You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4...@gmail.com
Last committer: m...@freebsd.org
Ident:          $FreeBSD: head/biology/plinkseq/Makefile 403506 2015-12-11 
08:48:56Z miwi $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p410528_s296455/logs/plinkseq-0.10.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p410528_s296455
Log:

====>> Building biology/plinkseq
build started at Sat Mar 12 02:18:31 UTC 2016
port directory: /usr/ports/biology/plinkseq
building for: FreeBSD head-armv6-default-job-17 11.0-CURRENT FreeBSD 
11.0-CURRENT r296455 arm
maintained by: bacon4...@gmail.com
Makefile ident:      $FreeBSD: head/biology/plinkseq/Makefile 403506 2015-12-11 
08:48:56Z miwi $
Poudriere version: 3.1.12
Host OSVERSION: 1100100
Jail OSVERSION: 1100101




!!! Jail is newer than host. (Jail: 1100101, Host: 1100100) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-CURRENT r296455
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=armv6
LINUX_OSRELEASE=2.6.32
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=plinkseq-0.10
OSREL=11.0
_OSRELEASE=11.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
MASTERNAME=head-armv6-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100101
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" NO_PIE=yes 
WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -mfloat-abi=softfp  
-fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" 
LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/plinkseq"
EXAMPLESDIR="share/examples/plinkseq"
DATADIR="share/plinkseq"
WWWDIR="www/plinkseq"
ETCDIR="etc/plinkseq"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/plinkseq
DOCSDIR=/usr/local/share/doc/plinkseq
EXAMPLESDIR=/usr/local/share/examples/plinkseq
WWWDIR=/usr/local/www/plinkseq
ETCDIR=/usr/local/etc/plinkseq
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
<snip>
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_generator.lo -MD -MP -MF 
.deps/java_generator.Tpo -c google/protobuf/compiler/java/java_generator.cc -o 
java_generator.o >/dev/null 2>&1
mv -f .deps/java_generator.Tpo .deps/java_generator.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo 
-c -o java_helpers.lo `test -f 'google/protobuf/compiler/java/java_helpers.cc' 
|| echo './'`google/protobuf/compiler/java/java_helpers.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF 
.deps/java_helpers.Tpo -c google/protobuf/compiler/java/java_helpers.cc  -fPIC 
-DPIC -o .libs/java_helpers.o
In file included from google/protobuf/compiler/java/java_helpers.cc:40:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_helpers.cc:40:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF 
.deps/java_helpers.Tpo -c google/protobuf/compiler/java/java_helpers.cc -o 
java_helpers.o >/dev/null 2>&1
mv -f .deps/java_helpers.Tpo .deps/java_helpers.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo 
-c -o java_message.lo `test -f 'google/protobuf/compiler/java/java_message.cc' 
|| echo './'`google/protobuf/compiler/java/java_message.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_message.lo -MD -MP -MF 
.deps/java_message.Tpo -c google/protobuf/compiler/java/java_message.cc  -fPIC 
-DPIC -o .libs/java_message.o
In file included from google/protobuf/compiler/java/java_message.cc:50:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_message.cc:50:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_message.lo -MD -MP -MF 
.deps/java_message.Tpo -c google/protobuf/compiler/java/java_message.cc -o 
java_message.o >/dev/null 2>&1
mv -f .deps/java_message.Tpo .deps/java_message.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_message_field.lo -MD -MP -MF 
.deps/java_message_field.Tpo -c -o java_message_field.lo `test -f 
'google/protobuf/compiler/java/java_message_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_message_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF 
.deps/java_message_field.Tpo -c 
google/protobuf/compiler/java/java_message_field.cc  -fPIC -DPIC -o 
.libs/java_message_field.o
In file included from google/protobuf/compiler/java/java_message_field.cc:43:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_message_field.cc:43:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF 
.deps/java_message_field.Tpo -c 
google/protobuf/compiler/java/java_message_field.cc -o java_message_field.o 
>/dev/null 2>&1
mv -f .deps/java_message_field.Tpo .deps/java_message_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_primitive_field.lo -MD -MP -MF 
.deps/java_primitive_field.Tpo -c -o java_primitive_field.lo `test -f 
'google/protobuf/compiler/java/java_primitive_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_primitive_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF 
.deps/java_primitive_field.Tpo -c 
google/protobuf/compiler/java/java_primitive_field.cc  -fPIC -DPIC -o 
.libs/java_primitive_field.o
In file included from google/protobuf/compiler/java/java_primitive_field.cc:44:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_primitive_field.cc:44:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF 
.deps/java_primitive_field.Tpo -c 
google/protobuf/compiler/java/java_primitive_field.cc -o java_primitive_field.o 
>/dev/null 2>&1
mv -f .deps/java_primitive_field.Tpo .deps/java_primitive_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo 
-c -o java_service.lo `test -f 'google/protobuf/compiler/java/java_service.cc' 
|| echo './'`google/protobuf/compiler/java/java_service.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_service.lo -MD -MP -MF 
.deps/java_service.Tpo -c google/protobuf/compiler/java/java_service.cc  -fPIC 
-DPIC -o .libs/java_service.o
In file included from google/protobuf/compiler/java/java_service.cc:40:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_service.cc:40:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_service.lo -MD -MP -MF 
.deps/java_service.Tpo -c google/protobuf/compiler/java/java_service.cc -o 
java_service.o >/dev/null 2>&1
mv -f .deps/java_service.Tpo .deps/java_service.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_string_field.lo -MD -MP -MF 
.deps/java_string_field.Tpo -c -o java_string_field.lo `test -f 
'google/protobuf/compiler/java/java_string_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_string_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF 
.deps/java_string_field.Tpo -c 
google/protobuf/compiler/java/java_string_field.cc  -fPIC -DPIC -o 
.libs/java_string_field.o
In file included from google/protobuf/compiler/java/java_string_field.cc:45:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_string_field.cc:45:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF 
.deps/java_string_field.Tpo -c 
google/protobuf/compiler/java/java_string_field.cc -o java_string_field.o 
>/dev/null 2>&1
mv -f .deps/java_string_field.Tpo .deps/java_string_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT java_doc_comment.lo -MD -MP -MF 
.deps/java_doc_comment.Tpo -c -o java_doc_comment.lo `test -f 
'google/protobuf/compiler/java/java_doc_comment.cc' || echo 
'./'`google/protobuf/compiler/java/java_doc_comment.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF 
.deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc 
 -fPIC -DPIC -o .libs/java_doc_comment.o
In file included from google/protobuf/compiler/java/java_doc_comment.cc:40:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/java/java_doc_comment.cc:40:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF 
.deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc 
-o java_doc_comment.o >/dev/null 2>&1
mv -f .deps/java_doc_comment.Tpo .deps/java_doc_comment.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -mfloat-abi=softfp 
-fno-strict-aliasing   -MT python_generator.lo -MD -MP -MF 
.deps/python_generator.Tpo -c -o python_generator.lo `test -f 
'google/protobuf/compiler/python/python_generator.cc' || echo 
'./'`google/protobuf/compiler/python/python_generator.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF 
.deps/python_generator.Tpo -c 
google/protobuf/compiler/python/python_generator.cc  -fPIC -DPIC -o 
.libs/python_generator.o
In file included from google/protobuf/compiler/python/python_generator.cc:59:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
In file included from google/protobuf/compiler/python/python_generator.cc:59:
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/common.h:382:11: note: expanded from macro 
'GOOGLE_COMPILE_ASSERT'
          msg[bool(expr) ? 1 : -1]
          ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -MT python_generator.lo -MD -MP -MF 
.deps/python_generator.Tpo -c 
google/protobuf/compiler/python/python_generator.cc -o python_generator.o 
>/dev/null 2>&1
mv -f .deps/python_generator.Tpo .deps/python_generator.Plo
/bin/sh ../libtool --tag=CXX   --mode=link /nxb-bin/usr/bin/c++ -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare  -O2 
-pipe -mfloat-abi=softfp -fno-strict-aliasing   -version-info 8:0:0 
-export-dynamic -no-undefined  -o libprotoc.la -rpath 
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib
 code_generator.lo command_line_interface.lo plugin.lo plugin.pb.lo 
subprocess.lo zip_writer.lo cpp_enum.lo cpp_enum_field.lo cpp_extension.lo 
cpp_field.lo cpp_file.lo cpp_generator.lo cpp_helpers.lo cpp_message.lo 
cpp_message_field.lo cpp_primitive_field.lo cpp_service.lo cpp_string_field.lo 
java_enum.lo java_enum_field.lo java_extension.lo java_field.lo java_file.lo 
java_generator.lo java_helpers.lo java_message.lo java_message_field.lo 
java_primitive_field.lo java_service.lo java_string_field.lo 
java_doc_comment.lo python_generator.lo -lpthread libprotobuf.la -lz 
libtool: link: /nxb-bin/usr/bin/c++  -fPIC -DPIC -shared -nostdlib 
/usr/lib/crti.o /usr/lib/crtbeginS.o  .libs/code_generator.o 
.libs/command_line_interface.o .libs/plugin.o .libs/plugin.pb.o 
.libs/subprocess.o .libs/zip_writer.o .libs/cpp_enum.o .libs/cpp_enum_field.o 
.libs/cpp_extension.o .libs/cpp_field.o .libs/cpp_file.o .libs/cpp_generator.o 
.libs/cpp_helpers.o .libs/cpp_message.o .libs/cpp_message_field.o 
.libs/cpp_primitive_field.o .libs/cpp_service.o .libs/cpp_string_field.o 
.libs/java_enum.o .libs/java_enum_field.o .libs/java_extension.o 
.libs/java_field.o .libs/java_file.o .libs/java_generator.o 
.libs/java_helpers.o .libs/java_message.o .libs/java_message_field.o 
.libs/java_primitive_field.o .libs/java_service.o .libs/java_string_field.o 
.libs/java_doc_comment.o .libs/python_generator.o   -Wl,-rpath 
-Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/src/.libs
 -Wl,-rpath 
-Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/proto
 buf/../build/lib -lpthread ./.libs/libprotobuf.so -lz -L/usr/lib -lc++ -lm -lc 
-lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o  -pthread -O2 
-mfloat-abi=softfp   -pthread -Wl,-soname -Wl,libprotoc.so.8 -o 
.libs/libprotoc.so.8.0.0
c++: warning: argument unused during compilation: '-pthread'
c++: warning: argument unused during compilation: '-pthread'
libtool: link: (cd ".libs" && rm -f "libprotoc.so.8" && ln -s 
"libprotoc.so.8.0.0" "libprotoc.so.8")
libtool: link: (cd ".libs" && rm -f "libprotoc.so" && ln -s 
"libprotoc.so.8.0.0" "libprotoc.so")
libtool: link: ar cru .libs/libprotoc.a  code_generator.o 
command_line_interface.o plugin.o plugin.pb.o subprocess.o zip_writer.o 
cpp_enum.o cpp_enum_field.o cpp_extension.o cpp_field.o cpp_file.o 
cpp_generator.o cpp_helpers.o cpp_message.o cpp_message_field.o 
cpp_primitive_field.o cpp_service.o cpp_string_field.o java_enum.o 
java_enum_field.o java_extension.o java_field.o java_file.o java_generator.o 
java_helpers.o java_message.o java_message_field.o java_primitive_field.o 
java_service.o java_string_field.o java_doc_comment.o python_generator.o
libtool: link: ranlib .libs/libprotoc.a
libtool: link: ( cd ".libs" && rm -f "libprotoc.la" && ln -s "../libprotoc.la" 
"libprotoc.la" )
/bin/sh ../libtool --tag=CXX   --mode=link /nxb-bin/usr/bin/c++ -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare  -O2 
-pipe -mfloat-abi=softfp -fno-strict-aliasing   -D_THREAD_SAFE -pthread  -o 
protoc main.o -lpthread libprotobuf.la libprotoc.la -lz 
libtool: link: /nxb-bin/usr/bin/c++ -D_THREAD_SAFE -pthread -Wall 
-Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-mfloat-abi=softfp -fno-strict-aliasing -D_THREAD_SAFE -pthread -o .libs/protoc 
main.o  -lpthread ./.libs/libprotobuf.so ./.libs/libprotoc.so -lz -pthread 
-Wl,-rpath 
-Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib
oldpwd=`pwd` && ( cd . && $oldpwd/protoc -I. --cpp_out=$oldpwd 
google/protobuf/unittest.proto google/protobuf/unittest_empty.proto 
google/protobuf/unittest_import.proto 
google/protobuf/unittest_import_public.proto 
google/protobuf/unittest_mset.proto google/protobuf/unittest_optimize_for.proto 
google/protobuf/unittest_embed_optimize_for.proto 
google/protobuf/unittest_custom_options.proto 
google/protobuf/unittest_lite.proto google/protobuf/unittest_import_lite.proto 
google/protobuf/unittest_import_public_lite.proto 
google/protobuf/unittest_lite_imports_nonlite.proto 
google/protobuf/unittest_no_generic_services.proto 
google/protobuf/compiler/cpp/cpp_test_bad_identifiers.proto )
qemu: unhandled CPU exception 0x9 - aborting
R00=ffff0fa0 R01=4213ab54 R02=4210e751 R03=fffd4d61
R04=00001027 R05=4210e9b4 R06=00001260 R07=00000000
R08=4213852c R09=00000003 R10=400234dc R11=9fffd648
R12=4209add8 R13=9fffd610 R14=4209ae0c R15=ffff0fa0
PSR=60000010 -ZC- A usr32
Makefile:3114: recipe for target 'unittest_proto_middleman' failed
gmake[6]: *** [unittest_proto_middleman] Segmentation fault (core dumped)
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src'
Makefile:568: recipe for target 'all-recursive' failed
gmake[5]: *** [all-recursive] Error 1
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0'
Makefile:477: recipe for target 'all' failed
gmake[4]: *** [all] Error 2
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0'
Makefile:5: recipe for target 'build/lib/libprotobuf.a' failed
gmake[3]: *** [build/lib/libprotobuf.a] Error 2
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext'
Makefile:170: recipe for target 'sources/ext' failed
gmake[2]: *** [sources/ext] Error 2
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
Makefile:165: recipe for target 'all' failed
gmake[1]: *** [all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/plinkseq
_______________________________________________
freebsd-pkg-fallout@freebsd.org mailing list
https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout
To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"

Reply via email to