You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     dan...@freebsd.org
Last committer: lini...@freebsd.org
Ident:          $FreeBSD: branches/2017Q3/biology/iolib/Makefile 440746 
2017-05-13 03:35:51Z linimon $
Log URL:        
http://beefy16.nyi.freebsd.org/data/110mips64-quarterly/447639/logs/io_lib-1.14.9.log
Build URL:      
http://beefy16.nyi.freebsd.org/build.html?mastername=110mips64-quarterly&build=447639
Log:

====>> Building biology/iolib
build started at Thu Aug 10 01:18:08 UTC 2017
port directory: /usr/ports/biology/iolib
building for: FreeBSD 110mips64-quarterly-job-15 11.0-RELEASE-p11 FreeBSD 
11.0-RELEASE-p11 1100122 mips
maintained by: dan...@freebsd.org
Makefile ident:      $FreeBSD: branches/2017Q3/biology/iolib/Makefile 440746 
2017-05-13 03:35:51Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1100122
Job Id: 15

---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips64
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1100122
UNAME_v=FreeBSD 11.0-RELEASE-p11 1100122
UNAME_r=11.0-RELEASE-p11
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/110mips64-quarterly/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=io_lib-1.14.9
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/110mips64-quarterly/ref/.p/pool
MASTERNAME=110mips64-quarterly
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work  
HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/iolib/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/iolib/work  
HOME=/wrkdirs/usr/ports/biology/iolib/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0  -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=11.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
DOCSDIR="share/doc/io_lib"
EXAMPLESDIR="share/examples/io_lib"
DATADIR="share/io_lib"
WWWDIR="www/io_lib"
ETCDIR="etc/io_lib"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/io_lib
DOCSDIR=/usr/local/share/doc/io_lib
EXAMPLESDIR=/usr/local/share/examples/io_lib
WWWDIR=/usr/local/www/io_lib
ETCDIR=/usr/local/etc/io_lib
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=mips
MACHINE_ARCH=mips64
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=mips64
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.0
OSVERSION=1100122
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native\|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun
_JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+
_OSRELEASE=11.0-RELEASE-p11
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  131072
stack size              (kbytes, -s)  8192
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[110mips64-quarterly-job-15] Installing pkg-1.10.1...
[110mips64-quarterly-job-15] Extracting pkg-1.10.1: .......... done
===>   io_lib-1.14.9 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of io_lib-1.14.9
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by io_lib-1.14.9 for building
===>  Extracting for io_lib-1.14.9
=> SHA256 Checksum OK for jkbonfield-io_lib-io_lib-1-14-9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for io_lib-1.14.9
===>  Applying FreeBSD patches for io_lib-1.14.9
===========================================================================
=======================<phase: build-depends  >============================
===>   io_lib-1.14.9 depends on executable: autoconf-2.69 - not found
===>   Installing existing package /packages/All/autoconf-2.69_1.txz
[110mips64-quarterly-job-15] Installing autoconf-2.69_1...
[110mips64-quarterly-job-15] `-- Installing autoconf-wrapper-20131203...
<snip>
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo 
-c misc_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-misc_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-misc_scf.lo -MD -MP -MF .deps/libstaden_read_la-misc_scf.Tpo 
-c misc_scf.c -o libstaden_read_la-misc_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-misc_scf.Tpo .deps/libstaden_read_la-misc_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-read_scf.lo -MD -MP -MF 
.deps/libstaden_read_la-read_scf.Tpo -c -o libstaden_read_la-read_scf.lo `test 
-f 'read_scf.c' || echo './'`read_scf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo 
-c read_scf.c  -fPIC -DPIC -o .libs/libstaden_read_la-read_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-read_scf.lo -MD -MP -MF .deps/libstaden_read_la-read_scf.Tpo 
-c read_scf.c -o libstaden_read_la-read_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-read_scf.Tpo .deps/libstaden_read_la-read_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-write_scf.lo -MD -MP -MF 
.deps/libstaden_read_la-write_scf.Tpo -c -o libstaden_read_la-write_scf.lo 
`test -f 'write_scf.c' || echo './'`write_scf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-write_scf.lo -MD -MP -MF 
.deps/libstaden_read_la-write_scf.Tpo -c write_scf.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-write_scf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-write_scf.lo -MD -MP -MF 
.deps/libstaden_read_la-write_scf.Tpo -c write_scf.c -o 
libstaden_read_la-write_scf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-write_scf.Tpo 
.deps/libstaden_read_la-write_scf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-sff.lo -MD -MP -MF 
.deps/libstaden_read_la-sff.Tpo -c -o libstaden_read_la-sff.lo `test -f 'sff.c' 
|| echo './'`sff.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c  
-fPIC -DPIC -o .libs/libstaden_read_la-sff.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-sff.lo -MD -MP -MF .deps/libstaden_read_la-sff.Tpo -c sff.c 
-o libstaden_read_la-sff.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-sff.Tpo .deps/libstaden_read_la-sff.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-srf.lo -MD -MP -MF 
.deps/libstaden_read_la-srf.Tpo -c -o libstaden_read_la-srf.lo `test -f 'srf.c' 
|| echo './'`srf.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c  
-fPIC -DPIC -o .libs/libstaden_read_la-srf.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-srf.lo -MD -MP -MF .deps/libstaden_read_la-srf.Tpo -c srf.c 
-o libstaden_read_la-srf.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-srf.Tpo .deps/libstaden_read_la-srf.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-array.lo -MD -MP -MF 
.deps/libstaden_read_la-array.Tpo -c -o libstaden_read_la-array.lo `test -f 
'array.c' || echo './'`array.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c 
array.c  -fPIC -DPIC -o .libs/libstaden_read_la-array.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-array.lo -MD -MP -MF .deps/libstaden_read_la-array.Tpo -c 
array.c -o libstaden_read_la-array.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-array.Tpo .deps/libstaden_read_la-array.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-compress.lo -MD -MP -MF 
.deps/libstaden_read_la-compress.Tpo -c -o libstaden_read_la-compress.lo `test 
-f 'compress.c' || echo './'`compress.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo 
-c compress.c  -fPIC -DPIC -o .libs/libstaden_read_la-compress.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-compress.lo -MD -MP -MF .deps/libstaden_read_la-compress.Tpo 
-c compress.c -o libstaden_read_la-compress.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-compress.Tpo .deps/libstaden_read_la-compress.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-error.lo -MD -MP -MF 
.deps/libstaden_read_la-error.Tpo -c -o libstaden_read_la-error.lo `test -f 
'error.c' || echo './'`error.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c 
error.c  -fPIC -DPIC -o .libs/libstaden_read_la-error.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-error.lo -MD -MP -MF .deps/libstaden_read_la-error.Tpo -c 
error.c -o libstaden_read_la-error.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-error.Tpo .deps/libstaden_read_la-error.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-files.lo -MD -MP -MF 
.deps/libstaden_read_la-files.Tpo -c -o libstaden_read_la-files.lo `test -f 
'files.c' || echo './'`files.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c 
files.c  -fPIC -DPIC -o .libs/libstaden_read_la-files.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-files.lo -MD -MP -MF .deps/libstaden_read_la-files.Tpo -c 
files.c -o libstaden_read_la-files.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-files.Tpo .deps/libstaden_read_la-files.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-find.lo -MD -MP -MF 
.deps/libstaden_read_la-find.Tpo -c -o libstaden_read_la-find.lo `test -f 
'find.c' || echo './'`find.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c 
find.c  -fPIC -DPIC -o .libs/libstaden_read_la-find.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-find.lo -MD -MP -MF .deps/libstaden_read_la-find.Tpo -c 
find.c -o libstaden_read_la-find.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-find.Tpo .deps/libstaden_read_la-find.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-mach-io.lo -MD -MP -MF 
.deps/libstaden_read_la-mach-io.Tpo -c -o libstaden_read_la-mach-io.lo `test -f 
'mach-io.c' || echo './'`mach-io.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c 
mach-io.c  -fPIC -DPIC -o .libs/libstaden_read_la-mach-io.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-mach-io.lo -MD -MP -MF .deps/libstaden_read_la-mach-io.Tpo -c 
mach-io.c -o libstaden_read_la-mach-io.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-mach-io.Tpo .deps/libstaden_read_la-mach-io.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-open_trace_file.lo -MD -MP -MF 
.deps/libstaden_read_la-open_trace_file.Tpo -c -o 
libstaden_read_la-open_trace_file.lo `test -f 'open_trace_file.c' || echo 
'./'`open_trace_file.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-open_trace_file.lo -MD -MP -MF 
.deps/libstaden_read_la-open_trace_file.Tpo -c open_trace_file.c  -fPIC -DPIC 
-o .libs/libstaden_read_la-open_trace_file.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-open_trace_file.lo -MD -MP -MF 
.deps/libstaden_read_la-open_trace_file.Tpo -c open_trace_file.c -o 
libstaden_read_la-open_trace_file.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-open_trace_file.Tpo 
.deps/libstaden_read_la-open_trace_file.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-read_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-read_alloc.Tpo -c -o libstaden_read_la-read_alloc.lo 
`test -f 'read_alloc.c' || echo './'`read_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-read_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-read_alloc.Tpo -c read_alloc.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-read_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-read_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-read_alloc.Tpo -c read_alloc.c -o 
libstaden_read_la-read_alloc.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-read_alloc.Tpo 
.deps/libstaden_read_la-read_alloc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-strings.lo -MD -MP -MF 
.deps/libstaden_read_la-strings.Tpo -c -o libstaden_read_la-strings.lo `test -f 
'strings.c' || echo './'`strings.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c 
strings.c  -fPIC -DPIC -o .libs/libstaden_read_la-strings.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-strings.lo -MD -MP -MF .deps/libstaden_read_la-strings.Tpo -c 
strings.c -o libstaden_read_la-strings.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-strings.Tpo .deps/libstaden_read_la-strings.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-traceType.lo -MD -MP -MF 
.deps/libstaden_read_la-traceType.Tpo -c -o libstaden_read_la-traceType.lo 
`test -f 'traceType.c' || echo './'`traceType.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-traceType.lo -MD -MP -MF 
.deps/libstaden_read_la-traceType.Tpo -c traceType.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-traceType.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-traceType.lo -MD -MP -MF 
.deps/libstaden_read_la-traceType.Tpo -c traceType.c -o 
libstaden_read_la-traceType.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-traceType.Tpo 
.deps/libstaden_read_la-traceType.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-xalloc.lo -MD -MP -MF 
.deps/libstaden_read_la-xalloc.Tpo -c -o libstaden_read_la-xalloc.lo `test -f 
'xalloc.c' || echo './'`xalloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c 
xalloc.c  -fPIC -DPIC -o .libs/libstaden_read_la-xalloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-xalloc.lo -MD -MP -MF .deps/libstaden_read_la-xalloc.Tpo -c 
xalloc.c -o libstaden_read_la-xalloc.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-xalloc.Tpo .deps/libstaden_read_la-xalloc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-vlen.lo -MD -MP -MF 
.deps/libstaden_read_la-vlen.Tpo -c -o libstaden_read_la-vlen.lo `test -f 
'vlen.c' || echo './'`vlen.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c 
vlen.c  -fPIC -DPIC -o .libs/libstaden_read_la-vlen.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-vlen.lo -MD -MP -MF .deps/libstaden_read_la-vlen.Tpo -c 
vlen.c -o libstaden_read_la-vlen.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-vlen.Tpo .deps/libstaden_read_la-vlen.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-hash_table.lo -MD -MP -MF 
.deps/libstaden_read_la-hash_table.Tpo -c -o libstaden_read_la-hash_table.lo 
`test -f 'hash_table.c' || echo './'`hash_table.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-hash_table.lo -MD -MP -MF 
.deps/libstaden_read_la-hash_table.Tpo -c hash_table.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-hash_table.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-hash_table.lo -MD -MP -MF 
.deps/libstaden_read_la-hash_table.Tpo -c hash_table.c -o 
libstaden_read_la-hash_table.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-hash_table.Tpo 
.deps/libstaden_read_la-hash_table.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF 
.deps/libstaden_read_la-jenkins_lookup3.Tpo -c -o 
libstaden_read_la-jenkins_lookup3.lo `test -f 'jenkins_lookup3.c' || echo 
'./'`jenkins_lookup3.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF 
.deps/libstaden_read_la-jenkins_lookup3.Tpo -c jenkins_lookup3.c  -fPIC -DPIC 
-o .libs/libstaden_read_la-jenkins_lookup3.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-jenkins_lookup3.lo -MD -MP -MF 
.deps/libstaden_read_la-jenkins_lookup3.Tpo -c jenkins_lookup3.c -o 
libstaden_read_la-jenkins_lookup3.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-jenkins_lookup3.Tpo 
.deps/libstaden_read_la-jenkins_lookup3.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-mFILE.lo -MD -MP -MF 
.deps/libstaden_read_la-mFILE.Tpo -c -o libstaden_read_la-mFILE.lo `test -f 
'mFILE.c' || echo './'`mFILE.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c 
mFILE.c  -fPIC -DPIC -o .libs/libstaden_read_la-mFILE.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-mFILE.lo -MD -MP -MF .deps/libstaden_read_la-mFILE.Tpo -c 
mFILE.c -o libstaden_read_la-mFILE.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-mFILE.Tpo .deps/libstaden_read_la-mFILE.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-pooled_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-pooled_alloc.Tpo -c -o 
libstaden_read_la-pooled_alloc.lo `test -f 'pooled_alloc.c' || echo 
'./'`pooled_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-pooled_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-pooled_alloc.Tpo -c pooled_alloc.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-pooled_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-pooled_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-pooled_alloc.Tpo -c pooled_alloc.c -o 
libstaden_read_la-pooled_alloc.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-pooled_alloc.Tpo 
.deps/libstaden_read_la-pooled_alloc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-bam.lo -MD -MP -MF 
.deps/libstaden_read_la-bam.Tpo -c -o libstaden_read_la-bam.lo `test -f 'bam.c' 
|| echo './'`bam.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c bam.c  
-fPIC -DPIC -o .libs/libstaden_read_la-bam.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-bam.lo -MD -MP -MF .deps/libstaden_read_la-bam.Tpo -c bam.c 
-o libstaden_read_la-bam.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-bam.Tpo .deps/libstaden_read_la-bam.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-sam_header.lo -MD -MP -MF 
.deps/libstaden_read_la-sam_header.Tpo -c -o libstaden_read_la-sam_header.lo 
`test -f 'sam_header.c' || echo './'`sam_header.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-sam_header.lo -MD -MP -MF 
.deps/libstaden_read_la-sam_header.Tpo -c sam_header.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-sam_header.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-sam_header.lo -MD -MP -MF 
.deps/libstaden_read_la-sam_header.Tpo -c sam_header.c -o 
libstaden_read_la-sam_header.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-sam_header.Tpo 
.deps/libstaden_read_la-sam_header.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-rANS_static.lo -MD -MP -MF 
.deps/libstaden_read_la-rANS_static.Tpo -c -o libstaden_read_la-rANS_static.lo 
`test -f 'rANS_static.c' || echo './'`rANS_static.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-rANS_static.lo -MD -MP -MF 
.deps/libstaden_read_la-rANS_static.Tpo -c rANS_static.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-rANS_static.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-rANS_static.lo -MD -MP -MF 
.deps/libstaden_read_la-rANS_static.Tpo -c rANS_static.c -o 
libstaden_read_la-rANS_static.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-rANS_static.Tpo 
.deps/libstaden_read_la-rANS_static.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_codecs.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_codecs.Tpo -c -o libstaden_read_la-cram_codecs.lo 
`test -f 'cram_codecs.c' || echo './'`cram_codecs.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_codecs.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_codecs.Tpo -c cram_codecs.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-cram_codecs.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_codecs.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_codecs.Tpo -c cram_codecs.c -o 
libstaden_read_la-cram_codecs.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_codecs.Tpo 
.deps/libstaden_read_la-cram_codecs.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_encode.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_encode.Tpo -c -o libstaden_read_la-cram_encode.lo 
`test -f 'cram_encode.c' || echo './'`cram_encode.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_encode.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_encode.Tpo -c cram_encode.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-cram_encode.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_encode.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_encode.Tpo -c cram_encode.c -o 
libstaden_read_la-cram_encode.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_encode.Tpo 
.deps/libstaden_read_la-cram_encode.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_decode.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_decode.Tpo -c -o libstaden_read_la-cram_decode.lo 
`test -f 'cram_decode.c' || echo './'`cram_decode.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_decode.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-cram_decode.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_decode.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_decode.Tpo -c cram_decode.c -o 
libstaden_read_la-cram_decode.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_decode.Tpo 
.deps/libstaden_read_la-cram_decode.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_stats.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_stats.Tpo -c -o libstaden_read_la-cram_stats.lo 
`test -f 'cram_stats.c' || echo './'`cram_stats.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_stats.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-cram_stats.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_stats.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_stats.Tpo -c cram_stats.c -o 
libstaden_read_la-cram_stats.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_stats.Tpo 
.deps/libstaden_read_la-cram_stats.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_io.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_io.Tpo -c -o libstaden_read_la-cram_io.lo `test -f 
'cram_io.c' || echo './'`cram_io.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c 
cram_io.c  -fPIC -DPIC -o .libs/libstaden_read_la-cram_io.o
cram_io.c: In function 'paranoid_fclose':
cram_io.c:2292: warning: implicit declaration of function 'fsync'
cram_io.c: In function 'cram_populate_ref':
cram_io.c:2903: warning: implicit declaration of function 'unlink'
cram_io.c: In function 'full_path':
cram_io.c:4288: warning: implicit declaration of function 'getcwd'
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_io.lo -MD -MP -MF .deps/libstaden_read_la-cram_io.Tpo -c 
cram_io.c -o libstaden_read_la-cram_io.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_io.Tpo .deps/libstaden_read_la-cram_io.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_index.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_index.Tpo -c -o libstaden_read_la-cram_index.lo 
`test -f 'cram_index.c' || echo './'`cram_index.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_index.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_index.Tpo -c cram_index.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-cram_index.o
cram_index.c: In function 'cram_index_load_private':
cram_index.c:183: warning: 'e.nseq' is used uninitialized in this function
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_index.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_index.Tpo -c cram_index.c -o 
libstaden_read_la-cram_index.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_index.Tpo 
.deps/libstaden_read_la-cram_index.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-zfio.lo -MD -MP -MF 
.deps/libstaden_read_la-zfio.Tpo -c -o libstaden_read_la-zfio.lo `test -f 
'zfio.c' || echo './'`zfio.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c 
zfio.c  -fPIC -DPIC -o .libs/libstaden_read_la-zfio.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-zfio.lo -MD -MP -MF .deps/libstaden_read_la-zfio.Tpo -c 
zfio.c -o libstaden_read_la-zfio.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-zfio.Tpo .deps/libstaden_read_la-zfio.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-dstring.lo -MD -MP -MF 
.deps/libstaden_read_la-dstring.Tpo -c -o libstaden_read_la-dstring.lo `test -f 
'dstring.c' || echo './'`dstring.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c 
dstring.c  -fPIC -DPIC -o .libs/libstaden_read_la-dstring.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-dstring.lo -MD -MP -MF .deps/libstaden_read_la-dstring.Tpo -c 
dstring.c -o libstaden_read_la-dstring.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-dstring.Tpo .deps/libstaden_read_la-dstring.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-string_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-string_alloc.Tpo -c -o 
libstaden_read_la-string_alloc.lo `test -f 'string_alloc.c' || echo 
'./'`string_alloc.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-string_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-string_alloc.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-string_alloc.lo -MD -MP -MF 
.deps/libstaden_read_la-string_alloc.Tpo -c string_alloc.c -o 
libstaden_read_la-string_alloc.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-string_alloc.Tpo 
.deps/libstaden_read_la-string_alloc.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-md5.lo -MD -MP -MF 
.deps/libstaden_read_la-md5.Tpo -c -o libstaden_read_la-md5.lo `test -f 'md5.c' 
|| echo './'`md5.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c  
-fPIC -DPIC -o .libs/libstaden_read_la-md5.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-md5.lo -MD -MP -MF .deps/libstaden_read_la-md5.Tpo -c md5.c 
-o libstaden_read_la-md5.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-md5.Tpo .deps/libstaden_read_la-md5.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-crc32.lo -MD -MP -MF 
.deps/libstaden_read_la-crc32.Tpo -c -o libstaden_read_la-crc32.lo `test -f 
'crc32.c' || echo './'`crc32.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c 
crc32.c  -fPIC -DPIC -o .libs/libstaden_read_la-crc32.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-crc32.lo -MD -MP -MF .deps/libstaden_read_la-crc32.Tpo -c 
crc32.c -o libstaden_read_la-crc32.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-crc32.Tpo .deps/libstaden_read_la-crc32.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-scram.lo -MD -MP -MF 
.deps/libstaden_read_la-scram.Tpo -c -o libstaden_read_la-scram.lo `test -f 
'scram.c' || echo './'`scram.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c 
scram.c  -fPIC -DPIC -o .libs/libstaden_read_la-scram.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-scram.lo -MD -MP -MF .deps/libstaden_read_la-scram.Tpo -c 
scram.c -o libstaden_read_la-scram.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-scram.Tpo .deps/libstaden_read_la-scram.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-thread_pool.lo -MD -MP -MF 
.deps/libstaden_read_la-thread_pool.Tpo -c -o libstaden_read_la-thread_pool.lo 
`test -f 'thread_pool.c' || echo './'`thread_pool.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-thread_pool.lo -MD -MP -MF 
.deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-thread_pool.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-thread_pool.lo -MD -MP -MF 
.deps/libstaden_read_la-thread_pool.Tpo -c thread_pool.c -o 
libstaden_read_la-thread_pool.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-thread_pool.Tpo 
.deps/libstaden_read_la-thread_pool.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-binning.lo -MD -MP -MF 
.deps/libstaden_read_la-binning.Tpo -c -o libstaden_read_la-binning.lo `test -f 
'binning.c' || echo './'`binning.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c 
binning.c  -fPIC -DPIC -o .libs/libstaden_read_la-binning.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-binning.lo -MD -MP -MF .deps/libstaden_read_la-binning.Tpo -c 
binning.c -o libstaden_read_la-binning.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-binning.Tpo .deps/libstaden_read_la-binning.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-cram_bambam.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_bambam.Tpo -c -o libstaden_read_la-cram_bambam.lo 
`test -f 'cram_bambam.c' || echo './'`cram_bambam.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_bambam.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c  -fPIC -DPIC -o 
.libs/libstaden_read_la-cram_bambam.o
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-cram_bambam.lo -MD -MP -MF 
.deps/libstaden_read_la-cram_bambam.Tpo -c cram_bambam.c -o 
libstaden_read_la-cram_bambam.o >/dev/null 2>&1
mv -f .deps/libstaden_read_la-cram_bambam.Tpo 
.deps/libstaden_read_la-cram_bambam.Plo
/bin/sh ../libtool  --tag=CC   --mode=compile /nxb-bin/usr/bin/cc 
-DHAVE_CONFIG_H -I. -I.. -I.. -I/usr/local/include   -Wall -O2 -pipe -G0  
-fno-strict-aliasing -MT libstaden_read_la-bgzip.lo -MD -MP -MF 
.deps/libstaden_read_la-bgzip.Tpo -c -o libstaden_read_la-bgzip.lo `test -f 
'bgzip.c' || echo './'`bgzip.c
libtool: compile:  /nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I. -I.. -I.. 
-I/usr/local/include -Wall -O2 -pipe -G0 -fno-strict-aliasing -MT 
libstaden_read_la-bgzip.lo -MD -MP -MF .deps/libstaden_read_la-bgzip.Tpo -c 
bgzip.c  -fPIC -DPIC -o .libs/libstaden_read_la-bgzip.o
bgzip.c: In function 'gzi_index_dump':
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:190: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long unsigned int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:193: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long unsigned int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long int')
bgzip.c:195: error: invalid operands to binary & (have 'uint64_t *' and 'long 
long unsigned int')
gmake[3]: *** [Makefile:1014: libstaden_read_la-bgzip.lo] Error 1
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9/io_lib'
gmake[2]: *** [Makefile:746: all-recursive] Error 1
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9'
gmake[1]: *** [Makefile:491: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/iolib/work/io_lib-io_lib-1-14-9'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/iolib
_______________________________________________
freebsd-pkg-fallout@freebsd.org mailing list
https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout
To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"

Reply via email to