You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     po...@freebsd.org
Last committer: swi...@freebsd.org
Ident:          $FreeBSD: branches/2016Q4/biology/avida/Makefile 403676 
2015-12-13 16:07:27Z swills $
Log URL:        
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/423629/logs/avida-2.12.4.log
Build URL:      
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=423629
Log:

====>> Building biology/avida
build started at Tue Oct 11 07:44:47 UTC 2016
port directory: /usr/ports/biology/avida
building for: FreeBSD 110arm64-quarterly-job-08 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 r306420 arm64
maintained by: po...@freebsd.org
Makefile ident:      $FreeBSD: branches/2016Q4/biology/avida/Makefile 403676 
2015-12-13 16:07:27Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1 r306420
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=avida-2.12.4
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
===> The following configuration options are available for avida-2.12.4:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work  
HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/avida/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/avida/work  
HOME=/wrkdirs/usr/ports/biology/avida/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
CMAKE_BUILD_TYPE="release"
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/avida"
EXAMPLESDIR="share/examples/avida"
DATADIR="share/avida"
WWWDIR="www/avida"
ETCDIR="etc/avida"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/avida
DOCSDIR=/usr/local/share/doc/avida
EXAMPLESDIR=/usr/local/share/examples/avida
WWWDIR=/usr/local/www/avida
ETCDIR=/usr/local/etc/avida
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   avida-2.12.4 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.7_3.txz
[110arm64-quarterly-job-08] Installing pkg-1.8.7_3...
[110arm64-quarterly-job-08] Extracting pkg-1.8.7_3: .......... done
===>   avida-2.12.4 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of avida-2.12.4
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
=> SHA256 Checksum OK for avida-2.12.4-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:

The avida port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License GPLv3 accepted by the user
===> Fetching all distfiles required by avida-2.12.4 for building
===>  Extracting for avida-2.12.4
=> SHA256 Checksum OK for avida-2.12.4-src.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for avida-2.12.4
===>  Applying FreeBSD patches for avida-2.12.4
===========================================================================
=======================<phase: build-depends  >============================
===>   avida-2.12.4 depends on file: /usr/local/bin/cmake - not found
===>   Installing existing package /packages/All/cmake-3.6.2.txz
[110arm64-quarterly-job-08] Installing cmake-3.6.2...
[110arm64-quarterly-job-08] `-- Installing expat-2.2.0...
[110arm64-quarterly-job-08] `-- Extracting expat-2.2.0: .......... done
[110arm64-quarterly-job-08] `-- Installing cmake-modules-3.6.2...
[110arm64-quarterly-job-08] `-- Extracting cmake-modules-3.6.2: .......... done
[110arm64-quarterly-job-08] `-- Installing curl-7.50.3...
[110arm64-quarterly-job-08] |   `-- Installing ca_root_nss-3.27...
[110arm64-quarterly-job-08] |   `-- Extracting ca_root_nss-3.27: ....... done
[110arm64-quarterly-job-08] `-- Extracting curl-7.50.3: .......... done
[110arm64-quarterly-job-08] `-- Installing libarchive-3.2.1,1...
[110arm64-quarterly-job-08] |   `-- Installing liblz4-131...
[110arm64-quarterly-job-08] |   `-- Extracting liblz4-131: .......... done
[110arm64-quarterly-job-08] |   `-- Installing lzo2-2.09...
[110arm64-quarterly-job-08] |   `-- Extracting lzo2-2.09: .......... done
[110arm64-quarterly-job-08] `-- Extracting libarchive-3.2.1,1: .......... done
[110arm64-quarterly-job-08] `-- Installing jsoncpp-1.7.3...
[110arm64-quarterly-job-08] `-- Extracting jsoncpp-1.7.3: .......... done
[110arm64-quarterly-job-08] Extracting cmake-3.6.2: .......... done
Message from ca_root_nss-3.27:
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   avida-2.12.4 depends on file: /usr/local/bin/cmake - found
===>   Returning to build of avida-2.12.4
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for avida-2.12.4
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/biology/avida/work/.build
-- The C compiler identification is Clang 3.8.0
-- The CXX compiler identification is Clang 3.8.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Performing Test HAVE_FUSED_MADD
-- Performing Test HAVE_FUSED_MADD - Failed
-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    CMAKE_C_FLAGS_DEBUG
    CMAKE_C_FLAGS_RELEASE
    CMAKE_MODULE_LINKER_FLAGS
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: 
/wrkdirs/usr/ports/biology/avida/work/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for avida-2.12.4
/usr/local/bin/cmake -H/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src 
-B/wrkdirs/usr/ports/biology/avida/work/.build --check-build-system 
CMakeFiles/Makefile.cmake 0
/usr/local/bin/cmake -E cmake_progress_start 
/wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles 
/wrkdirs/usr/ports/biology/avida/work/.build/CMakeFiles/progress.marks
/usr/bin/make -f CMakeFiles/Makefile2 all
/usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make 
libs/apto/src/CMakeFiles/aptostatic.dir/depend
cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E 
cmake_depends "Unix Makefiles" 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src 
/wrkdirs/usr/ports/biology/avida/work/.build 
/wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src 
/wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src/CMakeFiles/aptostatic.dir/DependInfo.cmake
Scanning dependencies of target aptostatic
/usr/bin/make -f libs/apto/src/CMakeFiles/aptostatic.dir/build.make 
libs/apto/src/CMakeFiles/aptostatic.dir/build
[  1%] Building CXX object 
libs/apto/src/CMakeFiles/aptostatic.dir/core/FileSystem.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/FileSystem.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc
[  1%] Building CXX object 
libs/apto/src/CMakeFiles/aptostatic.dir/core/RefCount.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/RefCount.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc
[  2%] Building CXX object 
libs/apto/src/CMakeFiles/aptostatic.dir/core/Thread.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/core/Thread.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc
[  3%] Building CXX object 
libs/apto/src/CMakeFiles/aptostatic.dir/platform/Platform.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/platform/Platform.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc
[  3%] Building CXX object 
libs/apto/src/CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o 
-c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc
[  4%] Building CXX object 
libs/apto/src/CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:1052:21:
 warning: unsequenced modification and access to 'idx_inc' [-Wunsequenced]
    while (row_diff[++idx_inc] == row_marginals[idx_inc]) ;
                    ^                           ~~~~~~~
1 warning generated.
[  4%] Linking CXX static library ../../../lib/libapto.a
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && 
/usr/local/bin/cmake -P CMakeFiles/aptostatic.dir/cmake_clean_target.cmake
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && 
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptostatic.dir/link.txt 
--verbose=1
/usr/bin/ar qc ../../../lib/libapto.a  
CMakeFiles/aptostatic.dir/core/FileSystem.cc.o 
CMakeFiles/aptostatic.dir/core/RefCount.cc.o 
CMakeFiles/aptostatic.dir/core/Thread.cc.o 
CMakeFiles/aptostatic.dir/platform/Platform.cc.o 
CMakeFiles/aptostatic.dir/stat/ContingencyTable.cc.o 
CMakeFiles/aptostatic.dir/stat/FishersExact.cc.o
/usr/bin/ranlib ../../../lib/libapto.a
[  4%] Built target aptostatic
/usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make 
libs/apto/src/CMakeFiles/aptoshared.dir/depend
cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E 
cmake_depends "Unix Makefiles" 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src 
/wrkdirs/usr/ports/biology/avida/work/.build 
/wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src 
/wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src/CMakeFiles/aptoshared.dir/DependInfo.cmake
Scanning dependencies of target aptoshared
/usr/bin/make -f libs/apto/src/CMakeFiles/aptoshared.dir/build.make 
libs/apto/src/CMakeFiles/aptoshared.dir/build
[  4%] Building CXX object 
libs/apto/src/CMakeFiles/aptoshared.dir/core/FileSystem.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
-Daptoshared_EXPORTS 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
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-Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/FileSystem.cc.o 
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/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/FileSystem.cc
[  5%] Building CXX object 
libs/apto/src/CMakeFiles/aptoshared.dir/core/RefCount.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
-Daptoshared_EXPORTS 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -fPIC -o CMakeFiles/aptoshared.dir/core/RefCount.cc.o 
-c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/RefCount.cc
[  5%] Building CXX object 
libs/apto/src/CMakeFiles/aptoshared.dir/core/Thread.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
-Daptoshared_EXPORTS 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
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/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/core/Thread.cc
[  6%] Building CXX object 
libs/apto/src/CMakeFiles/aptoshared.dir/platform/Platform.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
-Daptoshared_EXPORTS 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
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-Wno-trigraphs -DNDEBUG -fPIC -o 
CMakeFiles/aptoshared.dir/platform/Platform.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/platform/Platform.cc
[  6%] Building CXX object 
libs/apto/src/CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
-Daptoshared_EXPORTS 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -fPIC -o 
CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/ContingencyTable.cc
[  7%] Building CXX object 
libs/apto/src/CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && /usr/bin/c++   
-Daptoshared_EXPORTS 
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/../include
 -O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -fPIC -o 
CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/apto/src/stat/FishersExact.cc:1052:21:
 warning: unsequenced modification and access to 'idx_inc' [-Wunsequenced]
    while (row_diff[++idx_inc] == row_marginals[idx_inc]) ;
                    ^                           ~~~~~~~
1 warning generated.
[  7%] Linking CXX shared library ../../../lib/libapto.so
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/apto/src && 
/usr/local/bin/cmake -E cmake_link_script CMakeFiles/aptoshared.dir/link.txt 
--verbose=1
/usr/bin/c++  -fPIC -O2 -pipe -fno-strict-aliasing  -funroll-loops 
-fstrict-aliasing -ftree-vectorize -fvisibility-inlines-hidden -Wextra 
-Wno-unknown-pragmas -Wno-trigraphs -DNDEBUG  -shared -Wl,-soname,libapto.so -o 
../../../lib/libapto.so CMakeFiles/aptoshared.dir/core/FileSystem.cc.o 
CMakeFiles/aptoshared.dir/core/RefCount.cc.o 
CMakeFiles/aptoshared.dir/core/Thread.cc.o 
CMakeFiles/aptoshared.dir/platform/Platform.cc.o 
CMakeFiles/aptoshared.dir/stat/ContingencyTable.cc.o 
CMakeFiles/aptoshared.dir/stat/FishersExact.cc.o -pthread -pthread 
[  7%] Built target aptoshared
/usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make 
libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/depend
cd /wrkdirs/usr/ports/biology/avida/work/.build && /usr/local/bin/cmake -E 
cmake_depends "Unix Makefiles" 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4 
/wrkdirs/usr/ports/biology/avida/work/.build 
/wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4 
/wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/DependInfo.cmake
Scanning dependencies of target tcmalloc-1.4
/usr/bin/make -f libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build.make 
libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/build
[  7%] Building CXX object 
libs/tcmalloc-1.4/CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o
cd /wrkdirs/usr/ports/biology/avida/work/.build/libs/tcmalloc-1.4 && 
/usr/bin/c++    
-I/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src 
-O2 -pipe -fno-strict-aliasing  -funroll-loops -fstrict-aliasing 
-ftree-vectorize -fvisibility-inlines-hidden -Wextra -Wno-unknown-pragmas 
-Wno-trigraphs -DNDEBUG -o 
CMakeFiles/tcmalloc-1.4.dir/src/atomicops-internals-x86.cc.o -c 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc
In file included from 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc:56:
In file included from 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops.h:126:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:98:26:
 error: invalid output constraint '=a' in asm
                       : "=a" (prev)
                         ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:107:32:
 warning: value size does not match register size specified by the constraint 
and modifier [-Wasm-operand-widths]
                       : "=r" (new_value)
                               ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:106:34:
 note: use constraint modifier "w"
  __asm__ __volatile__("xchgl %1,%0"  // The lock prefix is implicit for xchg.
                                 ^~
                                 %w0
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:117:32:
 warning: value size does not match register size specified by the constraint 
and modifier [-Wasm-operand-widths]
                       : "+r" (temp), "+m" (*ptr)
                               ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:116:37:
 note: use constraint modifier "w"
  __asm__ __volatile__("lock; xaddl %0,%1"
                                    ^~
                                    %w0
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:127:32:
 warning: value size does not match register size specified by the constraint 
and modifier [-Wasm-operand-widths]
                       : "+r" (temp), "+m" (*ptr)
                               ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:126:37:
 note: use constraint modifier "w"
  __asm__ __volatile__("lock; xaddl %0,%1"
                                    ^~
                                    %w0
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:386:5:
 error: unknown register name 'st' in asm
                         "st", "st(1)", "st(2)", "st(3)", "st(4)",
                         ^
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.h:409:26:
 error: unknown register name 'st' in asm
                         "st", "st(1)", "st(2)", "st(3)", "st(4)",
                         ^
In file included from 
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/atomicops-internals-x86.cc:57:
/wrkdirs/usr/ports/biology/avida/work/avida-2.12.4-src/libs/tcmalloc-1.4/src/basictypes.h:105:51:
 warning: shifting a negative signed value is undefined [-Wshift-negative-value]
const  int64 kint64min =  ( ((( int64) kint32min) << 32) | 0 );
                             ~~~~~~~~~~~~~~~~~~~~ ^
4 warnings and 3 errors generated.
*** Error code 1

Stop.
make[3]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build
*** Error code 1

Stop.
make[2]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/avida/work/.build
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/avida
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