You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4...@gmail.com
Last committer: swi...@freebsd.org
Ident:          $FreeBSD: branches/2016Q4/biology/plinkseq/Makefile 413746 
2016-04-21 16:43:14Z swills $
Log URL:        
http://thunderx1.nyi.freebsd.org/data/110arm64-quarterly/427426/logs/plinkseq-0.10.log
Build URL:      
http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-quarterly&build=427426
Log:

====>> Building biology/plinkseq
build started at Thu Dec  1 09:04:31 UTC 2016
port directory: /usr/ports/biology/plinkseq
building for: FreeBSD 110arm64-quarterly-job-20 11.0-RELEASE-p1 FreeBSD 
11.0-RELEASE-p1 arm64
maintained by: bacon4...@gmail.com
Makefile ident:      $FreeBSD: branches/2016Q4/biology/plinkseq/Makefile 413746 
2016-04-21 16:43:14Z swills $
Poudriere version: 3.1.14
Host OSVERSION: 1100121
Jail OSVERSION: 1100122
Job Id: 20




!!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_v=FreeBSD 11.0-RELEASE-p1
UNAME_r=11.0-RELEASE-p1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
OPSYS=FreeBSD
ARCH=aarch64
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110arm64-quarterly/ref
UID=0
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=plinkseq-0.10
OSREL=11.0
_OSRELEASE=11.0-RELEASE-p1
PYTHONBASE=/usr/local
OLDPWD=/
_SMP_CPUS=48
PWD=/usr/local/poudriere/data/.m/110arm64-quarterly/ref/.p/pool
MASTERNAME=110arm64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.14
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
CONFIGURE_MAX_CMD_LEN=262144
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
_JAVA_OS_LIST_REGEXP=native\|linux
OSVERSION=1100122
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 444"  
BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/plinkseq"
EXAMPLESDIR="share/examples/plinkseq"
DATADIR="share/plinkseq"
WWWDIR="www/plinkseq"
ETCDIR="etc/plinkseq"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/plinkseq
DOCSDIR=/usr/local/share/doc/plinkseq
EXAMPLESDIR=/usr/local/share/examples/plinkseq
WWWDIR=/usr/local/www/plinkseq
ETCDIR=/usr/local/etc/plinkseq
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   plinkseq-0.10 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.8.8.txz
[110arm64-quarterly-job-20] Installing pkg-1.8.8...
[110arm64-quarterly-job-20] Extracting pkg-1.8.8: .......... done
===>   plinkseq-0.10 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of plinkseq-0.10
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10 for building
=> SHA256 Checksum OK for plinkseq-src-0.10.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10 for building
===>  Extracting for plinkseq-0.10
=> SHA256 Checksum OK for plinkseq-src-0.10.tgz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for plinkseq-0.10
/usr/bin/sed -i.bak  -e 's|PF_INET|AF_INET|g'  
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/mongoose/sources/lib/mongoose.c
/usr/bin/sed -i.bak  -e 's|g++|c++|g'  -e 's|gcc|cc|g'  -e 's|CXXFLAGS = 
-O3|CXXFLAGS = -O2 -pipe -fno-strict-aliasing |g'  -e 's|ALL_CFLAGS 
=-O3|ALL_CFLAGS = -O2 -pipe  -fno-strict-aliasing|g'  
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/config_defs.Makefile
/usr/bin/sed -i.bak  -e 's| -ldl||g'  -e 's| $(STATIC_FLAG)||g'  
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/Makefile
===========================================================================
=======================<phase: build-depends  >============================
===>   plinkseq-0.10 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_1.txz
[110arm64-quarterly-job-20] Installing gmake-4.2.1_1...
[110arm64-quarterly-job-20] `-- Installing indexinfo-0.2.5...
[110arm64-quarterly-job-20] `-- Extracting indexinfo-0.2.5: .... done
[110arm64-quarterly-job-20] `-- Installing gettext-runtime-0.19.8.1...
[110arm64-quarterly-job-20] `-- Extracting gettext-runtime-0.19.8.1: .......... 
done
[110arm64-quarterly-job-20] Extracting gmake-4.2.1_1: .......... done
===>   plinkseq-0.10 depends on executable: gmake - found
===>   Returning to build of plinkseq-0.10
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for plinkseq-0.10
===========================================================================
=======================<phase: build          >============================
===>  Building for plinkseq-0.10
gmake[1]: Entering directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
mkdir -p build/lib
mkdir -p build/execs
making depend sources/execs/pseq.cpp
making depend sources/execs/gcol.cpp
making depend sources/execs/browser.cpp
making depend sources/execs/behead.cpp
making depend sources/execs/mm.cpp
making depend sources/execs/smp.cpp
making depend sources/execs/tab2vcf.cpp
making depend sources/execs/mongoose.cpp
making depend sources/execs/pdas.cpp
gmake ./sources/plinkseq ./sources/pseq ./sources/util ./sources/mongoose 
./sources/browser ./sources/pdas ./sources/ext
gmake[2]: Entering directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
gmake DBGCXXFLAGS="" USE_DEBUG="" -C sources/plinkseq
gmake[3]: Entering directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq'
mkdir -p build/lib
making depend sources/lib/sqlite3.c
c++: warning: treating 'c' input as 'c++' when in C++ mode, this behavior is 
deprecated
making depend sources/lib/network.cpp
making depend sources/lib/seqdb.cpp
making depend sources/lib/genotype.cpp
making depend sources/lib/reffuncs.cpp
making depend sources/lib/r8lib.cpp
making depend sources/lib/statistics.cpp
making depend sources/lib/netfunc.cpp
making depend sources/lib/filemap.cpp
making depend sources/lib/matrix.cpp
making depend sources/lib/allele.cpp
<snip>
      if ( tok( 8 ) != "" && tok( 8 ) != "." )
                    ^  ~~
sources/lib/protdb.cpp:267:39: warning: result of comparison against a string 
literal is unspecified (use strncmp instead) [-Wstring-compare]
      if ( tok( 8 ) != "" && tok( 8 ) != "." )
                                      ^  ~~~
6 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing   -I./sources/include 
-I../ext/sources/include/  sources/lib/vcfz.cpp -o build/lib/vcfz.o
In file included from sources/lib/vcfz.cpp:2:
In file included from ./sources/include/plinkseq/vcfz.h:6:
./sources/include/plinkseq/meta.h:580:15: warning: enumeration values 
'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt ) 
                            ^
./sources/include/plinkseq/meta.h:617:15: warning: enumeration values 
'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt )
                            ^
In file included from sources/lib/vcfz.cpp:3:
In file included from ./sources/include/plinkseq/variant.h:19:
In file included from ./sources/include/plinkseq/filemap.h:33:
./sources/include/plinkseq/bcf.h:45:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= num2string.size() ) return false;
         ~ ^ ~
./sources/include/plinkseq/bcf.h:82:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= contig_num2string.size() ) return false;
         ~ ^ ~
In file included from sources/lib/vcfz.cpp:4:
In file included from ./sources/include/plinkseq/vardb.h:8:
./sources/include/plinkseq/mask.h:2151:5: warning: control reaches end of 
non-void function [-Wreturn-type]
    }
    ^
In file included from sources/lib/vcfz.cpp:4:
./sources/include/plinkseq/vardb.h:329:59: warning: control reaches end of 
non-void function [-Wreturn-type]
  bool compression( const bool b ) { using_compression=b; }
                                                          ^
6 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing   -I./sources/include 
-I../ext/sources/include/  sources/lib/vgroup.cpp -o build/lib/vgroup.o
In file included from sources/lib/vgroup.cpp:1:
In file included from ./sources/include/plinkseq/vgroup.h:4:
In file included from ./sources/include/plinkseq/variant.h:14:
In file included from ./sources/include/plinkseq/genotype.h:11:
In file included from ./sources/include/plinkseq/individual.h:8:
./sources/include/plinkseq/meta.h:580:15: warning: enumeration values 
'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt ) 
                            ^
./sources/include/plinkseq/meta.h:617:15: warning: enumeration values 
'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt )
                            ^
In file included from sources/lib/vgroup.cpp:1:
In file included from ./sources/include/plinkseq/vgroup.h:4:
In file included from ./sources/include/plinkseq/variant.h:19:
In file included from ./sources/include/plinkseq/filemap.h:33:
./sources/include/plinkseq/bcf.h:45:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= num2string.size() ) return false;
         ~ ^ ~
./sources/include/plinkseq/bcf.h:82:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= contig_num2string.size() ) return false;
         ~ ^ ~
In file included from sources/lib/vgroup.cpp:1:
In file included from ./sources/include/plinkseq/vgroup.h:6:
./sources/include/plinkseq/mask.h:2151:5: warning: control reaches end of 
non-void function [-Wreturn-type]
    }
    ^
In file included from sources/lib/vgroup.cpp:2:
In file included from ./sources/include/plinkseq/gstore.h:15:
./sources/include/plinkseq/vardb.h:329:59: warning: control reaches end of 
non-void function [-Wreturn-type]
  bool compression( const bool b ) { using_compression=b; }
                                                          ^
6 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing   -I./sources/include 
-I../ext/sources/include/  sources/lib/vardb.cpp -o build/lib/vardb.o
In file included from sources/lib/vardb.cpp:2:
In file included from ./sources/include/plinkseq/vardb.h:6:
In file included from ./sources/include/plinkseq/variant.h:14:
In file included from ./sources/include/plinkseq/genotype.h:11:
In file included from ./sources/include/plinkseq/individual.h:8:
./sources/include/plinkseq/meta.h:580:15: warning: enumeration values 
'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt ) 
                            ^
./sources/include/plinkseq/meta.h:617:15: warning: enumeration values 
'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt )
                            ^
In file included from sources/lib/vardb.cpp:2:
In file included from ./sources/include/plinkseq/vardb.h:6:
In file included from ./sources/include/plinkseq/variant.h:19:
In file included from ./sources/include/plinkseq/filemap.h:33:
./sources/include/plinkseq/bcf.h:45:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= num2string.size() ) return false;
         ~ ^ ~
./sources/include/plinkseq/bcf.h:82:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= contig_num2string.size() ) return false;
         ~ ^ ~
In file included from sources/lib/vardb.cpp:2:
In file included from ./sources/include/plinkseq/vardb.h:8:
./sources/include/plinkseq/mask.h:2151:5: warning: control reaches end of 
non-void function [-Wreturn-type]
    }
    ^
In file included from sources/lib/vardb.cpp:2:
./sources/include/plinkseq/vardb.h:329:59: warning: control reaches end of 
non-void function [-Wreturn-type]
  bool compression( const bool b ) { using_compression=b; }
                                                          ^
sources/lib/vardb.cpp:826:1: warning: control reaches end of non-void function 
[-Wreturn-type]
}
^
sources/lib/vardb.cpp:841:1: warning: control reaches end of non-void function 
[-Wreturn-type]
}
^
sources/lib/vardb.cpp:849:1: warning: control reaches end of non-void function 
[-Wreturn-type]
}
^
sources/lib/vardb.cpp:857:1: warning: control reaches end of non-void function 
[-Wreturn-type]
}
^
10 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing   -I./sources/include 
-I../ext/sources/include/  sources/lib/output.cpp -o build/lib/output.o
In file included from sources/lib/output.cpp:1:
In file included from ./sources/include/plinkseq/output.h:4:
In file included from ./sources/include/plinkseq/filemap.h:31:
./sources/include/plinkseq/meta.h:580:15: warning: enumeration values 
'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt ) 
                            ^
./sources/include/plinkseq/meta.h:617:15: warning: enumeration values 
'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt )
                            ^
In file included from sources/lib/output.cpp:1:
In file included from ./sources/include/plinkseq/output.h:4:
In file included from ./sources/include/plinkseq/filemap.h:33:
./sources/include/plinkseq/bcf.h:45:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= num2string.size() ) return false;
         ~ ^ ~
./sources/include/plinkseq/bcf.h:82:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= contig_num2string.size() ) return false;
         ~ ^ ~
4 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing   -I./sources/include 
-I../ext/sources/include/  sources/lib/svar.cpp -o build/lib/svar.o
In file included from sources/lib/svar.cpp:2:
In file included from ./sources/include/plinkseq/svar.h:5:
./sources/include/plinkseq/meta.h:580:15: warning: enumeration values 
'META_UNDEFINED' and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt ) 
                            ^
./sources/include/plinkseq/meta.h:617:15: warning: enumeration values 
'META_FLAG', 'META_UNDEFINED', and 'META_CHAR' not handled in switch [-Wswitch]
                    switch( m->mt )
                            ^
In file included from sources/lib/svar.cpp:3:
In file included from ./sources/include/plinkseq/mask.h:6:
In file included from ./sources/include/plinkseq/regions.h:10:
In file included from ./sources/include/plinkseq/variant.h:19:
In file included from ./sources/include/plinkseq/filemap.h:33:
./sources/include/plinkseq/bcf.h:45:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= num2string.size() ) return false;
         ~ ^ ~
./sources/include/plinkseq/bcf.h:82:12: warning: comparison of unsigned 
expression < 0 is always false [-Wtautological-compare]
    if ( p < 0 || p >= contig_num2string.size() ) return false;
         ~ ^ ~
In file included from sources/lib/svar.cpp:3:
./sources/include/plinkseq/mask.h:2151:5: warning: control reaches end of 
non-void function [-Wreturn-type]
    }
    ^
In file included from sources/lib/svar.cpp:5:
./sources/include/plinkseq/vardb.h:329:59: warning: control reaches end of 
non-void function [-Wreturn-type]
  bool compression( const bool b ) { using_compression=b; }
                                                          ^
6 warnings generated.
c++ -c -O2 -pipe -fno-strict-aliasing   -I./sources/include 
-I../ext/sources/include/  sources/lib/variant.pb.cpp -o build/lib/variant.pb.o
In file included from sources/lib/variant.pb.cpp:10:
In file included from ../ext/sources/include/google/protobuf/stubs/once.h:81:
In file included from 
../ext/sources/include/google/protobuf/stubs/atomicops.h:59:
./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: Host 
architecture was not detected as supported by protobuf
#error Host architecture was not detected as supported by protobuf
 ^
In file included from sources/lib/variant.pb.cpp:10:
In file included from ../ext/sources/include/google/protobuf/stubs/once.h:81:
./ext/sources/include/google/protobuf/stubs/atomicops.h:188:1: error: expected 
unqualified-id
GOOGLE_PROTOBUF_ATOMICOPS_ERROR
^
./ext/sources/include/google/protobuf/stubs/atomicops.h:160:41: note: expanded 
from macro 'GOOGLE_PROTOBUF_ATOMICOPS_ERROR'
#define GOOGLE_PROTOBUF_ATOMICOPS_ERROR \
                                        ^
In file included from sources/lib/variant.pb.cpp:10:
./ext/sources/include/google/protobuf/stubs/once.h:125:30: error: cannot 
initialize a parameter of type 'const volatile Atomic32 *' (aka 'const volatile 
int *') with an lvalue of type 'ProtobufOnceType *' (aka 'long *')
  if (internal::Acquire_Load(once) != ONCE_STATE_DONE) {
                             ^~~~
./ext/sources/include/google/protobuf/stubs/atomicops.h:129:48: note: passing 
argument to parameter 'ptr' here
Atomic32 Acquire_Load(volatile const Atomic32* ptr);
                                               ^
In file included from sources/lib/variant.pb.cpp:10:
./ext/sources/include/google/protobuf/stubs/once.h:134:30: error: cannot 
initialize a parameter of type 'const volatile Atomic32 *' (aka 'const volatile 
int *') with an lvalue of type 'ProtobufOnceType *' (aka 'long *')
  if (internal::Acquire_Load(once) != ONCE_STATE_DONE) {
                             ^~~~
./ext/sources/include/google/protobuf/stubs/atomicops.h:129:48: note: passing 
argument to parameter 'ptr' here
Atomic32 Acquire_Load(volatile const Atomic32* ptr);
                                               ^
4 errors generated.
gmake[3]: *** [../../config_rules.Makefile:16: build/lib/variant.pb.o] Error 1
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq'
gmake[2]: *** [Makefile:170: sources/plinkseq] Error 2
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
gmake[1]: *** [Makefile:165: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/plinkseq
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