You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     po...@freebsd.org
Last committer: sunp...@freebsd.org
Ident:          $FreeBSD: head/science/silo/Makefile 413700 2016-04-20 
20:42:39Z sunpoet $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-mips64-default/p415421_s300097/logs/silo-4.10_3.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-mips64-default&build=p415421_s300097
Log:

====>> Building science/silo
build started at Wed May 25 09:49:34 UTC 2016
port directory: /usr/ports/science/silo
building for: FreeBSD head-mips64-default-job-20 11.0-CURRENT FreeBSD 
11.0-CURRENT r300097 mips
maintained by: po...@freebsd.org
Makefile ident:      $FreeBSD: head/science/silo/Makefile 413700 2016-04-20 
20:42:39Z sunpoet $
Poudriere version: 3.1.12
Host OSVERSION: 1100102
Jail OSVERSION: 1100109




!!! Jail is newer than host. (Jail: 1100109, Host: 1100102) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips64
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 11.0-CURRENT r300097
UNAME_r=11.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=mips64
LINUX_OSRELEASE=2.6.32
SAVED_TERM=screen
QEMU_EMULATING=1
MASTERMNT=/usr/local/poudriere/data/.m/head-mips64-default/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=silo-4.10_3
OSREL=11.0
_OSRELEASE=11.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-mips64-default/ref/.p/pool
MASTERNAME=head-mips64-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.12
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100109
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for silo-4.10_3:
     FORTRAN=off: Fortran language support
     HDF5=on: HDF-5 data format support
     PYTHON=off: Python bindings or support
     QT4=off: Qt 4 toolkit support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--enable-shared --disable-static --disable-fortran 
--with-hdf5=/usr/local/include,/usr/local/lib --disable-pythonmodule 
--disable-silex --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/silo/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/silo/work  
HOME=/wrkdirs/usr/ports/science/silo/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/science/silo/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/silo/work  
HOME=/wrkdirs/usr/ports/science/silo/work TMPDIR="/tmp" NO_PIE=yes 
WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="-I/usr/local/include"  LDFLAGS=" 
-L/usr/local/lib" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
FORTRAN="@comment
"
NO_FORTRAN=""
HDF5=""
NO_HDF5="@comment
"
SUFX_HDF5="h5"
PYTHON="@comment
"
NO_PYTHON=""
QT4="@comment
"
NO_QT4=""
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/silo"
EXAMPLESDIR="share/examples/silo"
DATADIR="share/silo"
WWWDIR="www/silo"
ETCDIR="etc/silo"
--End PLIST_SUB--

--SUB_LIST--
FORTRAN="@comment
"
NO_FORTRAN=""
HDF5=""
NO_HDF5="@comment
"
PYTHON="@comment
"
NO_PYTHON=""
QT4="@comment
"
NO_QT4=""
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/silo
DOCSDIR=/usr/local/share/doc/silo
EXAMPLESDIR=/usr/local/share/examples/silo
WWWDIR=/usr/local/www/silo
ETCDIR=/usr/local/etc/silo
--End SUB_LIST--

---Begin make.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
NM=/nxb-bin/usr/bin/nm
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
<snip>
checking for readline.h... no
checking readline/readline.h usability... yes
checking readline/readline.h presence... yes
checking for readline/readline.h... yes
checking whether readline supports history... yes
checking history.h usability... no
checking history.h presence... no
checking for history.h... no
checking readline/history.h usability... yes
checking readline/history.h presence... yes
checking for readline/history.h... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating SiloWindows/Makefile
config.status: creating svn_bin/Makefile
config.status: creating config/Makefile
config.status: creating config-site/Makefile
config.status: creating docs/Makefile
config.status: creating src/Makefile
config.status: creating src/score/Makefile
config.status: creating src/pdb/Makefile
config.status: creating src/silo/Makefile
config.status: creating src/silo/silo.h
config.status: creating src/debug/Makefile
config.status: creating src/netcdf/Makefile
config.status: creating src/pdb_drv/Makefile
config.status: creating src/pdbp_drv/Makefile
config.status: creating src/hdf5_drv/Makefile
config.status: creating src/taurus/Makefile
config.status: creating src/unknown/Makefile
config.status: creating src/filters/Makefile
config.status: creating tests/Makefile
config.status: creating tools/Makefile
config.status: creating tools/browser/Makefile
config.status: creating tools/python/Makefile
config.status: creating tools/silex/Makefile
config.status: creating tools/silock/Makefile
config.status: creating tools/json/Makefile
config.status: creating tools/mapred/Makefile
config.status: creating src/libsiloh5.settings
config.status: creating config.h
config.status: executing tests/atconfig commands
config.status: executing depfiles commands
config.status: executing libtool commands


SUMMARY OF THE Silo with HDF5 CONFIGURATION
=================================

Silo Version:           4.10
Configured on:          Wed May 25 09:50:07 UTC 2016
Configured by:          root@head-mips64-default-job-20
Configure command:      ./configure '--enable-shared' '--disable-static' 
'--disable-fortran' '--with-hdf5=/usr/local/include,/usr/local/lib' 
'--disable-pythonmodule' '--disable-silex' '--prefix=/usr/local' 
'--localstatedir=/var' '--mandir=/usr/local/man' '--infodir=/usr/local/info/' 
'--build=mips64-portbld-freebsd11.0' 'build_alias=mips64-portbld-freebsd11.0' 
'CXX=/nxb-bin/usr/bin/c++' 'CXXFLAGS=-O2 -pipe -G0 -fno-strict-aliasing ' 
'LDFLAGS= -L/usr/local/lib' 'LIBS=' 'CPPFLAGS=-I/usr/local/include' 
'CC=/nxb-bin/usr/bin/cc' 'CFLAGS=-O2 -pipe -G0 -fno-strict-aliasing' 
'CPP=/nxb-bin/usr/bin/cpp'
Host system:            mips64-portbld-freebsd11.0
Build system:           mips64-portbld-freebsd11.0
Installation point:     /usr/local
Source directory:       @UsingSrcDir@
Archiver:               ar
Ranlib:                 ranlib

Configure Summary
Compiling Options:
                     C Compiler /nxb-bin/usr/bin/cc
                       CPPFLAGS -I/usr/local/include -I/usr/local/include
                         CFLAGS -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement
                        LDFLAGS -L/usr/local/lib  -L/usr/local/lib
                           LIBS -lhdf5  -lm
Languages:
                   C++ Compiler /nxb-bin/usr/bin/c++
                       CXXFLAGS -O2 -pipe -G0 -fno-strict-aliasing 
               Fortran Compiler 
                        FCFLAGS 
                         FCLIBS 
Features:
                        Browser @UsingBrowser@
                       Readline @UsingReadline@
                           HDF5 @UsingHDF5@
                          Silex @UsingSilex@
                             Qt @UsingQt@
                Qt moc Compiler 
                    Qt CXXFLAGS 
                        Qt LIBS 
                         Python @UsingPython@
                Python Compiler 
                Python CPPFLAGS 
===========================================================================
=======================<phase: build          >============================
===>  Building for silo-4.10_3
gmake[1]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd'
gmake  all-recursive
gmake[2]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd'
Making all in .
gmake[3]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd'
gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd'
Making all in src
gmake[3]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src'
/usr/local/bin/gmake  all-recursive
gmake[4]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src'
Making all in score
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/score'
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..   -I/usr/local/include -I/usr/local/include  -O2 
-pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF 
.deps/memmove.Tpo -c -o memmove.lo memmove.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT memmove.lo -MD -MP -MF .deps/memmove.Tpo -c 
memmove.c  -fPIC -DPIC -o .libs/memmove.o
mv -f .deps/memmove.Tpo .deps/memmove.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..   -I/usr/local/include -I/usr/local/include  -O2 
-pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF 
.deps/scctla.Tpo -c -o scctla.lo scctla.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT scctla.lo -MD -MP -MF .deps/scctla.Tpo -c 
scctla.c  -fPIC -DPIC -o .libs/scctla.o
mv -f .deps/scctla.Tpo .deps/scctla.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..   -I/usr/local/include -I/usr/local/include  -O2 
-pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF 
.deps/scctl.Tpo -c -o scctl.lo scctl.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT scctl.lo -MD -MP -MF .deps/scctl.Tpo -c 
scctl.c  -fPIC -DPIC -o .libs/scctl.o
mv -f .deps/scctl.Tpo .deps/scctl.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..   -I/usr/local/include -I/usr/local/include  -O2 
-pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT schash.lo -MD -MP -MF 
.deps/schash.Tpo -c -o schash.lo schash.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT schash.lo -MD -MP -MF .deps/schash.Tpo -c 
schash.c  -fPIC -DPIC -o .libs/schash.o
mv -f .deps/schash.Tpo .deps/schash.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..   -I/usr/local/include -I/usr/local/include  -O2 
-pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF 
.deps/scstr.Tpo -c -o scstr.lo scstr.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT scstr.lo -MD -MP -MF .deps/scstr.Tpo -c 
scstr.c  -fPIC -DPIC -o .libs/scstr.o
mv -f .deps/scstr.Tpo .deps/scstr.Plo
/bin/sh ../../libtool --tag=CC   --mode=link /nxb-bin/usr/bin/cc  -O2 -pipe -G0 
 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement  -L/usr/local/lib  
-L/usr/local/lib -o libsilo_score.la  memmove.lo scctla.lo scctl.lo schash.lo 
scstr.lo  -lhdf5  -lm
libtool: link: ar cru .libs/libsilo_score.a .libs/memmove.o .libs/scctla.o 
.libs/scctl.o .libs/schash.o .libs/scstr.o 
libtool: link: ranlib .libs/libsilo_score.a
libtool: link: ( cd ".libs" && rm -f "libsilo_score.la" && ln -s 
"../libsilo_score.la" "libsilo_score.la" )
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/score'
Making all in pdb
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb'
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../..  -I../../src/score 
-I../../src/silo -I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  
-fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT detect.o -MD -MP -MF 
.deps/detect.Tpo -c -o detect.o detect.c
mv -f .deps/detect.Tpo .deps/detect.Po
/nxb-bin/usr/bin/cc -O2 -pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -o 
detect detect.o
./detect >> pdform.h
/usr/local/bin/gmake  all-am
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb'
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdb.lo -MD -MP -MF .deps/pdb.Tpo -c -o pdb.lo 
pdb.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdb.lo -MD -MP -MF 
.deps/pdb.Tpo -c pdb.c  -fPIC -DPIC -o .libs/pdb.o
mv -f .deps/pdb.Tpo .deps/pdb.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdbdir.lo -MD -MP -MF .deps/pdbdir.Tpo -c -o 
pdbdir.lo pdbdir.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbdir.lo -MD -MP -MF 
.deps/pdbdir.Tpo -c pdbdir.c  -fPIC -DPIC -o .libs/pdbdir.o
mv -f .deps/pdbdir.Tpo .deps/pdbdir.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c -o 
pdbio.lo pdbio.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbio.lo -MD -MP -MF 
.deps/pdbio.Tpo -c pdbio.c  -fPIC -DPIC -o .libs/pdbio.o
mv -f .deps/pdbio.Tpo .deps/pdbio.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdbmm.lo -MD -MP -MF .deps/pdbmm.Tpo -c -o 
pdbmm.lo pdbmm.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbmm.lo -MD -MP -MF 
.deps/pdbmm.Tpo -c pdbmm.c  -fPIC -DPIC -o .libs/pdbmm.o
mv -f .deps/pdbmm.Tpo .deps/pdbmm.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdbx.lo -MD -MP -MF .deps/pdbx.Tpo -c -o 
pdbx.lo pdbx.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdbx.lo -MD -MP -MF 
.deps/pdbx.Tpo -c pdbx.c  -fPIC -DPIC -o .libs/pdbx.o
mv -f .deps/pdbx.Tpo .deps/pdbx.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdconv.lo -MD -MP -MF .deps/pdconv.Tpo -c -o 
pdconv.lo pdconv.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdconv.lo -MD -MP -MF 
.deps/pdconv.Tpo -c pdconv.c  -fPIC -DPIC -o .libs/pdconv.o
mv -f .deps/pdconv.Tpo .deps/pdconv.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdlow.lo -MD -MP -MF .deps/pdlow.Tpo -c -o 
pdlow.lo pdlow.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdlow.lo -MD -MP -MF 
.deps/pdlow.Tpo -c pdlow.c  -fPIC -DPIC -o .libs/pdlow.o
mv -f .deps/pdlow.Tpo .deps/pdlow.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdmemb.lo -MD -MP -MF .deps/pdmemb.Tpo -c -o 
pdmemb.lo pdmemb.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdmemb.lo -MD -MP -MF 
.deps/pdmemb.Tpo -c pdmemb.c  -fPIC -DPIC -o .libs/pdmemb.o
mv -f .deps/pdmemb.Tpo .deps/pdmemb.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdpath.lo -MD -MP -MF .deps/pdpath.Tpo -c -o 
pdpath.lo pdpath.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdpath.lo -MD -MP -MF 
.deps/pdpath.Tpo -c pdpath.c  -fPIC -DPIC -o .libs/pdpath.o
mv -f .deps/pdpath.Tpo .deps/pdpath.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src/score -I../../src/silo 
-I/usr/local/include -I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT pdrdwr.lo -MD -MP -MF .deps/pdrdwr.Tpo -c -o 
pdrdwr.lo pdrdwr.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. 
-I../../src/score -I../../src/silo -I/usr/local/include -I/usr/local/include 
-O2 -pipe -G0 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT pdrdwr.lo -MD -MP -MF 
.deps/pdrdwr.Tpo -c pdrdwr.c  -fPIC -DPIC -o .libs/pdrdwr.o
mv -f .deps/pdrdwr.Tpo .deps/pdrdwr.Plo
/bin/sh ../../libtool --tag=CC   --mode=link /nxb-bin/usr/bin/cc  -O2 -pipe -G0 
 -fno-strict-aliasing -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE 
-D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement  -L/usr/local/lib  
-L/usr/local/lib -o libsilo_pdb.la  pdb.lo pdbdir.lo pdbio.lo pdbmm.lo pdbx.lo 
pdconv.lo pdlow.lo pdmemb.lo pdpath.lo pdrdwr.lo  -lhdf5  -lm
libtool: link: ar cru .libs/libsilo_pdb.a .libs/pdb.o .libs/pdbdir.o 
.libs/pdbio.o .libs/pdbmm.o .libs/pdbx.o .libs/pdconv.o .libs/pdlow.o 
.libs/pdmemb.o .libs/pdpath.o .libs/pdrdwr.o 
libtool: link: ranlib .libs/libsilo_pdb.a
libtool: link: ( cd ".libs" && rm -f "libsilo_pdb.la" && ln -s 
"../libsilo_pdb.la" "libsilo_pdb.la" )
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb'
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/pdb'
Making all in silo
gmake[5]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo'
/usr/local/bin/gmake  all-am
gmake[6]: Entering directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo'
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src  -I/usr/local/include 
-I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT 
alloc.lo -MD -MP -MF .deps/alloc.Tpo -c -o alloc.lo alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT alloc.lo -MD -MP -MF .deps/alloc.Tpo -c 
alloc.c  -fPIC -DPIC -o .libs/alloc.o
mv -f .deps/alloc.Tpo .deps/alloc.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src  -I/usr/local/include 
-I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT 
extface.lo -MD -MP -MF .deps/extface.Tpo -c -o extface.lo extface.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT extface.lo -MD -MP -MF .deps/extface.Tpo -c 
extface.c  -fPIC -DPIC -o .libs/extface.o
mv -f .deps/extface.Tpo .deps/extface.Plo
/bin/sh ../../libtool --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I../..  -I../../src  -I/usr/local/include 
-I/usr/local/include  -O2 -pipe -G0  -fno-strict-aliasing -D_LARGEFILE_SOURCE 
-D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -Wdeclaration-after-statement -MT 
silo.lo -MD -MP -MF .deps/silo.Tpo -c -o silo.lo silo.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I../.. -I../../src 
-I/usr/local/include -I/usr/local/include -O2 -pipe -G0 -fno-strict-aliasing 
-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 
-Wdeclaration-after-statement -MT silo.lo -MD -MP -MF .deps/silo.Tpo -c silo.c  
-fPIC -DPIC -o .libs/silo.o
silo.c:227: error: field 's' has incomplete type
silo.c:9200:2: warning: #warning HI AND LO OFFSET NOT VALID IN PRESENCE OF 
EXPLICIT GHOST LABELS
Makefile:454: recipe for target 'silo.lo' failed
gmake[6]: *** [silo.lo] Error 1
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo'
Makefile:378: recipe for target 'all' failed
gmake[5]: *** [all] Error 2
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src/silo'
Makefile:559: recipe for target 'all-recursive' failed
gmake[4]: *** [all-recursive] Error 1
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src'
Makefile:442: recipe for target 'all' failed
gmake[3]: *** [all] Error 2
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd/src'
Makefile:437: recipe for target 'all-recursive' failed
gmake[2]: *** [all-recursive] Error 1
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd'
Makefile:366: recipe for target 'all' failed
gmake[1]: *** [all] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/silo/work/silo-4.10-bsd'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/silo
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