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Maintainer: [email protected] Last committer: [email protected] Ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 437439 2017-04-01 15:23:30Z gerald $ Log URL: http://thunderx1.nyi.freebsd.org/data/110arm64-default/437513/logs/ncbi-blast+-2.5.0_1.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=110arm64-default&build=437513 Log: ====>> Building biology/ncbi-blast+ build started at Thu Apr 6 07:56:58 UTC 2017 port directory: /usr/ports/biology/ncbi-blast+ building for: FreeBSD 110arm64-default-job-07 11.0-RELEASE-p1 FreeBSD 11.0-RELEASE-p1 arm64 maintained by: [email protected] Makefile ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 437439 2017-04-01 15:23:30Z gerald $ Poudriere version: 3.1.17-2-g696b23bd Host OSVERSION: 1100121 Jail OSVERSION: 1100122 Job Id: 07 !!! Jail is newer than host. (Jail: 1100122, Host: 1100121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1100122 UNAME_v=FreeBSD 11.0-RELEASE-p1 UNAME_r=11.0-RELEASE-p1 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110arm64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=ncbi-blast+-2.5.0_1 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/110arm64-default/ref/.p/pool MASTERNAME=110arm64-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.17-2-g696b23bd SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- ncbi_cv_prog_amq_w=no MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc5" CFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing" CPP="cpp5" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5" LIBS="" CXX="g++5" CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/ usr/local/lib/gcc5" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib PERL_VERSION=5.24.1 PERL_VER=5.24 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.24 DOCSDIR="share/doc/blast+" EXAMPLESDIR="share/examples/blast+" DATADIR="share/blast+" WWWDIR="www/blast+" ETCDIR="etc/blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/blast+ DOCSDIR=/usr/local/share/doc/blast+ EXAMPLESDIR=/usr/local/share/examples/blast+ WWWDIR=/usr/local/www/blast+ ETCDIR=/usr/local/etc/blast+ --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=aarch64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.0 OSVERSION=1100122 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native\|linux _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ _OSRELEASE=11.0-RELEASE-p1 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ncbi-blast+-2.5.0_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [110arm64-default-job-07] Installing pkg-1.10.1... [110arm64-default-job-07] Extracting pkg-1.10.1: .......... done ===> ncbi-blast+-2.5.0_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.5.0_1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user => ncbi-blast-2.5.0+-src.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch http://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.5.0/ncbi-blast-2.5.0+-src.tar.gz ncbi-blast-2.5.0+-src.tar.gz 0 B 0 Bps ===> Fetching all distfiles required by ncbi-blast+-2.5.0_1 for building =========================================================================== =======================<phase: checksum >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.5.0_1 for building => SHA256 Checksum OK for ncbi-blast-2.5.0+-src.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License PD accepted by the user ===> Fetching all distfiles required by ncbi-blast+-2.5.0_1 for building ===> Extracting for ncbi-blast+-2.5.0_1 => SHA256 Checksum OK for ncbi-blast-2.5.0+-src.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for ncbi-blast+-2.5.0_1 ===> Applying FreeBSD patches for ncbi-blast+-2.5.0_1 /usr/bin/sed -i.bak -e 's|-D_THREAD_SAFE|-D_THREAD_SAFE -D__RUNETYPE_INTERNAL|' -e '/--infodir=DIR/d' -e '/--mandir=DIR/d' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/configure /usr/bin/sed -i.bak -e 's|@prefix@|/wrkdirs/usr/ports/biology/ncbi-blast+/work/stage@prefix@|g' /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.top =========================================================================== =======================<phase: build-depends >============================ ===> ncbi-blast+-2.5.0_1 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz [110arm64-default-job-07] Installing gmake-4.2.1_1... [110arm64-default-job-07] `-- Installing indexinfo-0.2.6... <snip> Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/tar.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/reader_zlib.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/lzo.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/zlib.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/bzip2.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream_util.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/streambuf.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/compress.cpp. /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/compress.cpp -o compress.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream.cpp -o stream.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/streambuf.cpp -o streambuf.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/stream_util.cpp -o stream_util.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/bzip2.cpp -o bzip2.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/zlib.cpp -o zlib.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/lzo.cpp -o lzo.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/reader_zlib.cpp -o reader_zlib.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/tar.cpp -o tar.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive.cpp -o archive.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_.cpp -o archive_.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/compress/api/archive_zip.cpp -o archive_zip.o /bin/rm -f libxcompress.a .libxcompress.a.stamp ar cr libxcompress.a compress.o stream.o streambuf.o stream_util.o bzip2.o zlib.o lzo.o reader_zlib.o tar.o archive.o archive_.o archive_zip.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libxcompress.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libxcompress.a /bin/ln -f .xcompress.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.xcompress.dep gmake[6]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress/api' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/compress' /usr/local/bin/gmake -C diff -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/diff' /usr/local/bin/gmake -C image -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/image' /usr/local/bin/gmake -C tables -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test/Makefile /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables TMPL=tables -w export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables TMPL=tables -w all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c. /usr/local/bin/gcc5 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/tables/raw_scoremat.c -o raw_scoremat.o /bin/rm -f libtables.a .libtables.a.stamp ar cr libtables.a raw_scoremat.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libtables.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libtables.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libtables.a /bin/ln -f .tables.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.tables.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/tables' /usr/local/bin/gmake -C creaders -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders TMPL=creaders -w export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders TMPL=creaders -w all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders/alnread.c. /usr/local/bin/gcc5 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/creaders/alnread.c -o alnread.o /bin/rm -f libcreaders.a .libcreaders.a.stamp ar cr libcreaders.a alnread.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libcreaders.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libcreaders.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libcreaders.a /bin/ln -f .creaders.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.creaders.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/creaders' /usr/local/bin/gmake -C sequtil -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil TMPL=sequtil -w export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil TMPL=sequtil -w all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_shared.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_tables.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_manip.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil.cpp. /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil.cpp -o sequtil.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert.cpp -o sequtil_convert.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_convert_imp.cpp -o sequtil_convert_imp.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_manip.cpp -o sequtil_manip.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_tables.cpp -o sequtil_tables.o /usr/local/bin/g++5 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc5 -fno-strict-aliasing -Wl,-rpath=/usr/local/lib/gcc5 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/sequtil/sequtil_shared.cpp -o sequtil_shared.o /bin/rm -f libsequtil.a .libsequtil.a.stamp ar cr libsequtil.a sequtil.o sequtil_convert.o sequtil_convert_imp.o sequtil_manip.o sequtil_tables.o sequtil_shared.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libsequtil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib /bin/ln -f libsequtil.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libsequtil.a /bin/ln -f .sequtil.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.sequtil.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/sequtil' /usr/local/bin/gmake -C bitset -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/util/bitset/demo/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT demo/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo/Makefile /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset/demo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/bitset' /usr/local/bin/gmake -C qparse -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/qparse' /usr/local/bin/gmake -C test -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/test' /usr/local/bin/gmake -C demo -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util/demo' gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/util' /usr/local/bin/gmake -C connect -w all_r || exit 5 gmake[3]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ext/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT ext/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/ext/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/test/Makefile /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/daemons/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT daemons/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect/daemons/Makefile /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connect -w export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connssl -w export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xxconnect -w export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xconnect -w export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=xthrserv -w export-headers gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[4]: Nothing to be done for 'export-headers'. gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' awk: can't open file /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/connect in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/xconnect in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat awk: can't open file /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat source line number 1 WARNING: couldn't find connect/xxconnect in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.flat /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect TMPL=connect -w all /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/scripts/common/impl/run_with_lock.sh: adjusting base from make_connect to make__connect_common per /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/.#lock-map. gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/parson.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_lbos.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_version.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_base64.c. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/connect/ncbi_local.c. Segmentation fault (core dumped) FAILED: src/connect/Makefile.connect.lib gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' /bin/rm -f libconnect.a .connect.dep .libconnect.a.stamp /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libconnect.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.connect.dep \ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/lib/libconnect-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/status/.connect-static.dep gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.meta_l:275: all.nonusr] Error 2 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build/connect' gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++/ReleaseMT/build' gmake[1]: *** [Makefile:24: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.5.0+-src/c++' *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-blast+ _______________________________________________ [email protected] mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "[email protected]"
