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Maintainer:     c...@freebsd.org
Last committer: b...@freebsd.org
Ident:          $FreeBSD: head/math/nauty/Makefile 327746 2013-09-20 20:55:04Z 
bapt $
Log URL:        
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-10-17_23h06m42s/logs/nauty-2.4r2.log
Build URL:      
http://beefy2.isc.freebsd.org/bulk/head-amd64-default/2013-10-17_23h06m42s
Log:

====>> Building math/nauty
build started at Fri Oct 18 10:49:47 UTC 2013
port directory: /usr/ports/math/nauty
building for: FreeBSD head-amd64-default-job-19 11.0-CURRENT FreeBSD 
11.0-CURRENT r256430 amd64
maintained by: c...@freebsd.org
Makefile ident:      $FreeBSD: head/math/nauty/Makefile 327746 2013-09-20 
20:55:04Z bapt $
Poudriere version: 3.1-pre

---Begin Environment---
OSVERSION=1100000
UNAME_v=FreeBSD 11.0-CURRENT r256430
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/head-amd64-default/ref
PKG_EXT=txz
tpid=42535
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=nauty-2.4r2
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/root
MASTERNAME=head-amd64-default
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local  LOCALBASE=/usr/local 
 LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing -std=gnu89"  
CPP="cpp" CPPFLAGS=""  LDFLAGS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fno-strict-aliasing"  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-o root -g wheel -m 555"  BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444" 
 BSD_INSTALL_SCRIPT="install  -o root -g wheel -m 555"  
BSD_INSTALL_DATA="install  -o root -g wheel -m 444"  BSD_INSTALL_MAN="install  
-o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/nauty
DOCSDIR=/usr/local/share/doc/nauty
EXAMPLESDIR=/usr/local/share/examples/nauty
WWWDIR=/usr/local/www/nauty
ETCDIR=/usr/local/etc/nauty
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for nauty-2.4r2
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   nauty-2.4r2 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.1.4_8.txz
Installing pkg-1.1.4_8... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of nauty-2.4r2
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by nauty-2.4r2 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by nauty-2.4r2 for building
=> SHA256 Checksum OK for nauty24r2.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by nauty-2.4r2 for building
===>  Extracting for nauty-2.4r2
=> SHA256 Checksum OK for nauty24r2.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for nauty-2.4r2
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for nauty-2.4r2
===>   FreeBSD 10 autotools fix applied to 
/wrkdirs/usr/ports/math/nauty/work/nauty24r2/configure
configure: loading site script /usr/ports/Templates/config.site
checking build system type... amd64-portbld-freebsd11.0
checking host system type... amd64-portbld-freebsd11.0
checking for gcc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
CFLAGS=-O2 -pipe -fno-strict-aliasing -std=gnu89
MORECFLAGS=
checking for sys/wait.h that is POSIX.1 compatible... (cached) yes
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stddef.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/wait.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for errno.h... (cached) yes
checking for pid_t... (cached) yes
checking if malloc is declared in stdlib.h or malloc.h... 1
checking if ftell is declared in stdio.h... 1
checking if fdopen is declared in stdio.h... 1
checking if popen is declared in stdio.h... 1
checking if putenv is declared in stdlib.h... 1
checking if setenv is declared in stdlib.h... 1
checking if INFINITY is declared in math.h... 1
checking for int... (cached) yes
checking size of int... 4
checking for long... (cached) yes
checking size of long... 8
checking for long long... (cached) yes
checking size of long long... 8
checking for an ANSI C-conforming const... yes
checking for isatty... yes
checking for times... yes
checking for time... (cached) yes
checking for gettimeofday... (cached) yes
checking for times... (cached) yes
checking for getrusage... (cached) yes
checking for perror... yes
checking for pipe... (cached) yes
checking for wait... yes
checking for popen... yes
checking for putenv... (cached) yes
checking for setenv... (cached) yes
checking for getc_unlocked... yes
checking for flockfile... yes
checking for gsort... no
checking for sort... sort
checking if sort supports the -k switch... 1
configure: creating ./config.status
config.status: creating makefile
config.status: creating nauty.h
config.status: creating naututil.h
config.status: creating gtools.h
===========================================================================
=======================<phase: build          >============================
===>  Building for nauty-2.4r2
cc -c -O2 -pipe -fno-strict-aliasing -std=gnu89 naututil.c
naututil.c:365:53: warning: '&&' within '||' [-Wlogical-op-parentheses]
                    if (w < 0 || w >= n || !digraph && w == v)
                                        ~~ ~~~~~~~~~^~~~~~~~~
naututil.c:365:53: note: place parentheses around the '&&' expression to 
silence this warning
                    if (w < 0 || w >= n || !digraph && w == v)
                                                    ^
                                           (                 )
naututil.c:390:57: warning: '&&' within '||' [-Wlogical-op-parentheses]
                        if (w < 0 || w >= n || !digraph && w == v)
                                            ~~ ~~~~~~~~~^~~~~~~~~
naututil.c:390:57: note: place parentheses around the '&&' expression to 
silence this warning
                        if (w < 0 || w >= n || !digraph && w == v)
                                                        ^
                                               (                 )
2 warnings generated.
cc -c -O2 -pipe -fno-strict-aliasing -std=gnu89 nauty.c
nauty.c:741:39: warning: '&&' within '||' [-Wlogical-op-parentheses]
                             getcanon && comp_canon >= 0))
                             ~~~~~~~~~^~~~~~~~~~~~~~~~~~
nauty.c:741:39: note: place parentheses around the '&&' expression to silence 
this warning
                             getcanon && comp_canon >= 0))
                                      ^
                             (                          )
nauty.c:911:17: warning: add explicit braces to avoid dangling else 
[-Wdangling-else]
                else
                ^
2 warnings generated.
cc -c -O2 -pipe -fno-strict-aliasing -std=gnu89 nautil.c
cc -c -O2 -pipe -fno-strict-aliasing -std=gnu89 nautinv.c
nautinv.c:392:35: warning: '&&' within '||' [-Wlogical-op-parentheses]
                if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
                    ~~~~~~~~~~~~~~^~~~~~~~ ~~
nautinv.c:392:35: note: place parentheses around the '&&' expression to silence 
this warning
                if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
                                  ^
                    (                     )
nautinv.c:392:61: warning: '&&' within '||' [-Wlogical-op-parentheses]
                if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
                                           ~~ ~~~~~~~~~~~~~~^~~~~~~
nautinv.c:392:61: note: place parentheses around the '&&' expression to silence 
this warning
                if (invararg == 0 && !v1v2 || invararg == 1 && v1v2) continue;
                                                            ^
                                              (                    )
nautinv.c:461:49: warning: '&&' within '||' [-Wlogical-op-parentheses]
                            cellsize[j-h] == si && cellstart[j-h] > st; )
                            ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
nautinv.c:461:49: note: place parentheses around the '&&' expression to silence 
this warning
                            cellsize[j-h] == si && cellstart[j-h] > st; )
                                                ^
                            (                                         )
3 warnings generated.
cc -c -O2 -pipe -fno-strict-aliasing -std=gnu89 naugraph.c
cc -c -O2 -pipe -fno-strict-aliasing -std=gnu89 rng.c
cc -o dreadnaut -O2 -pipe -fno-strict-aliasing -std=gnu89 dreadnaut.c  
naututil.o nauty.o nautil.o nautinv.o naugraph.o rng.o 
dreadnaut.c:451:17: warning: '&&' within '||' [-Wlogical-op-parentheses]
                    if (minus && nperm == n || !minus && nperm == 0)
                        ~~~~~~^~~~~~~~~~~~~ ~~
dreadnaut.c:451:17: note: place parentheses around the '&&' expression to 
silence this warning
                    if (minus && nperm == n || !minus && nperm == 0)
                              ^
                        (                  )
dreadnaut.c:451:41: warning: '&&' within '||' [-Wlogical-op-parentheses]
                    if (minus && nperm == n || !minus && nperm == 0)
                                            ~~ ~~~~~~~^~~~~~~~~~~~~
dreadnaut.c:451:41: note: place parentheses around the '&&' expression to 
silence this warning
                    if (minus && nperm == n || !minus && nperm == 0)
                                                      ^
                                               (                   )
2 warnings generated.
cc -O2 -pipe -fno-strict-aliasing -std=gnu89  nauty.c  -o nauty
nauty.c:741:39: warning: '&&' within '||' [-Wlogical-op-parentheses]
                             getcanon && comp_canon >= 0))
                             ~~~~~~~~~^~~~~~~~~~~~~~~~~~
nauty.c:741:39: note: place parentheses around the '&&' expression to silence 
this warning
                             getcanon && comp_canon >= 0))
                                      ^
                             (                          )
nauty.c:911:17: warning: add explicit braces to avoid dangling else 
[-Wdangling-else]
                else
                ^
2 warnings generated.
/usr/lib/crt1.o: In function `_start':
/usr/local/poudriere/jails/head-amd64/usr/src/lib/csu/amd64/crt1.c:(.text+0x14b):
 undefined reference to `main'
/tmp/nauty-NFN135.o: In function `nauty':
nauty.c:(.text+0x190): undefined reference to `nautil_check'
nauty.c:(.text+0x20f): undefined reference to `alloc_error'
nauty.c:(.text+0x264): undefined reference to `alloc_error'
nauty.c:(.text+0x2b9): undefined reference to `alloc_error'
nauty.c:(.text+0x30c): undefined reference to `alloc_error'
nauty.c:(.text+0x361): undefined reference to `alloc_error'
/tmp/nauty-NFN135.o:nauty.c:(.text+0x3b6): more undefined references to 
`alloc_error' follow
/tmp/nauty-NFN135.o: In function `nauty':
nauty.c:(.text+0xab5): undefined reference to `nautil_freedyn'
/tmp/nauty-NFN135.o: In function `firstpathnode0':
nauty.c:(.text+0xbb1): undefined reference to `alloc_error'
nauty.c:(.text+0xc6b): undefined reference to `doref'
nauty.c:(.text+0xd3c): undefined reference to `maketargetcell'
nauty.c:(.text+0xf6e): undefined reference to `nextelement'
nauty.c:(.text+0xff4): undefined reference to `breakout'
nauty.c:(.text+0x10e5): undefined reference to `shortprune'
nauty.c:(.text+0x11ab): undefined reference to `nextelement'
/tmp/nauty-NFN135.o: In function `extra_autom':
nauty.c:(.text+0x14c0): undefined reference to `writeperm'
nauty.c:(.text+0x14d2): undefined reference to `orbjoin'
/tmp/nauty-NFN135.o: In function `writemarker':
nauty.c:(.text+0x1650): undefined reference to `putstring'
nauty.c:(.text+0x165f): undefined reference to `itos'
nauty.c:(.text+0x166e): undefined reference to `putstring'
nauty.c:(.text+0x167f): undefined reference to `putstring'
nauty.c:(.text+0x1692): undefined reference to `itos'
nauty.c:(.text+0x16a1): undefined reference to `putstring'
nauty.c:(.text+0x16b2): undefined reference to `putstring'
nauty.c:(.text+0x16cf): undefined reference to `putstring'
nauty.c:(.text+0x16de): undefined reference to `itos'
nauty.c:(.text+0x16ed): undefined reference to `putstring'
nauty.c:(.text+0x16fe): undefined reference to `putstring'
nauty.c:(.text+0x171c): undefined reference to `putstring'
nauty.c:(.text+0x1723): undefined reference to `labelorg'
nauty.c:(.text+0x1732): undefined reference to `itos'
nauty.c:(.text+0x1741): undefined reference to `putstring'
nauty.c:(.text+0x1752): undefined reference to `putstring'
nauty.c:(.text+0x175f): undefined reference to `itos'
nauty.c:(.text+0x176e): undefined reference to `putstring'
nauty.c:(.text+0x1788): undefined reference to `putstring'
nauty.c:(.text+0x1797): undefined reference to `itos'
nauty.c:(.text+0x17a6): undefined reference to `putstring'
nauty.c:(.text+0x17b7): undefined reference to `putstring'
/tmp/nauty-NFN135.o: In function `othernode0':
nauty.c:(.text+0x182d): undefined reference to `alloc_error'
nauty.c:(.text+0x18e8): undefined reference to `doref'
nauty.c:(.text+0x1a6d): undefined reference to `maketargetcell'
nauty.c:(.text+0x1ad6): undefined reference to `maketargetcell'
nauty.c:(.text+0x1d06): undefined reference to `fmperm'
nauty.c:(.text+0x1d4b): undefined reference to `writeperm'
nauty.c:(.text+0x1d64): undefined reference to `orbjoin'
nauty.c:(.text+0x1dfc): undefined reference to `fmperm'
nauty.c:(.text+0x1e36): undefined reference to `orbjoin'
nauty.c:(.text+0x1e83): undefined reference to `writeperm'
nauty.c:(.text+0x1fc3): undefined reference to `fmptn'
nauty.c:(.text+0x2053): undefined reference to `shortprune'
nauty.c:(.text+0x209b): undefined reference to `nextelement'
nauty.c:(.text+0x20d3): undefined reference to `breakout'
nauty.c:(.text+0x215b): undefined reference to `shortprune'
nauty.c:(.text+0x218e): undefined reference to `longprune'
nauty.c:(.text+0x2219): undefined reference to `nextelement'
cc: error: linker command failed with exit code 1 (use -v to see invocation)
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/math/nauty/work/nauty24r2
*** Error code 1

Stop.
make: stopped in /usr/ports/math/nauty
===>  Cleaning for nauty-2.4r2
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