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Please investigate the failure and submit a PR to fix
build.

Maintainer:     mz...@m.u-tokyo.ac.jp
Last committer: swi...@freebsd.org
Ident:          $FreeBSD: head/biology/muscle/Makefile 403676 2015-12-13 
16:07:27Z swills $
Log URL:        
http://beefy7.nyi.freebsd.org/data/head-mips-default/p421967_s305757/logs/muscle-3.8.31.log
Build URL:      
http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p421967_s305757
Log:

====>> Building biology/muscle
build started at Thu Sep 22 10:05:44 UTC 2016
port directory: /usr/ports/biology/muscle
building for: FreeBSD head-mips-default-job-18 12.0-CURRENT FreeBSD 
12.0-CURRENT r305757 mips
maintained by: mz...@m.u-tokyo.ac.jp
Makefile ident:      $FreeBSD: head/biology/muscle/Makefile 403676 2015-12-13 
16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1200005
Jail OSVERSION: 1200007




!!! Jail is newer than host. (Jail: 1200007, Host: 1200005) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
UNAME_v=FreeBSD 12.0-CURRENT r305757
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=mips
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
QEMU_EMULATING=1
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=muscle-3.8.31
OSREL=12.0
_OSRELEASE=12.0-CURRENT
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=24
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1200007
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work  
HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work  
HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 444"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/muscle"
EXAMPLESDIR="share/examples/muscle"
DATADIR="share/muscle"
WWWDIR="www/muscle"
ETCDIR="etc/muscle"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/muscle
DOCSDIR=/usr/local/share/doc/muscle
EXAMPLESDIR=/usr/local/share/examples/muscle
WWWDIR=/usr/local/www/muscle
ETCDIR=/usr/local/etc/muscle
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
MACHINE=mips
MACHINE_ARCH=mips
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
=======================<phase: check-sanity   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   muscle-3.8.31 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_1.txz
[head-mips-default-job-18] Installing pkg-1.8.7_1...
[head-mips-default-job-18] Extracting pkg-1.8.7_1: .......... done
===>   muscle-3.8.31 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of muscle-3.8.31
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by muscle-3.8.31 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by muscle-3.8.31 for building
=> SHA256 Checksum OK for muscle3.8.31_src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by muscle-3.8.31 for building
===>  Extracting for muscle-3.8.31
=> SHA256 Checksum OK for muscle3.8.31_src.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for muscle-3.8.31
===>   Converting DOS text files to UNIX text files
===>  Applying FreeBSD patches for muscle-3.8.31
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for muscle-3.8.31
===========================================================================
=======================<phase: build          >============================
===>  Building for muscle-3.8.31
chmod +x ./mk
./mk
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
./mk: cannot create /dev/tty: Operation not supported
c++: tracebackopt.o: No such file or directory
c++: tracebacksw.o: No such file or directory
c++: treefrommsa.o: No such file or directory
c++: typetostr.o: No such file or directory
c++: upgma2.o: No such file or directory
c++: usage.o: No such file or directory
c++: validateids.o: No such file or directory
c++: vtml2.o: No such file or directory
c++: writescorefile.o: No such file or directory
c++: No input files specified
ls: muscle: No such file or directory
sum: muscle: No such file or directory
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/muscle/work/muscle3.8.31/src
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/muscle
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