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Maintainer: [email protected] Last committer: [email protected] Ident: $FreeBSD: branches/2016Q4/science/openbabel/Makefile 413746 2016-04-21 16:43:14Z swills $ Log URL: http://beefy16.nyi.freebsd.org/data/110mips64-quarterly/426125/logs/openbabel-2.3.2_2.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=110mips64-quarterly&build=426125 Log: ====>> Building science/openbabel build started at Tue Nov 15 01:11:28 UTC 2016 port directory: /usr/ports/science/openbabel building for: FreeBSD 110mips64-quarterly-job-27 11.0-RELEASE-p3 FreeBSD 11.0-RELEASE-p3 r308202 mips maintained by: [email protected] Makefile ident: $FreeBSD: branches/2016Q4/science/openbabel/Makefile 413746 2016-04-21 16:43:14Z swills $ Poudriere version: 3.1.14 Host OSVERSION: 1200010 Jail OSVERSION: 1100122 Job Id: 27 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips64 UNAME_m=mips ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-RELEASE-p3 r308202 UNAME_r=11.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=mips64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110mips64-quarterly/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.3.2_2 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p3 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=28 PWD=/usr/local/poudriere/data/.m/110mips64-quarterly/ref/.p/pool MASTERNAME=110mips64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.3.2_2: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.3.2" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=mips MACHINE_ARCH=mips64 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> openbabel-2.3.2_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.8.txz [110mips64-quarterly-job-27] Installing pkg-1.8.8... [110mips64-quarterly-job-27] Extracting pkg-1.8.8: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> Fetching all distfiles required by openbabel-2.3.2_2 for building =========================================================================== =======================<phase: checksum >============================ ===> Fetching all distfiles required by openbabel-2.3.2_2 for building => SHA256 Checksum OK for openbabel-2.3.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> Fetching all distfiles required by openbabel-2.3.2_2 for building ===> Extracting for openbabel-2.3.2_2 => SHA256 Checksum OK for openbabel-2.3.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for openbabel-2.3.2_2 ===> Applying FreeBSD patches for openbabel-2.3.2_2 /nxb-bin/usr/bin/sed -i.bak -e '/pkgconfig/s,${LIB_INSTALL_DIR},libdata,' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/CMakeLists.txt /nxb-bin/usr/bin/sed -i.bak -e 's,share/man,man,' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/doc/CMakeLists.txt /nxb-bin/usr/bin/sed -i.bak -e '/find_package(Cairo)/d' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/CMakeLists.txt =========================================================================== =======================<phase: build-depends >============================ ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - not found ===> Installing existing package /packages/All/eigen-3.2.9_1.txz [110mips64-quarterly-job-27] Installing eigen-3.2.9_1... [110mips64-quarterly-job-27] Extracting eigen-3.2.9_1: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.6.2.txz [110mips64-quarterly-job-27] Installing cmake-3.6.2... [110mips64-quarterly-job-27] `-- Installing expat-2.2.0... [110mips64-quarterly-job-27] `-- Extracting expat-2.2.0: .......... done [110mips64-quarterly-job-27] `-- Installing cmake-modules-3.6.2... [110mips64-quarterly-job-27] `-- Extracting cmake-modules-3.6.2: .......... done [110mips64-quarterly-job-27] `-- Installing curl-7.51.0_1... [110mips64-quarterly-job-27] | `-- Installing ca_root_nss-3.27.1... [110mips64-quarterly-job-27] | `-- Extracting ca_root_nss-3.27.1: ....... done [110mips64-quarterly-job-27] `-- Extracting curl-7.51.0_1: .......... done [110mips64-quarterly-job-27] `-- Installing libarchive-3.2.1,1... [110mips64-quarterly-job-27] | `-- Installing liblz4-131... [110mips64-quarterly-job-27] | `-- Extracting liblz4-131: .......... done [110mips64-quarterly-job-27] | `-- Installing lzo2-2.09... [110mips64-quarterly-job-27] | `-- Extracting lzo2-2.09: .......... done [110mips64-quarterly-job-27] `-- Extracting libarchive-3.2.1,1: .......... done [110mips64-quarterly-job-27] `-- Installing jsoncpp-1.7.3... [110mips64-quarterly-job-27] `-- Extracting jsoncpp-1.7.3: .......... done [110mips64-quarterly-job-27] Extracting cmake-3.6.2: .......... done Message from ca_root_nss-3.27.1: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.12.txz [110mips64-quarterly-job-27] Installing python27-2.7.12... [110mips64-quarterly-job-27] `-- Installing libffi-3.2.1... [110mips64-quarterly-job-27] | `-- Installing indexinfo-0.2.5... [110mips64-quarterly-job-27] | `-- Extracting indexinfo-0.2.5: .... done [110mips64-quarterly-job-27] `-- Extracting libffi-3.2.1: .......... done [110mips64-quarterly-job-27] `-- Installing gettext-runtime-0.19.8.1... [110mips64-quarterly-job-27] `-- Extracting gettext-runtime-0.19.8.1: .......... done [110mips64-quarterly-job-27] `-- Installing readline-6.3.8... [110mips64-quarterly-job-27] `-- Extracting readline-6.3.8: .......... done [110mips64-quarterly-job-27] Extracting python27-2.7.12: .......... done Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: lib-depends >============================ ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.4.txz [110mips64-quarterly-job-27] Installing libxml2-2.9.4... [110mips64-quarterly-job-27] Extracting libxml2-2.9.4: .......... done ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for openbabel-2.3.2_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/openbabel/work/.build -- The C compiler identification is GNU 4.2.1 -- The CXX compiler identification is GNU 4.2.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- Check for working CXX compiler: /nxb-bin/usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Using included inchi library. -- Found LibXml2: /usr/local/lib/libxml2.so (found version "2.9.4") -- Found ZLIB: /usr/lib/libz.so (found version "1.2.8") -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES wxWidgets_INCLUDE_DIRS) -- Looking for conio.h -- Looking for conio.h - not found -- Looking for sys/time.h -- Looking for sys/time.h - found -- Looking for time.h -- Looking for time.h - found -- Looking for strings.h -- Looking for strings.h - found -- Looking for rpc/xdr.h -- Looking for rpc/xdr.h - not found -- Looking for regex.h -- Looking for regex.h - found -- Looking for C++ include sstream CMake Error: Generator: execution of make failed. Make command was: "/usr/bin/make" "cmTC_f63ea/fast" -- Looking for C++ include sstream - not found -- Looking for rint -- Looking for rint - not found -- Looking for snprintf -- Looking for snprintf - found -- Looking for sranddev -- Looking for sranddev - found -- Looking for strcasecmp -- Looking for strcasecmp - found -- Looking for strncasecmp -- Looking for strncasecmp - found -- Looking for dlopen in dl -- Looking for dlopen in dl - not found -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of clock_t -- Check size of clock_t - done -- Performing Test SCANDIR_NEEDS_CONST -- Performing Test SCANDIR_NEEDS_CONST - Failed -- Performing Test HAVE_GCC_VISIBILITY -- Performing Test HAVE_GCC_VISIBILITY - Success -- Found Eigen3: /usr/local/include/eigen3 (Required is at least version "2.91.0") -- Could NOT find Cairo. PNG output will NOT be supported. -- Looking for getopt -- Looking for getopt - found -- GUI will not be built CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:14 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:54:31 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:25 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) in cmake/modules/UsePythonTest.cmake: Syntax Warning in cmake code at /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/cmake/modules/UsePythonTest.cmake:57:39 Argument not separated from preceding token by whitespace. Call Stack (most recent call first): test/CMakeLists.txt:171 (include) This warning is for project developers. Use -Wno-dev to suppress it. -- Found PythonInterp: /usr/local/bin/python2.7 (found version "2.7.12") -- Found PythonLibs: /usr/local/lib/libpython2.7.so (found version "2.7.12") -- Python bindings will be compiled -- Configuring incomplete, errors occurred! See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeOutput.log". See also "/wrkdirs/usr/ports/science/openbabel/work/.build/CMakeFiles/CMakeError.log". *** Error code 1 Stop. make: stopped in /usr/ports/science/openbabel _______________________________________________ [email protected] mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "[email protected]"
