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Maintainer: free...@skysmurf.nl Last committer: amd...@freebsd.org Ident: $FreeBSD: head/science/gromacs/Makefile 394419 2015-08-16 21:31:41Z amdmi3 $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p407727_s295126/logs/gromacs-5.0.6.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p407727_s295126 Log: ====>> Building science/gromacs build started at Fri Feb 5 18:57:07 UTC 2016 port directory: /usr/ports/science/gromacs building for: FreeBSD head-armv6-default-job-07 11.0-CURRENT FreeBSD 11.0-CURRENT r295126 arm maintained by: free...@skysmurf.nl Makefile ident: $FreeBSD: head/science/gromacs/Makefile 394419 2015-08-16 21:31:41Z amdmi3 $ Poudriere version: 3.1.10 Host OSVERSION: 1100093 Jail OSVERSION: 1100097 !!! Jail is newer than host. (Jail: 1100097, Host: 1100093) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-CURRENT r295126 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=armv6 LINUX_OSRELEASE=2.6.32 SAVED_TERM=screen QEMU_EMULATING=1 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=gromacs-5.0.6 OSREL=11.0 _OSRELEASE=11.0-CURRENT PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.10 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100097 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for gromacs-5.0.6: ATLAS=off: Use ATLAS for BLAS and LAPACK FLOAT=on: Use single instead of double precision OPENMP=on: Parallel processing support via OpenMP SIMD=off: Use CPU-specific optimizations X11=on: X11 (graphics) support ====> MPI (Message Passing Interface) support: you can only select none or one of them MPICH2=off: Parallel processing support via MPICH2 OPENMPI=off: Parallel processing support via Open MPI ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/science/gromacs/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/gromacs/work HOME=/wrkdirs/usr/ports/science/gromacs/work TMPDIR="/tmp" NO_PIE=yes NO_DEBUG_FILES=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc48" CFLAGS="-O2 -pipe -mfloat-abi=softfp -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing" CPP="cpp48" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" LIBS="" CXX="g++48" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc48" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " OPENMP="" NO_OPENMP="@comment " SIMD="@comment " NO_SIMD="" X11="" NO_X11="@comment " MPICH2="@comment " NO_MPICH2="" OPENMPI="@comment " NO_OPENMPI="" SUFFIX_D="" SUFFIX_MPI="" CMAKE_BUILD_TYPE="release" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" PERL_VERSION=5.20.3 PERL_VER=5.20 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.20 DOCSDIR="share/doc/gromacs" EXAMPLESDIR="share/examples/gromacs" DATADIR="share/gromacs" WWWDIR="www/gromacs" ETCDIR="etc/gromacs" --End PLIST_SUB-- --SUB_LIST-- ATLAS="@comment " NO_ATLAS="" FLOAT="" NO_FLOAT="@comment " OPENMP="" NO_OPENMP="@comment " SIMD="@comment " NO_SIMD="" X11="" NO_X11="@comment " MPICH2="@comment " NO_MPICH2="" OPENMPI="@comment " NO_OPENMPI="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gromacs DOCSDIR=/usr/local/share/doc/gromacs EXAMPLESDIR=/usr/local/share/examples/gromacs WWWDIR=/usr/local/www/gromacs ETCDIR=/usr/local/etc/gromacs --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make <snip> -- Performing Test CXXFLAGS_WARN - Success -- Performing Test CXXFLAGS_WARN_EXTRA -- Performing Test CXXFLAGS_WARN_EXTRA - Success -- Performing Test CXXFLAGS_WARN_REL -- Performing Test CXXFLAGS_WARN_REL - Success -- Performing Test CXXFLAGS_EXCESS_PREC -- Performing Test CXXFLAGS_EXCESS_PREC - Success -- Performing Test CXXFLAGS_COPT -- Performing Test CXXFLAGS_COPT - Success -- Performing Test CXXFLAGS_NOINLINE -- Performing Test CXXFLAGS_NOINLINE - Success -- Looking for include file unistd.h -- Looking for include file unistd.h - found -- Looking for include file pwd.h -- Looking for include file pwd.h - found -- Looking for include file dirent.h -- Looking for include file dirent.h - found -- Looking for include file time.h -- Looking for include file time.h - found -- Looking for include file sys/time.h CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_b893a/fast" -- Looking for include file sys/time.h - not found -- Looking for include file io.h -- Looking for include file io.h - not found -- Looking for include file sched.h -- Looking for include file sched.h - found -- Looking for include file regex.h -- Looking for include file regex.h - found -- Looking for posix_memalign -- Looking for posix_memalign - found -- Looking for memalign -- Looking for memalign - not found -- Looking for _aligned_malloc -- Looking for _aligned_malloc - not found -- Looking for gettimeofday -- Looking for gettimeofday - found -- Looking for fsync -- Looking for fsync - found -- Looking for _fileno -- Looking for _fileno - not found -- Looking for fileno -- Looking for fileno - found -- Looking for _commit -- Looking for _commit - not found -- Looking for sigaction -- Looking for sigaction - found -- Looking for sysconf -- Looking for sysconf - found -- Looking for rsqrt -- Looking for rsqrt - not found -- Looking for rsqrtf -- Looking for rsqrtf - not found -- Looking for sqrtf -- Looking for sqrtf - not found -- Looking for sqrt in m -- Looking for sqrt in m - found -- Looking for clock_gettime in rt -- Looking for clock_gettime in rt - found -- Checking for sched.h GNU affinity API -- Performing Test sched_affinity_compile -- Performing Test sched_affinity_compile - Failed -- Check if the system is big endian -- Searching 16 bit integer -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of unsigned short -- Check size of unsigned short - done -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for zlibVersion in /usr/lib/libz.so -- Looking for zlibVersion in /usr/lib/libz.so - found -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.3") -- Looking for xmlTextWriterEndAttribute in /usr/local/lib/libxml2.so -- Looking for xmlTextWriterEndAttribute in /usr/local/lib/libxml2.so - found -- Looking for include file libxml/parser.h -- Looking for include file libxml/parser.h - found -- Looking for XOpenDisplay in /usr/local/lib/libX11.so;/usr/local/lib/libXext.so -- Looking for XOpenDisplay in /usr/local/lib/libX11.so;/usr/local/lib/libXext.so - found -- Looking for gethostbyname -- Looking for gethostbyname - found -- Looking for connect -- Looking for connect - found -- Looking for remove -- Looking for remove - found -- Looking for shmat -- Looking for shmat - found -- Found X11: /usr/local/lib/libX11.so -- Looking for pthread.h -- Looking for pthread.h - found -- Found Threads: TRUE -- Looking for include file pthread.h -- Looking for include file pthread.h - found -- Atomic operations found -- Performing Test PTHREAD_SETAFFINITY -- Performing Test PTHREAD_SETAFFINITY - Failed -- Boost version: 1.55.0 -- Checking for GCC x86 inline asm -- Checking for GCC x86 inline asm - not supported -- Setting build user/date/host/cpu information -- Setting build user & time - OK CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_a614d/fast" -- Checking floating point format -- Checking floating point format - IEEE754 (LE byte, LE word) -- Checking for 64-bit off_t -- Checking for 64-bit off_t - present -- Checking for fseeko/ftello -- Checking for fseeko/ftello - present -- Checking for SIGUSR1 -- Checking for SIGUSR1 - found -- Checking for pipe support -- Checking for isfinite -- Performing Test isfinite_compile_ok -- Performing Test isfinite_compile_ok - Success -- Checking for isfinite - yes -- Checking for _isfinite -- Performing Test _isfinite_compile_ok -- Performing Test _isfinite_compile_ok - Failed -- Checking for _isfinite - no -- Checking for _finite -- Performing Test _finite_compile_ok -- Performing Test _finite_compile_ok - Failed -- Checking for _finite - no -- Performing Test CXXFLAG_STD_CXX0X -- Performing Test CXXFLAG_STD_CXX0X - Success -- Performing Test GMX_CXX11_SUPPORTED -- Performing Test GMX_CXX11_SUPPORTED - Success -- Looking for C++ include regex -- Looking for C++ include regex - not found -- Checking for system XDR support -- Checking for system XDR support - present -- SIMD instructions disabled -- Performing Test _callconv___vectorcall -- Performing Test _callconv___vectorcall - Failed -- Performing Test _callconv___regcall -- Performing Test _callconv___regcall - Failed -- Performing Test _callconv_ -- Performing Test _callconv_ - Success -- Checking for module 'fftw3f' -- Found fftw3f, version 3.3.3 -- Looking for fftwf_plan_r2r_1d in /usr/local/lib/libfftw3f.so -- Looking for fftwf_plan_r2r_1d in /usr/local/lib/libfftw3f.so - found -- Looking for fftwf_have_simd_sse in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx_128 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx_128 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx2_128 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx2_128 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_sse2 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_sse2 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_avx in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_avx in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_altivec in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_altivec in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_simd_neon in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_simd_neon in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse2 in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_sse2 in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_sse in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_sse in /usr/local/lib/libfftw3f.so - not found -- Looking for fftwf_have_altivec in /usr/local/lib/libfftw3f.so -- Looking for fftwf_have_altivec in /usr/local/lib/libfftw3f.so - not found -- Using external FFT library - FFTW3 -- A library with BLAS API found. -- A library with LAPACK API found. -- Checking for dlopen -- Performing Test HAVE_DLOPEN -- Performing Test HAVE_DLOPEN - Success -- Checking for dlopen - found -- Using dynamic plugins (e.g VMD-supported file formats) -- Checking for suitable VMD version -- VMD plugins not found. Path to VMD can be set with VMDDIR. -- Using default binary suffix: "" -- Using default library suffix: "" -- Could NOT find Pandoc (missing: PANDOC_EXECUTABLE) -- Could NOT find PythonInterp (missing: PYTHON_EXECUTABLE) -- Performing Test HAS_NO_UNUSED_VARIABLE -- Performing Test HAS_NO_UNUSED_VARIABLE - Success -- Check if the system is big endian -- Searching 16 bit integer -- Using unsigned short -- Check if the system is big endian - little endian -- Looking for inttypes.h -- Looking for inttypes.h - found -- Performing Test HAS_NO_UNUSED_PARAMETER -- Performing Test HAS_NO_UNUSED_PARAMETER - Success -- Performing Test HAS_NO_DEPRECATED_REGISTER -- Performing Test HAS_NO_DEPRECATED_REGISTER - Success -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/gromacs/work/gromacs-5.0.6/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/gromacs/work/gromacs-5.0.6/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/gromacs _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
