You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:          $FreeBSD: head/biology/plinkseq/Makefile 440746 2017-05-13 
03:35:51Z linimon $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p447380_s322073/logs/plinkseq-0.10_1.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p447380_s322073
Log:

====>> Building biology/plinkseq
build started at Sat Aug  5 07:10:12 UTC 2017
port directory: /usr/ports/biology/plinkseq
building for: FreeBSD head-armv6-default-job-02 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 arm
maintained by: bacon4...@gmail.com
Makefile ident:      $FreeBSD: head/biology/plinkseq/Makefile 440746 2017-05-13 
03:35:51Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 02




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
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--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
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--MAKE_ENV--
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ETCDIR=/usr/local/etc/plinkseq
--End SUB_LIST--

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MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
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#MASTER_SITE_FREEBSD=yes
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ARCH=armv6
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#### Misc Poudriere ####
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=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[head-armv6-default-job-02] Installing pkg-1.10.1...
[head-armv6-default-job-02] Extracting pkg-1.10.1: .......... done
===>   plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of plinkseq-0.10_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10_1 for building
=> SHA256 Checksum OK for plinkseq-src-0.10.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10_1 for building
===>  Extracting for plinkseq-0.10_1
=> SHA256 Checksum OK for plinkseq-src-0.10.tgz.
===========================================================================
=======================<phase: patch-depends  >============================
<snip>
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT cpp_string_field.lo -MD -MP -MF 
.deps/cpp_string_field.Tpo -c google/protobuf/compiler/cpp/cpp_string_field.cc 
-o cpp_string_field.o >/dev/null 2>&1
mv -f .deps/cpp_string_field.Tpo .deps/cpp_string_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_enum.lo -MD -MP -MF .deps/java_enum.Tpo -c -o java_enum.lo `test -f 
'google/protobuf/compiler/java/java_enum.cc' || echo 
'./'`google/protobuf/compiler/java/java_enum.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_enum.lo -MD -MP -MF .deps/java_enum.Tpo -c 
google/protobuf/compiler/java/java_enum.cc  -fPIC -DPIC -o .libs/java_enum.o
In file included from google/protobuf/compiler/java/java_enum.cc:43:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_enum.lo -MD -MP -MF .deps/java_enum.Tpo -c 
google/protobuf/compiler/java/java_enum.cc -o java_enum.o >/dev/null 2>&1
mv -f .deps/java_enum.Tpo .deps/java_enum.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_enum_field.lo -MD -MP -MF .deps/java_enum_field.Tpo -c -o 
java_enum_field.lo `test -f 'google/protobuf/compiler/java/java_enum_field.cc' 
|| echo './'`google/protobuf/compiler/java/java_enum_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_enum_field.lo -MD -MP -MF 
.deps/java_enum_field.Tpo -c google/protobuf/compiler/java/java_enum_field.cc  
-fPIC -DPIC -o .libs/java_enum_field.o
In file included from google/protobuf/compiler/java/java_enum_field.cc:44:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_enum_field.lo -MD -MP -MF 
.deps/java_enum_field.Tpo -c google/protobuf/compiler/java/java_enum_field.cc 
-o java_enum_field.o >/dev/null 2>&1
mv -f .deps/java_enum_field.Tpo .deps/java_enum_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_extension.lo -MD -MP -MF .deps/java_extension.Tpo -c -o java_extension.lo 
`test -f 'google/protobuf/compiler/java/java_extension.cc' || echo 
'./'`google/protobuf/compiler/java/java_extension.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_extension.lo -MD -MP -MF .deps/java_extension.Tpo 
-c google/protobuf/compiler/java/java_extension.cc  -fPIC -DPIC -o 
.libs/java_extension.o
In file included from google/protobuf/compiler/java/java_extension.cc:38:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_extension.lo -MD -MP -MF .deps/java_extension.Tpo 
-c google/protobuf/compiler/java/java_extension.cc -o java_extension.o 
>/dev/null 2>&1
mv -f .deps/java_extension.Tpo .deps/java_extension.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_field.lo -MD -MP -MF .deps/java_field.Tpo -c -o java_field.lo `test -f 
'google/protobuf/compiler/java/java_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_field.lo -MD -MP -MF .deps/java_field.Tpo -c 
google/protobuf/compiler/java/java_field.cc  -fPIC -DPIC -o .libs/java_field.o
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_field.lo -MD -MP -MF .deps/java_field.Tpo -c 
google/protobuf/compiler/java/java_field.cc -o java_field.o >/dev/null 2>&1
mv -f .deps/java_field.Tpo .deps/java_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_file.lo -MD -MP -MF .deps/java_file.Tpo -c -o java_file.lo `test -f 
'google/protobuf/compiler/java/java_file.cc' || echo 
'./'`google/protobuf/compiler/java/java_file.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_file.lo -MD -MP -MF .deps/java_file.Tpo -c 
google/protobuf/compiler/java/java_file.cc  -fPIC -DPIC -o .libs/java_file.o
In file included from google/protobuf/compiler/java/java_file.cc:46:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_file.lo -MD -MP -MF .deps/java_file.Tpo -c 
google/protobuf/compiler/java/java_file.cc -o java_file.o >/dev/null 2>&1
mv -f .deps/java_file.Tpo .deps/java_file.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_generator.lo -MD -MP -MF .deps/java_generator.Tpo -c -o java_generator.lo 
`test -f 'google/protobuf/compiler/java/java_generator.cc' || echo 
'./'`google/protobuf/compiler/java/java_generator.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_generator.lo -MD -MP -MF .deps/java_generator.Tpo 
-c google/protobuf/compiler/java/java_generator.cc  -fPIC -DPIC -o 
.libs/java_generator.o
In file included from google/protobuf/compiler/java/java_generator.cc:41:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_generator.lo -MD -MP -MF .deps/java_generator.Tpo 
-c google/protobuf/compiler/java/java_generator.cc -o java_generator.o 
>/dev/null 2>&1
mv -f .deps/java_generator.Tpo .deps/java_generator.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo -c -o java_helpers.lo `test 
-f 'google/protobuf/compiler/java/java_helpers.cc' || echo 
'./'`google/protobuf/compiler/java/java_helpers.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo -c 
google/protobuf/compiler/java/java_helpers.cc  -fPIC -DPIC -o 
.libs/java_helpers.o
In file included from google/protobuf/compiler/java/java_helpers.cc:40:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_helpers.lo -MD -MP -MF .deps/java_helpers.Tpo -c 
google/protobuf/compiler/java/java_helpers.cc -o java_helpers.o >/dev/null 2>&1
mv -f .deps/java_helpers.Tpo .deps/java_helpers.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_message.lo -MD -MP -MF .deps/java_message.Tpo -c -o java_message.lo `test 
-f 'google/protobuf/compiler/java/java_message.cc' || echo 
'./'`google/protobuf/compiler/java/java_message.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo -c 
google/protobuf/compiler/java/java_message.cc  -fPIC -DPIC -o 
.libs/java_message.o
In file included from google/protobuf/compiler/java/java_message.cc:50:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_message.lo -MD -MP -MF .deps/java_message.Tpo -c 
google/protobuf/compiler/java/java_message.cc -o java_message.o >/dev/null 2>&1
mv -f .deps/java_message.Tpo .deps/java_message.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_message_field.lo -MD -MP -MF .deps/java_message_field.Tpo -c -o 
java_message_field.lo `test -f 
'google/protobuf/compiler/java/java_message_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_message_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF 
.deps/java_message_field.Tpo -c 
google/protobuf/compiler/java/java_message_field.cc  -fPIC -DPIC -o 
.libs/java_message_field.o
In file included from google/protobuf/compiler/java/java_message_field.cc:43:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_message_field.lo -MD -MP -MF 
.deps/java_message_field.Tpo -c 
google/protobuf/compiler/java/java_message_field.cc -o java_message_field.o 
>/dev/null 2>&1
mv -f .deps/java_message_field.Tpo .deps/java_message_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_primitive_field.lo -MD -MP -MF .deps/java_primitive_field.Tpo -c -o 
java_primitive_field.lo `test -f 
'google/protobuf/compiler/java/java_primitive_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_primitive_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF 
.deps/java_primitive_field.Tpo -c 
google/protobuf/compiler/java/java_primitive_field.cc  -fPIC -DPIC -o 
.libs/java_primitive_field.o
In file included from google/protobuf/compiler/java/java_primitive_field.cc:44:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_primitive_field.lo -MD -MP -MF 
.deps/java_primitive_field.Tpo -c 
google/protobuf/compiler/java/java_primitive_field.cc -o java_primitive_field.o 
>/dev/null 2>&1
mv -f .deps/java_primitive_field.Tpo .deps/java_primitive_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_service.lo -MD -MP -MF .deps/java_service.Tpo -c -o java_service.lo `test 
-f 'google/protobuf/compiler/java/java_service.cc' || echo 
'./'`google/protobuf/compiler/java/java_service.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c 
google/protobuf/compiler/java/java_service.cc  -fPIC -DPIC -o 
.libs/java_service.o
In file included from google/protobuf/compiler/java/java_service.cc:40:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_service.lo -MD -MP -MF .deps/java_service.Tpo -c 
google/protobuf/compiler/java/java_service.cc -o java_service.o >/dev/null 2>&1
mv -f .deps/java_service.Tpo .deps/java_service.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_string_field.lo -MD -MP -MF .deps/java_string_field.Tpo -c -o 
java_string_field.lo `test -f 
'google/protobuf/compiler/java/java_string_field.cc' || echo 
'./'`google/protobuf/compiler/java/java_string_field.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF 
.deps/java_string_field.Tpo -c 
google/protobuf/compiler/java/java_string_field.cc  -fPIC -DPIC -o 
.libs/java_string_field.o
In file included from google/protobuf/compiler/java/java_string_field.cc:45:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_string_field.lo -MD -MP -MF 
.deps/java_string_field.Tpo -c 
google/protobuf/compiler/java/java_string_field.cc -o java_string_field.o 
>/dev/null 2>&1
mv -f .deps/java_string_field.Tpo .deps/java_string_field.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
java_doc_comment.lo -MD -MP -MF .deps/java_doc_comment.Tpo -c -o 
java_doc_comment.lo `test -f 
'google/protobuf/compiler/java/java_doc_comment.cc' || echo 
'./'`google/protobuf/compiler/java/java_doc_comment.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF 
.deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc 
 -fPIC -DPIC -o .libs/java_doc_comment.o
In file included from google/protobuf/compiler/java/java_doc_comment.cc:40:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT java_doc_comment.lo -MD -MP -MF 
.deps/java_doc_comment.Tpo -c google/protobuf/compiler/java/java_doc_comment.cc 
-o java_doc_comment.o >/dev/null 2>&1
mv -f .deps/java_doc_comment.Tpo .deps/java_doc_comment.Plo
/bin/sh ../libtool  --tag=CXX   --mode=compile /nxb-bin/usr/bin/c++ 
-DHAVE_CONFIG_H -I. -I..    -D_THREAD_SAFE -pthread -Wall -Wwrite-strings 
-Woverloaded-virtual -Wno-sign-compare  -O2 -pipe -fno-strict-aliasing   -MT 
python_generator.lo -MD -MP -MF .deps/python_generator.Tpo -c -o 
python_generator.lo `test -f 
'google/protobuf/compiler/python/python_generator.cc' || echo 
'./'`google/protobuf/compiler/python/python_generator.cc
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT python_generator.lo -MD -MP -MF 
.deps/python_generator.Tpo -c 
google/protobuf/compiler/python/python_generator.cc  -fPIC -DPIC -o 
.libs/python_generator.o
In file included from google/protobuf/compiler/python/python_generator.cc:59:
./google/protobuf/stubs/strutil.h:319:25: warning: unused typedef 
'sizeof_int64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_int64_is_not_sizeof_long_long);
                        ^
./google/protobuf/stubs/strutil.h:325:25: warning: unused typedef 
'sizeof_uint64_is_not_sizeof_long_long' [-Wunused-local-typedef]
                        sizeof_uint64_is_not_sizeof_long_long);
                        ^
2 warnings generated.
libtool: compile:  /nxb-bin/usr/bin/c++ -DHAVE_CONFIG_H -I. -I.. -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -MT python_generator.lo -MD -MP -MF 
.deps/python_generator.Tpo -c 
google/protobuf/compiler/python/python_generator.cc -o python_generator.o 
>/dev/null 2>&1
mv -f .deps/python_generator.Tpo .deps/python_generator.Plo
/bin/sh ../libtool --tag=CXX   --mode=link /nxb-bin/usr/bin/c++ -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare  -O2 
-pipe -fno-strict-aliasing   -version-info 8:0:0 -export-dynamic -no-undefined  
-o libprotoc.la -rpath 
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib
 code_generator.lo command_line_interface.lo plugin.lo plugin.pb.lo 
subprocess.lo zip_writer.lo cpp_enum.lo cpp_enum_field.lo cpp_extension.lo 
cpp_field.lo cpp_file.lo cpp_generator.lo cpp_helpers.lo cpp_message.lo 
cpp_message_field.lo cpp_primitive_field.lo cpp_service.lo cpp_string_field.lo 
java_enum.lo java_enum_field.lo java_extension.lo java_field.lo java_file.lo 
java_generator.lo java_helpers.lo java_message.lo java_message_field.lo 
java_primitive_field.lo java_service.lo java_string_field.lo 
java_doc_comment.lo python_generator.lo -lpthread libprotobuf.la -lz 
libtool: link: /nxb-bin/usr/bin/c++  -fPIC -DPIC -shared -nostdlib 
/usr/lib/crti.o /usr/lib/crtbeginS.o  .libs/code_generator.o 
.libs/command_line_interface.o .libs/plugin.o .libs/plugin.pb.o 
.libs/subprocess.o .libs/zip_writer.o .libs/cpp_enum.o .libs/cpp_enum_field.o 
.libs/cpp_extension.o .libs/cpp_field.o .libs/cpp_file.o .libs/cpp_generator.o 
.libs/cpp_helpers.o .libs/cpp_message.o .libs/cpp_message_field.o 
.libs/cpp_primitive_field.o .libs/cpp_service.o .libs/cpp_string_field.o 
.libs/java_enum.o .libs/java_enum_field.o .libs/java_extension.o 
.libs/java_field.o .libs/java_file.o .libs/java_generator.o 
.libs/java_helpers.o .libs/java_message.o .libs/java_message_field.o 
.libs/java_primitive_field.o .libs/java_service.o .libs/java_string_field.o 
.libs/java_doc_comment.o .libs/python_generator.o   -Wl,-rpath 
-Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/src/.libs
 -Wl,-rpath 
-Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/proto
 buf/../build/lib -lpthread ./.libs/libprotobuf.so -lz -L/usr/lib -lc++ -lm -lc 
-lgcc -lgcc_s /usr/lib/crtendS.o /usr/lib/crtn.o  -pthread -O2   -pthread 
-Wl,-soname -Wl,libprotoc.so.8 -o .libs/libprotoc.so.8.0.0
c++: warning: argument unused during compilation: '-pthread' 
[-Wunused-command-line-argument]
c++: warning: argument unused during compilation: '-pthread' 
[-Wunused-command-line-argument]
libtool: link: (cd ".libs" && rm -f "libprotoc.so.8" && ln -s 
"libprotoc.so.8.0.0" "libprotoc.so.8")
libtool: link: (cd ".libs" && rm -f "libprotoc.so" && ln -s 
"libprotoc.so.8.0.0" "libprotoc.so")
libtool: link: ar cru .libs/libprotoc.a  code_generator.o 
command_line_interface.o plugin.o plugin.pb.o subprocess.o zip_writer.o 
cpp_enum.o cpp_enum_field.o cpp_extension.o cpp_field.o cpp_file.o 
cpp_generator.o cpp_helpers.o cpp_message.o cpp_message_field.o 
cpp_primitive_field.o cpp_service.o cpp_string_field.o java_enum.o 
java_enum_field.o java_extension.o java_field.o java_file.o java_generator.o 
java_helpers.o java_message.o java_message_field.o java_primitive_field.o 
java_service.o java_string_field.o java_doc_comment.o python_generator.o
libtool: link: ranlib .libs/libprotoc.a
libtool: link: ( cd ".libs" && rm -f "libprotoc.la" && ln -s "../libprotoc.la" 
"libprotoc.la" )
/bin/sh ../libtool --tag=CXX   --mode=link /nxb-bin/usr/bin/c++ -D_THREAD_SAFE 
-pthread -Wall -Wwrite-strings -Woverloaded-virtual -Wno-sign-compare  -O2 
-pipe -fno-strict-aliasing   -D_THREAD_SAFE -pthread  -o protoc main.o 
-lpthread libprotobuf.la libprotoc.la -lz 
libtool: link: /nxb-bin/usr/bin/c++ -D_THREAD_SAFE -pthread -Wall 
-Wwrite-strings -Woverloaded-virtual -Wno-sign-compare -O2 -pipe 
-fno-strict-aliasing -D_THREAD_SAFE -pthread -o .libs/protoc main.o  -lpthread 
./.libs/libprotobuf.so ./.libs/libprotoc.so -lz -pthread -Wl,-rpath 
-Wl,/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf/../build/lib
oldpwd=`pwd` && ( cd . && $oldpwd/protoc -I. --cpp_out=$oldpwd 
google/protobuf/unittest.proto google/protobuf/unittest_empty.proto 
google/protobuf/unittest_import.proto 
google/protobuf/unittest_import_public.proto 
google/protobuf/unittest_mset.proto google/protobuf/unittest_optimize_for.proto 
google/protobuf/unittest_embed_optimize_for.proto 
google/protobuf/unittest_custom_options.proto 
google/protobuf/unittest_lite.proto google/protobuf/unittest_import_lite.proto 
google/protobuf/unittest_import_public_lite.proto 
google/protobuf/unittest_lite_imports_nonlite.proto 
google/protobuf/unittest_no_generic_services.proto 
google/protobuf/compiler/cpp/cpp_test_bad_identifiers.proto )
qemu: unhandled CPU exception 0x9 - aborting
R00=ffff0fa0 R01=0009e17c R02=f4f9d801 R03=00000001
R04=00001027 R05=f4f9d9b4 R06=00000000 R07=f4ffb400
R08=f4fc57b4 R09=f4ffc3b0 R10=9fffd2e0 R11=9fffd280
R12=f4f29c98 R13=9fffd248 R14=f4f29cc4 R15=ffff0fa0
PSR=60000010 -ZC- A usr32
gmake[6]: *** [Makefile:3114: unittest_proto_middleman] Segmentation fault 
(core dumped)
gmake[6]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0/src'
gmake[5]: *** [Makefile:568: all-recursive] Error 1
gmake[5]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0'
gmake[4]: *** [Makefile:477: all] Error 2
gmake[4]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext/protobuf-2.5.0'
gmake[3]: *** [Makefile:5: build/lib/libprotobuf.a] Error 2
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/ext'
gmake[2]: *** [Makefile:170: sources/ext] Error 2
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
gmake[1]: *** [Makefile:165: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/plinkseq
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