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build.

Maintainer:     h2+fbsdpo...@fsfe.org
Last committer: m...@freebsd.org
Ident:          $FreeBSD: branches/2016Q2/biology/ugene/Makefile 412344 
2016-04-01 13:29:15Z mat $
Log URL:        
http://beefy2.nyi.freebsd.org/data/101amd64-quarterly/415467/logs/ugene-1.17.0_1.log
Build URL:      
http://beefy2.nyi.freebsd.org/build.html?mastername=101amd64-quarterly&build=415467
Log:

====>> Building biology/ugene
build started at Fri May 20 01:37:50 UTC 2016
port directory: /usr/ports/biology/ugene
building for: FreeBSD 101amd64-quarterly-job-16 10.1-RELEASE-p34 FreeBSD 
10.1-RELEASE-p34 amd64
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:      $FreeBSD: branches/2016Q2/biology/ugene/Makefile 412344 
2016-04-01 13:29:15Z mat $
Poudriere version: 3.1.12
Host OSVERSION: 1100106
Jail OSVERSION: 1001000

---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 10.1-RELEASE-p34
UNAME_r=10.1-RELEASE-p34
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=amd64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/101amd64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=ugene-1.17.0_1
OSREL=10.1
_OSRELEASE=10.1-RELEASE-p34
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/101amd64-quarterly/ref/.p/pool
HAVE_COMPAT_IA32_KERN=YES LINUX_OSRELEASE=2.6.32
MASTERNAME=101amd64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1001000
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for ugene-1.17.0_1:
     DOCS=on: Install official UGENE documentation (PDF)
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--with-qt-includes=/usr/local/include/qt4  
--with-qt-libraries=/usr/local/lib/qt4  
--with-extra-includes=/usr/local/include  --with-extra-libs=/usr/local/lib
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  
HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh QTDIR="/usr/local" QMAKE="/usr/local/bin/qmake-qt4"  
MOC="/usr/local/bin/moc-qt4" RCC="/usr/local/bin/rcc" 
UIC="/usr/local/bin/uic-qt4"  
QMAKESPEC="/usr/local/share/qt4/mkspecs/freebsd-$(ccver="$(c++ --version)"; 
case "$ccver" in *clang*) echo clang ;; *) echo g++ ;; esac)"
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ugene/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ugene/work  
HOME=/wrkdirs/usr/ports/biology/ugene/work TMPDIR="/tmp" NO_PIE=yes 
WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  
LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fstack-protector -fno-strict-aliasing  -std=c++11"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
QT_PREFIX="/usr/local"
QT_BINDIR="bin"
QT_INCDIR="include/qt4"
QT_LIBDIR="lib/qt4"
QT_ARCHDIR="lib/qt4/qt4"
QT_PLUGINDIR="lib/qt4/plugins"
QT_LIBEXECDIR="libexec/qt4"
QT_IMPORTDIR="lib/qt4/imports"
QT_QMLDIR="lib/qt4/qt4/qml"
QT_DATADIR="share/qt4"
QT_DOCDIR="share/doc/qt4"
QT_L10NDIR="share/qt4/translations"
QT_ETCDIR="etc/xdg"
QT_EXAMPLEDIR="share/examples/qt4"
QT_TESTDIR="share/qt4/tests"
QT_MKSPECDIR="share/qt4/mkspecs"
GTK2_VERSION="2.10.0"
GTK3_VERSION="3.0.0"
NOX64="@comment
"
SSE2=""
OSREL=10.1
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/ugene/manuals"
EXAMPLESDIR="share/examples/ugene"
DATADIR="share/ugene"
WWWDIR="www/ugene"
ETCDIR="etc/ugene"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/ugene
DOCSDIR=/usr/local/share/ugene/manuals
EXAMPLESDIR=/usr/local/share/examples/ugene
WWWDIR=/usr/local/www/ugene
ETCDIR=/usr/local/etc/ugene
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ugene-1.17.0_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.7.2.txz
[101amd64-quarterly-job-16] Installing pkg-1.7.2...
[101amd64-quarterly-job-16] Extracting pkg-1.7.2: .......... done
===>   ugene-1.17.0_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ugene-1.17.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.17.0_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by ugene-1.17.0_1 for building
=> SHA256 Checksum OK for ugene/ugene-1.17.0.tar.gz.
=> SHA256 Checksum mismatch for ugene/QueryDesigner_UserManual.pdf.
=> SHA256 Checksum mismatch for ugene/UniproUGENE_UserManual.pdf.
=> SHA256 Checksum mismatch for ugene/WorkflowDesigner_UserManual.pdf.
===>  Refetch for 1 more times files: ugene/QueryDesigner_UserManual.pdf 
ugene/UniproUGENE_UserManual.pdf ugene/WorkflowDesigner_UserManual.pdf 
===>  License GPLv2 accepted by the user
=> QueryDesigner_UserManual.pdf doesn't seem to exist in /portdistfiles/ugene.
=> Attempting to fetch 
http://ugene.unipro.ru/downloads/QueryDesigner_UserManual.pdf
fetch: http://ugene.unipro.ru/downloads/QueryDesigner_UserManual.pdf: size 
mismatch: expected 855679, actual 855662
=> Attempting to fetch 
http://distcache.FreeBSD.org/ports-distfiles/ugene/QueryDesigner_UserManual.pdf
fetch: 
http://distcache.FreeBSD.org/ports-distfiles/ugene/QueryDesigner_UserManual.pdf:
 size mismatch: expected 855679, actual 855662
=> Couldn't fetch it - please try to retrieve this
=> port manually into /portdistfiles/ugene and try again.
*** Error code 1

Stop.
make[1]: stopped in /usr/ports/biology/ugene
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ugene
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