.Tpo -c -o 
get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c
mv -f .deps/get_genome-md5.Tpo .deps/get_genome-md5.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-bzip2.o -MD -MP -MF .deps/get_genome-bzip2.Tpo -c -o 
get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c
mv -f .deps/get_genome-bzip2.Tpo .deps/get_genome-bzip2.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-sequence.o -MD -MP -MF .deps/get_genome-sequence.Tpo -c -o 
get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
mv -f .deps/get_genome-sequence.Tpo .deps/get_genome-sequence.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-genome.o -MD -MP -MF .deps/get_genome-genome.Tpo -c -o 
get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c
mv -f .deps/get_genome-genome.Tpo .deps/get_genome-genome.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-genomicpos.o -MD -MP -MF .deps/get_genome-genomicpos.Tpo -c -o 
get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
mv -f .deps/get_genome-genomicpos.Tpo .deps/get_genome-genomicpos.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-chrom.o -MD -MP -MF .deps/get_genome-chrom.Tpo -c -o 
get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c
mv -f .deps/get_genome-chrom.Tpo .deps/get_genome-chrom.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-chrnum.o -MD -MP -MF .deps/get_genome-chrnum.Tpo -c -o 
get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c
mv -f .deps/get_genome-chrnum.Tpo .deps/get_genome-chrnum.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-datadir.o -MD -MP -MF .deps/get_genome-datadir.Tpo -c -o 
get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c
mv -f .deps/get_genome-datadir.Tpo .deps/get_genome-datadir.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-parserange.o -MD -MP -MF .deps/get_genome-parserange.Tpo -c -o 
get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c
mv -f .deps/get_genome-parserange.Tpo .deps/get_genome-parserange.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-getopt.o -MD -MP -MF .deps/get_genome-getopt.Tpo -c -o 
get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c
mv -f .deps/get_genome-getopt.Tpo .deps/get_genome-getopt.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-getopt1.o -MD -MP -MF .deps/get_genome-getopt1.Tpo -c -o 
get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c
mv -f .deps/get_genome-getopt1.Tpo .deps/get_genome-getopt1.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing 
-MT get_genome-get-genome.o -MD -MP -MF .deps/get_genome-get-genome.Tpo -c -o 
get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c
mv -f .deps/get_genome-get-genome.Tpo .deps/get_genome-get-genome.Po
/bin/sh ../libtool --tag=CC   --mode=link /nxb-bin/usr/bin/cc  -D_THREAD_SAFE 
-pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0  
-fno-strict-aliasing    -o get-genome get_genome-except.o get_genome-assert.o 
get_genome-mem.o get_genome-intlist.o get_genome-list.o 
get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o 
get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o 
get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o 
get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-sequence.o 
get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o 
get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o 
get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o  -lz -lbz2 -lm 
libtool: link: /nxb-bin/usr/bin/cc -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -fno-strict-aliasing 
-o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o 
get_genome-intlist.o get_genome-list.o get_genome-littleendian.o 
get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o 
get_genome-uintlist.o get_genome-stopwatch.o get_genome-access.o 
get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o 
get_genome-md5.o get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o 
get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o 
get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o 
get_genome-getopt1.o get_genome-get-genome.o  -lz -lbz2 -lm -pthread
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-except.o -MD -MP 
-MF .deps/gmapindex-except.Tpo -c -o gmapindex-except.o `test -f 'except.c' || 
echo './'`except.c
mv -f .deps/gmapindex-except.Tpo .deps/gmapindex-except.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-assert.o -MD -MP 
-MF .deps/gmapindex-assert.Tpo -c -o gmapindex-assert.o `test -f 'assert.c' || 
echo './'`assert.c
mv -f .deps/gmapindex-assert.Tpo .deps/gmapindex-assert.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-mem.o -MD -MP 
-MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o `test -f 'mem.c' || echo 
'./'`mem.c
mv -f .deps/gmapindex-mem.Tpo .deps/gmapindex-mem.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-intlist.o -MD 
-MP -MF .deps/gmapindex-intlist.Tpo -c -o gmapindex-intlist.o `test -f 
'intlist.c' || echo './'`intlist.c
mv -f .deps/gmapindex-intlist.Tpo .deps/gmapindex-intlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-list.o -MD -MP 
-MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o `test -f 'list.c' || echo 
'./'`list.c
mv -f .deps/gmapindex-list.Tpo .deps/gmapindex-list.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-littleendian.o 
-MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o gmapindex-littleendian.o 
`test -f 'littleendian.c' || echo './'`littleendian.c
mv -f .deps/gmapindex-littleendian.Tpo .deps/gmapindex-littleendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-bigendian.o -MD 
-MP -MF .deps/gmapindex-bigendian.Tpo -c -o gmapindex-bigendian.o `test -f 
'bigendian.c' || echo './'`bigendian.c
mv -f .deps/gmapindex-bigendian.Tpo .deps/gmapindex-bigendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-univinterval.o 
-MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o gmapindex-univinterval.o 
`test -f 'univinterval.c' || echo './'`univinterval.c
mv -f .deps/gmapindex-univinterval.Tpo .deps/gmapindex-univinterval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-interval.o -MD 
-MP -MF .deps/gmapindex-interval.Tpo -c -o gmapindex-interval.o `test -f 
'interval.c' || echo './'`interval.c
mv -f .deps/gmapindex-interval.Tpo .deps/gmapindex-interval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-uintlist.o -MD 
-MP -MF .deps/gmapindex-uintlist.Tpo -c -o gmapindex-uintlist.o `test -f 
'uintlist.c' || echo './'`uintlist.c
mv -f .deps/gmapindex-uintlist.Tpo .deps/gmapindex-uintlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-stopwatch.o -MD 
-MP -MF .deps/gmapindex-stopwatch.Tpo -c -o gmapindex-stopwatch.o `test -f 
'stopwatch.c' || echo './'`stopwatch.c
mv -f .deps/gmapindex-stopwatch.Tpo .deps/gmapindex-stopwatch.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-access.o -MD -MP 
-MF .deps/gmapindex-access.Tpo -c -o gmapindex-access.o `test -f 'access.c' || 
echo './'`access.c
mv -f .deps/gmapindex-access.Tpo .deps/gmapindex-access.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-filestring.o -MD 
-MP -MF .deps/gmapindex-filestring.Tpo -c -o gmapindex-filestring.o `test -f 
'filestring.c' || echo './'`filestring.c
mv -f .deps/gmapindex-filestring.Tpo .deps/gmapindex-filestring.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-iit-read-univ.o 
-MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o gmapindex-iit-read-univ.o 
`test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c
mv -f .deps/gmapindex-iit-read-univ.Tpo .deps/gmapindex-iit-read-univ.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-iit-write-univ.o 
-MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o gmapindex-iit-write-univ.o 
`test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c
mv -f .deps/gmapindex-iit-write-univ.Tpo .deps/gmapindex-iit-write-univ.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-iit-read.o -MD 
-MP -MF .deps/gmapindex-iit-read.Tpo -c -o gmapindex-iit-read.o `test -f 
'iit-read.c' || echo './'`iit-read.c
mv -f .deps/gmapindex-iit-read.Tpo .deps/gmapindex-iit-read.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-md5.o -MD -MP 
-MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o `test -f 'md5.c' || echo 
'./'`md5.c
mv -f .deps/gmapindex-md5.Tpo .deps/gmapindex-md5.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-bzip2.o -MD -MP 
-MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || 
echo './'`bzip2.c
mv -f .deps/gmapindex-bzip2.Tpo .deps/gmapindex-bzip2.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-sequence.o -MD 
-MP -MF .deps/gmapindex-sequence.Tpo -c -o gmapindex-sequence.o `test -f 
'sequence.c' || echo './'`sequence.c
mv -f .deps/gmapindex-sequence.Tpo .deps/gmapindex-sequence.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-genome.o -MD -MP 
-MF .deps/gmapindex-genome.Tpo -c -o gmapindex-genome.o `test -f 'genome.c' || 
echo './'`genome.c
mv -f .deps/gmapindex-genome.Tpo .deps/gmapindex-genome.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-genomicpos.o -MD 
-MP -MF .deps/gmapindex-genomicpos.Tpo -c -o gmapindex-genomicpos.o `test -f 
'genomicpos.c' || echo './'`genomicpos.c
mv -f .deps/gmapindex-genomicpos.Tpo .deps/gmapindex-genomicpos.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-compress-write.o 
-MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o gmapindex-compress-write.o 
`test -f 'compress-write.c' || echo './'`compress-write.c
mv -f .deps/gmapindex-compress-write.Tpo .deps/gmapindex-compress-write.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-genome-write.o 
-MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o gmapindex-genome-write.o 
`test -f 'genome-write.c' || echo './'`genome-write.c
mv -f .deps/gmapindex-genome-write.Tpo .deps/gmapindex-genome-write.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-compress.o -MD 
-MP -MF .deps/gmapindex-compress.Tpo -c -o gmapindex-compress.o `test -f 
'compress.c' || echo './'`compress.c
mv -f .deps/gmapindex-compress.Tpo .deps/gmapindex-compress.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-popcount.o -MD 
-MP -MF .deps/gmapindex-popcount.Tpo -c -o gmapindex-popcount.o `test -f 
'popcount.c' || echo './'`popcount.c
mv -f .deps/gmapindex-popcount.Tpo .deps/gmapindex-popcount.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-genome128_hr.o 
-MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o gmapindex-genome128_hr.o 
`test -f 'genome128_hr.c' || echo './'`genome128_hr.c
mv -f .deps/gmapindex-genome128_hr.Tpo .deps/gmapindex-genome128_hr.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT gmapindex-bitpack64-read.o 
-MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o gmapindex-bitpack64-read.o 
`test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c
mv -f .deps/gmapindex-bitpack64-read.Tpo .deps/gmapindex-bitpack64-read.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo 
-c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo 
'./'`bitpack64-readtwo.c
mv -f .deps/gmapindex-bitpack64-readtwo.Tpo .deps/gmapindex-bitpack64-readtwo.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo 
-c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo 
'./'`bitpack64-access.c
mv -f .deps/gmapindex-bitpack64-access.Tpo .deps/gmapindex-bitpack64-access.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0  -fno-strict-aliasing -MT 
gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c 
-o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo 
'./'`bitpack64-write.c
{standard input}: Assembler messages:
{standard input}:2504: Error: unrecognized opcode `bsr $2,$2'
{standard input}:2563: Error: unrecognized opcode `bsr $4,$2'
{standard input}:2690: Error: unrecognized opcode `bsr $2,$2'
{standard input}:2744: Error: unrecognized opcode `bsr $3,$2'
Makefile:5132: recipe for target 'gmapindex-bitpack64-write.o' failed
gmake[3]: *** [gmapindex-bitpack64-write.o] Error 1
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src'
Makefile:1195: recipe for target 'all' failed
gmake[2]: *** [all] Error 2
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src'
Makefile:315: recipe for target 'all-recursive' failed
gmake[1]: *** [all-recursive] Error 1
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/gmap
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