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Please investigate the failure and submit a PR to fix
build.

Maintainer:     skreu...@freebsd.org
Last committer: d...@freebsd.org
Ident:          $FreeBSD: head/graphics/R-cran-GDD/Makefile 443845 2017-06-18 
18:09:16Z dbn $
Log URL:        
http://beefy11.nyi.freebsd.org/data/head-i386-default/p447526_s322210/logs/R-cran-GDD-0.1.13.1_11.log
Build URL:      
http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p447526_s322210
Log:

====>> Building graphics/R-cran-GDD
build started at Wed Aug  9 01:43:57 UTC 2017
port directory: /usr/ports/graphics/R-cran-GDD
building for: FreeBSD head-i386-default-job-06 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 i386
maintained by: skreu...@freebsd.org
Makefile ident:      $FreeBSD: head/graphics/R-cran-GDD/Makefile 443845 
2017-06-18 18:09:16Z dbn $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 06




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=R-cran-GDD-0.1.13.1_11
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
MASTERNAME=head-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" 
FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" 
XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work  
HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" 
FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" 
XDG_DATA_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work  
HOME=/wrkdirs/usr/ports/graphics/R-cran-GDD/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 -pipe  
-fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  LDFLAGS=" 
-Wl,-rpath=/usr/local/lib/gcc5  -L/usr/local/lib/gcc5 -B/usr/local/bin 
-fstack-pro
 tector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
R_MOD_DIR=lib/R/library/GDD
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/GDD"
EXAMPLESDIR="share/examples/GDD"
DATADIR="share/GDD"
WWWDIR="www/GDD"
ETCDIR="etc/GDD"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/GDD
DOCSDIR=/usr/local/share/doc/GDD
EXAMPLESDIR=/usr/local/share/examples/GDD
WWWDIR=/usr/local/www/GDD
ETCDIR=/usr/local/etc/GDD
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=i386
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200040
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[head-i386-default-job-06] Installing pkg-1.10.1...
[head-i386-default-job-06] Extracting pkg-1.10.1: .......... done
===>   R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of R-cran-GDD-0.1.13.1_11
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-GDD-0.1.13.1_11 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-GDD-0.1.13.1_11 for building
=> SHA256 Checksum OK for GDD_0.1-13.1.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by R-cran-GDD-0.1.13.1_11 for building
===>  Extracting for R-cran-GDD-0.1.13.1_11
=> SHA256 Checksum OK for GDD_0.1-13.1.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for R-cran-GDD-0.1.13.1_11
===>  Applying FreeBSD patches for R-cran-GDD-0.1.13.1_11
===========================================================================
=======================<phase: build-depends  >============================
===>   R-cran-GDD-0.1.13.1_11 depends on package: libgd>=2.0.35_8,1 - not found
===>   Installing existing package /packages/All/libgd-2.2.4_1,1.txz
[head-i386-default-job-06] Installing libgd-2.2.4_1,1...
[head-i386-default-job-06] `-- Installing fontconfig-2.12.1,1...
[head-i386-default-job-06] |   `-- Installing expat-2.2.1...
[head-i386-default-job-06] |   `-- Extracting expat-2.2.1: .......... done
[head-i386-default-job-06] |   `-- Installing freetype2-2.8...
[head-i386-default-job-06] |   `-- Extracting freetype2-2.8: .......... done
[head-i386-default-job-06] `-- Extracting fontconfig-2.12.1,1: .......... done
Running fc-cache to build fontconfig cache...
/usr/local/share/fonts: skipping, no such directory
/usr/local/lib/X11/fonts: skipping, no such directory
/var/db/fontconfig: cleaning cache directory
fc-cache: succeeded
[head-i386-default-job-06] `-- Installing jpeg-turbo-1.5.2...
<snip>
[head-i386-default-job-06] `-- Installing wget-1.19.1_1...
[head-i386-default-job-06] `-- Extracting wget-1.19.1_1: .......... done
[head-i386-default-job-06] Extracting R-3.4.1_4: .......... done
Message from perl5-5.24.2:
The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
Message from python27-2.7.13_7:
===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
Message from ca_root_nss-3.32:
********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
Message from gcc5-5.4.0_3:
To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc5

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from trousers-0.3.14_1:
To run tcsd automatically, add the following line to /etc/rc.conf:

tcsd_enable="YES"

You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.

If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:

tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
Message from ghostscript9-agpl-base-9.16_5:
Note: in order to use the script "dvipdf", dvips must be installed.
This program is provided by another package print/tex-dvipsk.

FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init
have to be configured if you want to use FAPI feature.
Message from dejavu-2.37:
Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

        Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

        FontPath "/usr/local/share/fonts/dejavu/"

Note: your X Windows configuration file is typically /etc/X11/XF86Config
if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org.
Message from R-3.4.1_4:
========================================================================
On 11.1 and later, there is a problem downloading R packages when
gfortran is chosen as the fortran compiler.

Use either of these workarounds until a permanent solution is found.

1. If you are on an amd64 system, you can use flang as the fortran
   compiler.

2. If you choose gfortran as the fortran compiler, you can add

   options(download.file.method="wget")

   to ~/.Rprofile followed by a newline.

Details: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=221127
========================================================================
===>   R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/bin/R - found
===>   Returning to build of R-cran-GDD-0.1.13.1_11
===>   R-cran-GDD-0.1.13.1_11 depends on executable: gfortran5 - found
===>   R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/bin/as - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for R-cran-GDD-0.1.13.1_11
===========================================================================
=======================<phase: build          >============================
===========================================================================
=======================<phase: run-depends    >============================
===>   R-cran-GDD-0.1.13.1_11 depends on package: libgd>=2.0.35_8,1 - found
===>   R-cran-GDD-0.1.13.1_11 depends on file: /usr/local/bin/R - found
===>   R-cran-GDD-0.1.13.1_11 depends on executable: gfortran5 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for R-cran-GDD-0.1.13.1_11
===>   Generating temporary packing list
* installing *source* package 'GDD' ...
file 'src/Makevars.in' has the wrong MD5 checksum
checking for gcc... cc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking how to run the C preprocessor... cpp
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for string.h... (cached) yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking for an ANSI C-conforming const... yes
checking whether time.h and sys/time.h may both be included... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking return type of signal handlers... void
checking for memset... yes
checking for mkdir... yes
checking for rmdir... yes
checking for gdlib-config... /usr/local/bin/gdlib-config
gdlib-config: warning: this script is deprecated; please use the pkg-config 
file instead.
gdlib-config: warning: this script is deprecated; please use the pkg-config 
file instead.
gdlib-config: warning: this script is deprecated; please use the pkg-config 
file instead.
gdlib-config: warning: this script is deprecated; please use the pkg-config 
file instead.
gdlib-config: warning: this script is deprecated; please use the pkg-config 
file instead.
libgd-flags according to gdlib-config:
   -I/usr/local/include -L/usr/local/lib -fstack-protector -lgd -lm -lz 
-L/usr/local/lib -lpng16 -lz -L/usr/local/lib -lfreetype -L/usr/local/lib 
-lfontconfig -lfreetype -ljpeg -L/usr/local/lib -ltiff -lwebp
if that is not correct, fix your gd installation
checking gd.h usability... yes
checking gd.h presence... yes
checking for gd.h... yes
checking for gdImageCreateFromPng in -lgd... yes
checking usability of FreeType in GD... yes
checking whether GD programs can be compiled... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/gddconfig.h
** libs
gmake[1]: Entering directory 
'/wrkdirs/usr/ports/graphics/R-cran-GDD/work/GDD/src'
Makevars:2: *** missing separator.  Stop.
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/graphics/R-cran-GDD/work/GDD/src'
ERROR: compilation failed for package 'GDD'
* removing 
'/wrkdirs/usr/ports/graphics/R-cran-GDD/work/stage/usr/local/lib/R/library/GDD'
*** Error code 1

Stop.
make: stopped in /usr/ports/graphics/R-cran-GDD
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