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Maintainer: w...@freebsd.org Last committer: tabtho...@freebsd.org Ident: $FreeBSD: head/biology/libsbml/Makefile 330025 2013-10-10 18:08:34Z tabthorpe $ Log URL: http://beefy1.isc.freebsd.org/bulk/10i386-default/2013-10-17_04h52m04s/logs/libsbml-4.2.0.log Build URL: http://beefy1.isc.freebsd.org/bulk/10i386-default/2013-10-17_04h52m04s Log: ====>> Building biology/libsbml build started at Thu Oct 17 18:08:08 UTC 2013 port directory: /usr/ports/biology/libsbml building for: FreeBSD 10i386-default-job-02 10.0-BETA1 FreeBSD 10.0-BETA1 r256420 i386 maintained by: w...@freebsd.org Makefile ident: $FreeBSD: head/biology/libsbml/Makefile 330025 2013-10-10 18:08:34Z tabthorpe $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1000500 UNAME_v=FreeBSD 10.0-BETA1 r256420 UNAME_r=10.0-BETA1 BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/10i386-default/ref PKG_EXT=txz tpid=1611 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=libsbml-4.2.0 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=10i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for libsbml-4.2.0: PYTHON=off: Python bindings or support RUBY=off: Ruby bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" MAKE=gmake TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/libsbml DOCSDIR=/usr/local/share/doc/libsbml EXAMPLESDIR=/usr/local/share/examples/libsbml WWWDIR=/usr/local/www/libsbml ETCDIR=/usr/local/etc/libsbml --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for libsbml-4.2.0 =======================<phase: check-config >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> libsbml-4.2.0 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_8.txz Installing pkg-1.1.4_8... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of libsbml-4.2.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by libsbml-4.2.0 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by libsbml-4.2.0 for building => SHA256 Checksum OK for libsbml-4.2.0-src.zip. =========================================================================== =======================<phase: extract-depends>============================ ===> libsbml-4.2.0 depends on file: /usr/local/bin/unzip - not found ===> Verifying install for /usr/local/bin/unzip in /usr/ports/archivers/unzip ===> Installing existing package /packages/All/unzip-6.0_1.txz Installing unzip-6.0_1... done ===> Returning to build of libsbml-4.2.0 =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by libsbml-4.2.0 for building ===> Extracting for libsbml-4.2.0 => SHA256 Checksum OK for libsbml-4.2.0-src.zip. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for libsbml-4.2.0 ===> Applying FreeBSD patches for libsbml-4.2.0 /usr/bin/sed -i.bak -e 's#%%PREFIX%%#/usr/local#' /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/Makefile.in =========================================================================== =======================<phase: build-depends >============================ ===> libsbml-4.2.0 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-3.82_1.txz Installing gmake-3.82_1...Installing gettext-0.18.3.1... done done ===> Returning to build of libsbml-4.2.0 =========================================================================== =======================<phase: lib-depends >============================ ===> libsbml-4.2.0 depends on shared library: xml2.5 - not found ===> Verifying install for xml2.5 in /usr/ports/textproc/libxml2 ===> Installing existing package /packages/All/libxml2-2.8.0_2.txz Installing libxml2-2.8.0_2... done ===> Returning to build of libsbml-4.2.0 =========================================================================== =======================<phase: configure >============================ ===> Configuring for libsbml-4.2.0 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/acinclude.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/config/libtool.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/configure configure: loading site script /usr/ports/Templates/config.site checking build system type... i386-portbld-freebsd10.0 checking host system type... i386-portbld-freebsd10.0 checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether gmake sets $(MAKE)... yes checking for autoconf... autoconf checking for aclocal... aclocal checking whether -Wno-long-double is supported... yes checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ld used by cc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for /usr/bin/ld option to reload object files... -r checking for BSD-compatible nm... /usr/bin/nm -B checking whether ln -s works... yes checking how to recognize dependent libraries... pass_all checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for dlfcn.h... (cached) yes checking how to run the C++ preprocessor... c++ -E checking for g77... no checking for xlf... no checking for f77... no checking for frt... no checking for pgf77... no checking for cf77... no checking for fort77... no checking for fl32... no checking for af77... no checking for xlf90... no checking for f90... no checking for pgf90... no checking for pghpf... no checking for epcf90... no checking for gfortran... no <snip> c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -O2 -pipe -fno-strict-aliasing -MT UnitsBase.lo -MD -MP -MF .deps/UnitsBase.Po -c UnitsBase.cpp -o UnitsBase.o >/dev/null 2>&1 gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/validator/constraints' gmake -w -C test -w -- SYSTEMVERSION= OSVERSION=1000500 OSREL=10.0 OPSYS=FreeBSD ARCH=i386 .MAKE.LEVEL.ENV=MAKELEVEL all gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/validator/test' gmake[4]: Nothing to be done for `all'. gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/validator/test' gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/validator' gmake -w -C units -w -- .MAKE.LEVEL.ENV=MAKELEVEL ARCH=i386 OPSYS=FreeBSD OSREL=10.0 OSVERSION=1000500 SYSTEMVERSION= all gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/units' /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT UnitFormulaFormatter.lo -MD -MP -MF ".deps/UnitFormulaFormatter.Po" -c -o UnitFormulaFormatter.lo UnitFormulaFormatter.cpp mkdir .libs c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT UnitFormulaFormatter.lo -MD -MP -MF .deps/UnitFormulaFormatter.Po -c UnitFormulaFormatter.cpp -fPIC -DPIC -o .libs/UnitFormulaFormatter.o UnitFormulaFormatter.cpp:2054:23: warning: conversion from string literal to 'char *' is deprecated [-Wdeprecated-writable-strings] char * convFactor = ""; ^ 1 warning generated. c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT UnitFormulaFormatter.lo -MD -MP -MF .deps/UnitFormulaFormatter.Po -c UnitFormulaFormatter.cpp -o UnitFormulaFormatter.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT FormulaUnitsData.lo -MD -MP -MF ".deps/FormulaUnitsData.Po" -c -o FormulaUnitsData.lo FormulaUnitsData.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT FormulaUnitsData.lo -MD -MP -MF .deps/FormulaUnitsData.Po -c FormulaUnitsData.cpp -fPIC -DPIC -o .libs/FormulaUnitsData.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT FormulaUnitsData.lo -MD -MP -MF .deps/FormulaUnitsData.Po -c FormulaUnitsData.cpp -o FormulaUnitsData.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT UnitKindList.lo -MD -MP -MF ".deps/UnitKindList.Po" -c -o UnitKindList.lo UnitKindList.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT UnitKindList.lo -MD -MP -MF .deps/UnitKindList.Po -c UnitKindList.cpp -fPIC -DPIC -o .libs/UnitKindList.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I/usr/local/include/libxml2 -I/usr/include -O2 -pipe -fno-strict-aliasing -MT UnitKindList.lo -MD -MP -MF .deps/UnitKindList.Po -c UnitKindList.cpp -o UnitKindList.o >/dev/null 2>&1 gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/units' gmake -w -C annotation -w -- .MAKE.LEVEL.ENV=MAKELEVEL ARCH=i386 OPSYS=FreeBSD OSREL=10.0 OSVERSION=1000500 SYSTEMVERSION= all gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/annotation' /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT CVTerm.lo -MD -MP -MF ".deps/CVTerm.Po" -c -o CVTerm.lo CVTerm.cpp mkdir .libs c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT CVTerm.lo -MD -MP -MF .deps/CVTerm.Po -c CVTerm.cpp -fPIC -DPIC -o .libs/CVTerm.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT CVTerm.lo -MD -MP -MF .deps/CVTerm.Po -c CVTerm.cpp -o CVTerm.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT ModelHistory.lo -MD -MP -MF ".deps/ModelHistory.Po" -c -o ModelHistory.lo ModelHistory.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT ModelHistory.lo -MD -MP -MF .deps/ModelHistory.Po -c ModelHistory.cpp -fPIC -DPIC -o .libs/ModelHistory.o ModelHistory.cpp:225:12: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (hour < 0 || hour > 23) ~~~~ ^ ~ ModelHistory.cpp:245:14: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (minute < 0 || minute > 59) ~~~~~~ ^ ~ ModelHistory.cpp:265:14: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (second < 0 || second > 59) ~~~~~~ ^ ~ ModelHistory.cpp:285:12: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (sign < 0 || sign > 1) ~~~~ ^ ~ ModelHistory.cpp:306:12: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (hour < 0 || hour > 12) ~~~~ ^ ~ ModelHistory.cpp:326:14: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (minute < 0 || minute > 59) ~~~~~~ ^ ~ 6 warnings generated. c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT ModelHistory.lo -MD -MP -MF .deps/ModelHistory.Po -c ModelHistory.cpp -o ModelHistory.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT RDFAnnotation.lo -MD -MP -MF ".deps/RDFAnnotation.Po" -c -o RDFAnnotation.lo RDFAnnotation.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT RDFAnnotation.lo -MD -MP -MF .deps/RDFAnnotation.Po -c RDFAnnotation.cpp -fPIC -DPIC -o .libs/RDFAnnotation.o RDFAnnotation.cpp:146:11: warning: expression result unused [-Wunused-value] *(rdfAnnotation).removeChild(0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ RDFAnnotation.cpp:171:9: warning: expression result unused [-Wunused-value] *(rdfAnnotation).removeChild(0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2 warnings generated. c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -I../sbml/layout -O2 -pipe -fno-strict-aliasing -MT RDFAnnotation.lo -MD -MP -MF .deps/RDFAnnotation.Po -c RDFAnnotation.cpp -o RDFAnnotation.o >/dev/null 2>&1 gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/annotation' gmake -w -C sbml -w -- .MAKE.LEVEL.ENV=MAKELEVEL ARCH=i386 OPSYS=FreeBSD OSREL=10.0 OSVERSION=1000500 SYSTEMVERSION= all gmake[3]: Entering directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/sbml' gmake default gmake[4]: Entering directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/sbml' /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Compartment.lo -MD -MP -MF ".deps/Compartment.Po" -c -o Compartment.lo Compartment.cpp mkdir .libs c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Compartment.lo -MD -MP -MF .deps/Compartment.Po -c Compartment.cpp -fPIC -DPIC -o .libs/Compartment.o Compartment.cpp:1269:26: warning: comparison of unsigned expression < 0 is always false [-Wtautological-compare] if (mSpatialDimensions < 0 || mSpatialDimensions > 3) ~~~~~~~~~~~~~~~~~~ ^ ~ Compartment.cpp:1452:14: warning: comparison of unsigned expression >= 0 is always true [-Wtautological-compare] if (sd >= 0 && sd <= 2) ~~ ^ ~ 2 warnings generated. c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Compartment.lo -MD -MP -MF .deps/Compartment.Po -c Compartment.cpp -o Compartment.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT CompartmentType.lo -MD -MP -MF ".deps/CompartmentType.Po" -c -o CompartmentType.lo CompartmentType.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT CompartmentType.lo -MD -MP -MF .deps/CompartmentType.Po -c CompartmentType.cpp -fPIC -DPIC -o .libs/CompartmentType.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT CompartmentType.lo -MD -MP -MF .deps/CompartmentType.Po -c CompartmentType.cpp -o CompartmentType.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Constraint.lo -MD -MP -MF ".deps/Constraint.Po" -c -o Constraint.lo Constraint.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Constraint.lo -MD -MP -MF .deps/Constraint.Po -c Constraint.cpp -fPIC -DPIC -o .libs/Constraint.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Constraint.lo -MD -MP -MF .deps/Constraint.Po -c Constraint.cpp -o Constraint.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Delay.lo -MD -MP -MF ".deps/Delay.Po" -c -o Delay.lo Delay.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Delay.lo -MD -MP -MF .deps/Delay.Po -c Delay.cpp -fPIC -DPIC -o .libs/Delay.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Delay.lo -MD -MP -MF .deps/Delay.Po -c Delay.cpp -o Delay.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Event.lo -MD -MP -MF ".deps/Event.Po" -c -o Event.lo Event.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Event.lo -MD -MP -MF .deps/Event.Po -c Event.cpp -fPIC -DPIC -o .libs/Event.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Event.lo -MD -MP -MF .deps/Event.Po -c Event.cpp -o Event.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT EventAssignment.lo -MD -MP -MF ".deps/EventAssignment.Po" -c -o EventAssignment.lo EventAssignment.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT EventAssignment.lo -MD -MP -MF .deps/EventAssignment.Po -c EventAssignment.cpp -fPIC -DPIC -o .libs/EventAssignment.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT EventAssignment.lo -MD -MP -MF .deps/EventAssignment.Po -c EventAssignment.cpp -o EventAssignment.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT FunctionDefinition.lo -MD -MP -MF ".deps/FunctionDefinition.Po" -c -o FunctionDefinition.lo FunctionDefinition.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT FunctionDefinition.lo -MD -MP -MF .deps/FunctionDefinition.Po -c FunctionDefinition.cpp -fPIC -DPIC -o .libs/FunctionDefinition.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT FunctionDefinition.lo -MD -MP -MF .deps/FunctionDefinition.Po -c FunctionDefinition.cpp -o FunctionDefinition.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT InitialAssignment.lo -MD -MP -MF ".deps/InitialAssignment.Po" -c -o InitialAssignment.lo InitialAssignment.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT InitialAssignment.lo -MD -MP -MF .deps/InitialAssignment.Po -c InitialAssignment.cpp -fPIC -DPIC -o .libs/InitialAssignment.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT InitialAssignment.lo -MD -MP -MF .deps/InitialAssignment.Po -c InitialAssignment.cpp -o InitialAssignment.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT KineticLaw.lo -MD -MP -MF ".deps/KineticLaw.Po" -c -o KineticLaw.lo KineticLaw.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT KineticLaw.lo -MD -MP -MF .deps/KineticLaw.Po -c KineticLaw.cpp -fPIC -DPIC -o .libs/KineticLaw.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT KineticLaw.lo -MD -MP -MF .deps/KineticLaw.Po -c KineticLaw.cpp -o KineticLaw.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT ListOf.lo -MD -MP -MF ".deps/ListOf.Po" -c -o ListOf.lo ListOf.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT ListOf.lo -MD -MP -MF .deps/ListOf.Po -c ListOf.cpp -fPIC -DPIC -o .libs/ListOf.o ListOf.cpp:174:13: warning: 43 enumeration values not handled in switch: 'SBML_UNKNOWN', 'SBML_COMPARTMENT', 'SBML_COMPARTMENT_TYPE'... [-Wswitch] switch (type) ^ 1 warning generated. c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT ListOf.lo -MD -MP -MF .deps/ListOf.Po -c ListOf.cpp -o ListOf.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT LocalParameter.lo -MD -MP -MF ".deps/LocalParameter.Po" -c -o LocalParameter.lo LocalParameter.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT LocalParameter.lo -MD -MP -MF .deps/LocalParameter.Po -c LocalParameter.cpp -fPIC -DPIC -o .libs/LocalParameter.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT LocalParameter.lo -MD -MP -MF .deps/LocalParameter.Po -c LocalParameter.cpp -o LocalParameter.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Model.lo -MD -MP -MF ".deps/Model.Po" -c -o Model.lo Model.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Model.lo -MD -MP -MF .deps/Model.Po -c Model.cpp -fPIC -DPIC -o .libs/Model.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Model.lo -MD -MP -MF .deps/Model.Po -c Model.cpp -o Model.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Parameter.lo -MD -MP -MF ".deps/Parameter.Po" -c -o Parameter.lo Parameter.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Parameter.lo -MD -MP -MF .deps/Parameter.Po -c Parameter.cpp -fPIC -DPIC -o .libs/Parameter.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Parameter.lo -MD -MP -MF .deps/Parameter.Po -c Parameter.cpp -o Parameter.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Priority.lo -MD -MP -MF ".deps/Priority.Po" -c -o Priority.lo Priority.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Priority.lo -MD -MP -MF .deps/Priority.Po -c Priority.cpp -fPIC -DPIC -o .libs/Priority.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Priority.lo -MD -MP -MF .deps/Priority.Po -c Priority.cpp -o Priority.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Reaction.lo -MD -MP -MF ".deps/Reaction.Po" -c -o Reaction.lo Reaction.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Reaction.lo -MD -MP -MF .deps/Reaction.Po -c Reaction.cpp -fPIC -DPIC -o .libs/Reaction.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Reaction.lo -MD -MP -MF .deps/Reaction.Po -c Reaction.cpp -o Reaction.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Rule.lo -MD -MP -MF ".deps/Rule.Po" -c -o Rule.lo Rule.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Rule.lo -MD -MP -MF .deps/Rule.Po -c Rule.cpp -fPIC -DPIC -o .libs/Rule.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT Rule.lo -MD -MP -MF .deps/Rule.Po -c Rule.cpp -o Rule.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT SBMLConvert.lo -MD -MP -MF ".deps/SBMLConvert.Po" -c -o SBMLConvert.lo SBMLConvert.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT SBMLConvert.lo -MD -MP -MF .deps/SBMLConvert.Po -c SBMLConvert.cpp -fPIC -DPIC -o .libs/SBMLConvert.o c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT SBMLConvert.lo -MD -MP -MF .deps/SBMLConvert.Po -c SBMLConvert.cpp -o SBMLConvert.o >/dev/null 2>&1 /bin/sh /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/libtool --mode=compile --tag=CXX c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT SBMLDocument.lo -MD -MP -MF ".deps/SBMLDocument.Po" -c -o SBMLDocument.lo SBMLDocument.cpp c++ -I. -I/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include -DFREEBSD -DPACKAGE_VERSION=\"4.2.0\" -I/usr/local/include/libxml2 -I/usr/include -DUSE_ZLIB -DUSE_BZ2 -O2 -pipe -fno-strict-aliasing -MT SBMLDocument.lo -MD -MP -MF .deps/SBMLDocument.Po -c SBMLDocument.cpp -fPIC -DPIC -o .libs/SBMLDocument.o SBMLDocument.cpp:649:23: error: call to member function 'add' is ambiguous mErrorLog.add(CannotConvertToL1V1); ~~~~~~~~~~^~~ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:186:8: note: candidate function void add (const SBMLError& error); ^ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:195:8: note: candidate function void add (const std::list<SBMLError>& errors); ^ SBMLDocument.cpp:744:23: error: call to member function 'add' is ambiguous mErrorLog.add(CannotConvertToL1V1); ~~~~~~~~~~^~~ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:186:8: note: candidate function void add (const SBMLError& error); ^ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:195:8: note: candidate function void add (const std::list<SBMLError>& errors); ^ SBMLDocument.cpp:913:23: error: call to member function 'add' is ambiguous mErrorLog.add(CannotConvertToL1V1); ~~~~~~~~~~^~~ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:186:8: note: candidate function void add (const SBMLError& error); ^ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:195:8: note: candidate function void add (const std::list<SBMLError>& errors); ^ SBMLDocument.cpp:1028:23: error: call to member function 'add' is ambiguous mErrorLog.add(CannotConvertToL1V1); ~~~~~~~~~~^~~ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:186:8: note: candidate function void add (const SBMLError& error); ^ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:195:8: note: candidate function void add (const std::list<SBMLError>& errors); ^ SBMLDocument.cpp:1128:23: error: call to member function 'add' is ambiguous mErrorLog.add(CannotConvertToL1V1); ~~~~~~~~~~^~~ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:186:8: note: candidate function void add (const SBMLError& error); ^ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:195:8: note: candidate function void add (const std::list<SBMLError>& errors); ^ SBMLDocument.cpp:1342:23: error: call to member function 'add' is ambiguous mErrorLog.add(CannotConvertToL1V1); ~~~~~~~~~~^~~ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:186:8: note: candidate function void add (const SBMLError& error); ^ /wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/include/sbml/SBMLErrorLog.h:195:8: note: candidate function void add (const std::list<SBMLError>& errors); ^ 6 errors generated. gmake[4]: *** [SBMLDocument.lo] Error 1 gmake[4]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/sbml' gmake[3]: *** [all-this-dir] Error 2 gmake[3]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src/sbml' gmake[2]: *** [sbml-recurse] Error 2 gmake[2]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0/src' gmake[1]: *** [src-recurse] Error 2 gmake[1]: Leaving directory `/wrkdirs/usr/ports/biology/libsbml/work/libsbml-4.2.0' *** Error code 1 Stop. make: stopped in /usr/ports/biology/libsbml ===> Cleaning for libsbml-4.2.0 _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
