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Maintainer: [email protected] Last committer: [email protected] Ident: $FreeBSD: head/math/R/Makefile 417079 2016-06-18 18:08:07Z dbn $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p417282_s302064/logs/R-3.3.0.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p417282_s302064 Log: ====>> Building math/R build started at Wed Jun 22 11:06:37 UTC 2016 port directory: /usr/ports/math/R building for: FreeBSD head-armv6-default-job-07 11.0-ALPHA4 FreeBSD 11.0-ALPHA4 r302064 arm maintained by: [email protected] Makefile ident: $FreeBSD: head/math/R/Makefile 417079 2016-06-18 18:08:07Z dbn $ Poudriere version: 3.1.12 Host OSVERSION: 1100113 Jail OSVERSION: 1100117 !!! Jail is newer than host. (Jail: 1100117, Host: 1100113) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-ALPHA4 r302064 UNAME_r=11.0-ALPHA4 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=armv6 LINUX_OSRELEASE=2.6.32 SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-3.3.0 OSREL=11.0 _OSRELEASE=11.0-ALPHA4 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100117 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for R-3.3.0: ATLAS=off: Use ATLAS instead of BLAS/LAPACK DOCS=on: Build and/or install documentation GHOSTSCRIPT=on: [dev2]bitmap() graphics devices ICU=on: Use ICU for collation in multibyte locales INFO_MANUALS=on: GNU info manuals JPEG=on: jpeg() graphics device LETTER_PAPER=off: US Letter paper LIBR=on: R shared library and a dynamically-linked R MISSING=on: use libmissing rather than libquadmath PANGOCAIRO=on: cairo and pango graphics support PCRE_PORT=on: Use devel/pcre instead of the bundled PCRE PDF_MANUALS=off: PDF manuals (requires TeX) PNG=on: png() graphics device TCLTK=on: tcltk package THREADS=on: Threading support TIFF=on: TIFF image format support X11=on: X11() graphics device ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --enable-memory-profiling rdocdir=/usr/local/share/doc/R --with-system-bzlib --with-system-zlib --with-blas="no" --with-lapack="no" --with-ICU --with-system-pcre --enable-threads=posix --with-jpeglib --enable-R-shlib --with-libpng --with-tcltk --with-tcl-config=/usr/local/lib/tcl8.6/tclConfig.sh --with-tk-config=/usr/local/lib/tk8.6/tkConfig.sh --with-libtiff --with-x --x-libraries=/usr/local/lib --x-includes=/usr/local/include --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- LIBR_LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" OBJC="gcc48" SED="/usr/local/bin/gsed" ac_cv_have_decl_powl=yes ac_cv_have_decl_log1pl=yes FCFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" R_LD_LIBRARY_PATH="/usr/local/lib/gcc48:/usr/local/lib" TAR="/usr/bin/tar" SHLIB_LDFLAGS="-fpic" SHLIB_CXXLDFLAGS="-fpic" ac_cv_have_decl_cacos=yes ac_cv_have_decl_casin=yes ac_cv_have_decl_catan=yes ac_cv_have_decl_ccos=yes ac_cv_have_decl_ccosh=yes ac_cv_have_decl_cexp=yes ac_cv_have_decl_clog=yes ac_cv_have_decl_cpow=yes ac_cv_have_decl_csin=yes ac_cv_have_decl_csinh=yes ac_cv_have_decl_ctan=yes ac_cv_have_decl_ctanh=yes INSTALL_INFO="/usr/local/bin/install-info" MAKEINFO="/usr/local/bin/makeinfo" ac_cv_path_KPSEWHICH="" ac_cv_path_MAKEINDEX="" ac_cv_path_PDFLATEX="" ac_cv_path_PDFTEX="" ac_cv_path_TEX="" ac_cv_path_TEXI2DVI="" ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/ usr/local/bin/perl F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran48" FC="gfortran48" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc48" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc48" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R/work HOME=/wrkdirs/usr/ports/math/R/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc48" CFLAGS="-O2 -pipe -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing" CPP="cpp48" CPPFLAGS="-I/usr/local/include -DLIBICONV_PLUG" LDFLAGS=" -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc 48 -L/usr/local/lib/gcc48 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48" LIBS="" CXX="g++48" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_SOVERSION="1" RBLAS_SOVERSION="2" RLAPACK_SOVERSION="4" LAPACK="" NLS="" LIBR="" PANGOCAIRO="" TCLTK="" X11="" PDF_MANUAL="@comment " GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.20.3 PERL_VER=5.20 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.20 DOCSDIR="share/doc/R" EXAMPLESDIR="share/examples/R" DATADIR="share/R" WWWDIR="www/R" ETCDIR="etc/R" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/R DOCSDIR=/usr/local/share/doc/R EXAMPLESDIR=/usr/local/share/examples/R WWWDIR=/usr/local/www/R ETCDIR=/usr/local/etc/R --End SUB_LIST-- ---Begin make.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc NM=/nxb-bin/usr/bin/nm MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as <snip> checking for snprintf... (cached) yes checking for wcslen... (cached) yes checking whether _snprintf is declared... no checking whether _snwprintf is declared... no checking whether getc_unlocked is declared... (cached) yes checking for nl_langinfo and CODESET... (cached) yes checking for LC_MESSAGES... yes checking for CFPreferencesCopyAppValue... (cached) no checking for CFLocaleCopyCurrent... (cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... no checking for GNU gettext in libintl... yes checking whether to use NLS... yes checking where the gettext function comes from... external libintl checking how to link with libintl... /usr/local/lib/libintl.so -Wl,-rpath -Wl,/usr/local/lib Finished configuring src/extra/intl directory using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/f77_f2c config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands configure: WARNING: unrecognized options: --with-system-bzlib, --with-system-zlib, --with-system-pcre R is now configured for armv6-portbld-freebsd11.0 Source directory: . Installation directory: /usr/local C compiler: gcc48 -std=gnu99 -O2 -pipe -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing Fortran 77 compiler: gfortran48 -O -Wl,-rpath=/usr/local/lib/gcc48 C++ compiler: g++48 -O2 -pipe -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 C++11 compiler: g++48 -std=c++11 -O2 -pipe -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 Fortran 90/95 compiler: gfortran48 -Wl,-rpath=/usr/local/lib/gcc48 Obj-C compiler: gcc48 -g -O2 -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: readline, curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, shared BLAS, R profiling, memory profiling Capabilities skipped: Options not enabled: Recommended packages: yes configure: WARNING: you cannot build PDF versions of the R manuals configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: I could not determine a browser configure: WARNING: I could not determine a PDF viewer =========================================================================== =======================<phase: build >============================ ===> Building for R-3.3.0 creating src/scripts/R.fe mkdir ../../bin mkdir ../../include mkdir ../../../include/R_ext gfortran48 -fopenmp -fpic -O -Wl,-rpath=/usr/local/lib/gcc48 -c blas.f -o blas.o gfortran48 -fopenmp -fpic -O -Wl,-rpath=/usr/local/lib/gcc48 -c cmplxblas.f -o cmplxblas.o gcc48 -std=gnu99 -fpic -shared -fopenmp -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -B/usr/local/bin -Wl,-rpath=/usr/local/lib/gcc48 -L/usr/local/lib/gcc48 -o libRblas.so blas.o cmplxblas.o -lgfortran -lm mkdir /wrkdirs/usr/ports/math/R/work/R-3.3.0/lib making regcomp.d from regcomp.c making regerror.d from regerror.c making regexec.d from regexec.c making tre-ast.d from tre-ast.c making tre-compile.d from tre-compile.c making tre-match-approx.d from tre-match-approx.c making tre-match-backtrack.d from tre-match-backtrack.c making tre-match-parallel.d from tre-match-parallel.c making tre-mem.d from tre-mem.c making tre-parse.d from tre-parse.c making tre-stack.d from tre-stack.c making xmalloc.d from xmalloc.c gcc48 -std=gnu99 -I. -I. -I../../../src/include -I../../../src/include -I/usr/local/include -DLIBICONV_PLUG -DHAVE_CONFIG_H -fopenmp -fpic -O2 -pipe -DLIBICONV_PLUG -Wl,-rpath=/usr/local/lib/gcc48 -fno-strict-aliasing -fvisibility=hidden -c regcomp.c -o regcomp.o In file included from regcomp.c:18:0: tre-internal.h:65:0: warning: "TRE_CHAR_MAX" redefined [enabled by default] # define TRE_CHAR_MAX WCHAR_MAX ^ tre-internal.h:54:0: note: this is the location of the previous definition #define TRE_CHAR_MAX INT_MAX ^ tre-internal.h:169:3: error: unknown type name 'tre_cint_t' tre_cint_t code_min; ^ tre-internal.h:170:3: error: unknown type name 'tre_cint_t' tre_cint_t code_max; ^ *** Error code 1 Stop. make[5]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.0/src/extra/tre *** Error code 1 Stop. make[4]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.0/src/extra/tre *** Error code 1 Stop. make[3]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.0/src/extra *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.0/src *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/math/R/work/R-3.3.0 *** Error code 1 Stop. make: stopped in /usr/ports/math/R _______________________________________________ [email protected] mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "[email protected]"
