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Maintainer: b...@freebsd.org Last committer: m...@freebsd.org Ident: $FreeBSD: head/math/R-cran-SuppDists/Makefile 386312 2015-05-14 10:15:04Z mat $ Log URL: http://beefy6.nyi.freebsd.org/data/101amd64-default/415869/logs/R-cran-SuppDists-1.1.9.1_2.log Build URL: http://beefy6.nyi.freebsd.org/build.html?mastername=101amd64-default&build=415869 Log: ====>> Building math/R-cran-SuppDists build started at Thu May 26 02:37:27 UTC 2016 port directory: /usr/ports/math/R-cran-SuppDists building for: FreeBSD 101amd64-default-job-19 10.1-RELEASE-p34 FreeBSD 10.1-RELEASE-p34 amd64 maintained by: b...@freebsd.org Makefile ident: $FreeBSD: head/math/R-cran-SuppDists/Makefile 386312 2015-05-14 10:15:04Z mat $ Poudriere version: 3.1.12 Host OSVERSION: 1100109 Jail OSVERSION: 1001000 ---Begin Environment--- SHELL=/bin/csh UNAME_v=FreeBSD 10.1-RELEASE-p34 UNAME_r=10.1-RELEASE-p34 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=amd64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/101amd64-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-SuppDists-1.1.9.1_2 OSREL=10.1 _OSRELEASE=10.1-RELEASE-p34 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/101amd64-default/ref/.p/pool HAVE_COMPAT_IA32_KERN=YES LINUX_OSRELEASE=2.6.32 MASTERNAME=101amd64-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1001000 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work HOME=/wrkdirs/usr/ports/math/R-cran-SuppDists/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/SuppDists OSREL=10.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/SuppDists" EXAMPLESDIR="share/examples/SuppDists" DATADIR="share/SuppDists" WWWDIR="www/SuppDists" ETCDIR="etc/SuppDists" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/SuppDists DOCSDIR=/usr/local/share/doc/SuppDists EXAMPLESDIR=/usr/local/share/examples/SuppDists WWWDIR=/usr/local/www/SuppDists ETCDIR=/usr/local/etc/SuppDists --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.3.txz [101amd64-default-job-19] Installing pkg-1.8.3... [101amd64-default-job-19] Extracting pkg-1.8.3: .......... done ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-SuppDists-1.1.9.1_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-SuppDists-1.1.9.1_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-SuppDists-1.1.9.1_2 for building => SHA256 Checksum OK for SuppDists_1.1-9.1.tar.gz. => SHA256 Checksum OK for R-benchmark-25.R. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by R-cran-SuppDists-1.1.9.1_2 for building ===> Extracting for R-cran-SuppDists-1.1.9.1_2 => SHA256 Checksum OK for SuppDists_1.1-9.1.tar.gz. => SHA256 Checksum OK for R-benchmark-25.R. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-SuppDists-1.1.9.1_2 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.3.0.txz [101amd64-default-job-19] Installing R-3.3.0... [101amd64-default-job-19] `-- Installing indexinfo-0.2.4... [101amd64-default-job-19] `-- Extracting indexinfo-0.2.4: .... done [101amd64-default-job-19] `-- Installing libXt-1.1.5,1... [101amd64-default-job-19] | `-- Installing xproto-7.0.28... [101amd64-default-job-19] | `-- Extracting xproto-7.0.28: .......... done [101amd64-default-job-19] | `-- Installing libSM-1.2.2_3,1... [101amd64-default-job-19] | | `-- Installing libICE-1.0.9_1,1... [101amd64-default-job-19] | | `-- Extracting libICE-1.0.9_1,1: .......... done [101amd64-default-job-19] | `-- Extracting libSM-1.2.2_3,1: .......... done [101amd64-default-job-19] | `-- Installing libX11-1.6.3,1... [101amd64-default-job-19] | | `-- Installing kbproto-1.0.7... [101amd64-default-job-19] | | `-- Extracting kbproto-1.0.7: .......... done [101amd64-default-job-19] | | `-- Installing libXdmcp-1.1.2... 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[101amd64-default-job-19] | | `-- Extracting freetype2-2.6.3: .......... done [101amd64-default-job-19] | `-- Extracting fontconfig-2.11.1_2,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /usr/local/share/fonts/encodings/large: caching, new cache contents: 0 fonts, 0 dirs /usr/local/share/fonts/util: caching, new cache contents: 0 fonts, 0 dirs /usr/local/lib/X11/fonts: skipping, no such directory /root/.local/share/fonts: skipping, no such directory /root/.fonts: skipping, no such directory Re-scanning /usr/local/share/fonts: caching, new cache contents: 0 fonts, 2 dirs Re-scanning /usr/local/share/fonts/encodings: caching, new cache contents: 0 fonts, 1 dirs /var/db/fontconfig: cleaning cache directory /root/.cache/fontconfig: not cleaning non-existent cache directory /root/.fontconfig: not cleaning non-existent cache directory fc-cache: succeeded [101amd64-default-job-19] | `-- Installing libXft-2.3.2_1... [101amd64-default-job-19] | | `-- Installing libXrender-0.9.9... [101amd64-default-job-19] | | `-- Installing renderproto-0.11.1... [101amd64-default-job-19] | | `-- Extracting renderproto-0.11.1: .... done [101amd64-default-job-19] | | `-- Extracting libXrender-0.9.9: .......... done [101amd64-default-job-19] | `-- Extracting libXft-2.3.2_1: ......... done [101amd64-default-job-19] | `-- Installing harfbuzz-1.2.3... [101amd64-default-job-19] | | `-- Installing cairo-1.14.6,2... [101amd64-default-job-19] | | `-- Installing dri2proto-2.8... [101amd64-default-job-19] | | `-- Extracting dri2proto-2.8: .... done <snip> [101amd64-default-job-19] | | `-- Installing gobject-introspection-1.46.0... [101amd64-default-job-19] | | | `-- Installing python2-2_3... [101amd64-default-job-19] | | | `-- Extracting python2-2_3: ...... done [101amd64-default-job-19] | | `-- Extracting gobject-introspection-1.46.0: .......... done [101amd64-default-job-19] | | `-- Installing gdbm-1.12... 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Creating group 'cups' with gid '193'. ===> Creating users Creating user 'cups' with uid '193'. [101amd64-default-job-19] | `-- Extracting cups-2.1.3_2: .......... done [101amd64-default-job-19] | `-- Installing lcms2-2.7_2... [101amd64-default-job-19] | | `-- Installing jpeg-turbo-1.4.2... [101amd64-default-job-19] | | `-- Extracting jpeg-turbo-1.4.2: .......... done [101amd64-default-job-19] | | `-- Installing tiff-4.0.6_1... [101amd64-default-job-19] | | `-- Installing jbigkit-2.1_1... [101amd64-default-job-19] | | `-- Extracting jbigkit-2.1_1: .......... done [101amd64-default-job-19] | | `-- Extracting tiff-4.0.6_1: .......... done [101amd64-default-job-19] | `-- Extracting lcms2-2.7_2: .......... done [101amd64-default-job-19] | `-- Installing gsfonts-8.11_6... [101amd64-default-job-19] | `-- Extracting gsfonts-8.11_6: .......... done [101amd64-default-job-19] `-- Extracting ghostscript9-agpl-base-9.16_5: .......... done [101amd64-default-job-19] `-- Installing tk86-8.6.5... [101amd64-default-job-19] | `-- Installing tcl86-8.6.5_1... [101amd64-default-job-19] | `-- Extracting tcl86-8.6.5_1: .......... done [101amd64-default-job-19] | `-- Installing libXScrnSaver-1.2.2_3... [101amd64-default-job-19] | | `-- Installing scrnsaverproto-1.2.2... [101amd64-default-job-19] | | `-- Extracting scrnsaverproto-1.2.2: ... done [101amd64-default-job-19] | `-- Extracting libXScrnSaver-1.2.2_3: .......... done [101amd64-default-job-19] `-- Extracting tk86-8.6.5: .......... done [101amd64-default-job-19] `-- Installing libXmu-1.1.2_3,1... [101amd64-default-job-19] `-- Extracting libXmu-1.1.2_3,1: .......... done [101amd64-default-job-19] Extracting R-3.3.0: .......... done Message from python27-2.7.11_2: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from perl5-5.20.3_13: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from dejavu-2.35: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from gcc-4.8.5_2: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc48 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from ca_root_nss-3.22.2: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from trousers-0.3.13: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupadd _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-SuppDists-1.1.9.1_2 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-SuppDists-1.1.9.1_2 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-SuppDists-1.1.9.1_2 depends on file: /usr/local/bin/R - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-SuppDists-1.1.9.1_2 ===> Generating temporary packing list * installing *source* package 'SuppDists' ... ** package 'SuppDists' successfully unpacked and MD5 sums checked ** libs g++48 -I/usr/local/lib/R/include -DNDEBUG -I/usr/local/include -DLIBICONV_PLUG -fpic -O2 -pipe -fno-builtin-coshl -fno-builtin-erfcl -fno-builtin-erfl -fno-builtin-lgammal -fno-builtin-powl -fno-builtin-sinhl -fno-builtin-tanhl -fno-builtin-tgammal -DLIBICONV_PLUG -fstack-protector -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -c dists.cc -o dists.o In file included from /usr/local/lib/gcc48/include/c++/cmath:42:0, from /usr/local/lib/R/include/R.h:43, from dists.cc:10: /usr/local/lib/gcc48/include/c++/bits/cpp_type_traits.h:213:12: error: redefinition of 'struct std::__is_integer<int>' struct __is_integer<int> ^ /usr/local/lib/gcc48/include/c++/bits/cpp_type_traits.h:146:12: error: previous definition of 'struct std::__is_integer<int>' struct __is_integer<bool> ^ *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/math/R-cran-SuppDists/work/SuppDists/src ERROR: compilation failed for package 'SuppDists' * removing '/wrkdirs/usr/ports/math/R-cran-SuppDists/work/stage/usr/local/lib/R/library/SuppDists' *** Error code 1 Stop. make: stopped in /usr/ports/math/R-cran-SuppDists _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
