You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     bacon4...@gmail.com
Last committer: lini...@freebsd.org
Ident:          $FreeBSD: head/biology/gmap/Makefile 440746 2017-05-13 
03:35:51Z linimon $
Log URL:        
http://beefy7.nyi.freebsd.org/data/head-mips-default/p447812_s322419/logs/gmap-2015.09.21.log
Build URL:      
http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p447812_s322419
Log:

====>> Building biology/gmap
build started at Sat Aug 12 07:33:42 UTC 2017
port directory: /usr/ports/biology/gmap
building for: FreeBSD head-mips-default-job-20 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200040 mips
maintained by: bacon4...@gmail.com
Makefile ident:      $FreeBSD: head/biology/gmap/Makefile 440746 2017-05-13 
03:35:51Z linimon $
Poudriere version: 3.1.19-61-ga8829ba9
Host OSVERSION: 1200033
Jail OSVERSION: 1200040
Job Id: 20




!!! Jail is newer than host. (Jail: 1200040, Host: 1200033) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=mips
UNAME_m=mips
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200040
UNAME_v=FreeBSD 12.0-CURRENT 1200040
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-mips-default/ref
QEMU_EMULATING=1
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNAME=gmap-2015.09.21
OLDPWD=/
PWD=/usr/local/poudriere/data/.m/head-mips-default/ref/.p/pool
MASTERNAME=head-mips-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
POUDRIERE_VERSION=3.1.19-61-ga8829ba9
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for gmap-2015.09.21:
     SIMD=off: Use CPU-specific optimizations
===> Use 'make config' to modify these settings
---End OPTIONS List---

--CONFIGURE_ARGS--
--disable-builtin-popcount --disable-simd --prefix=/usr/local 
${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gmap/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gmap/work  
HOME=/wrkdirs/usr/ports/biology/gmap/work TMPDIR="/tmp" SHELL=/bin/sh 
CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site 
lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/gmap/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/gmap/work  
HOME=/wrkdirs/usr/ports/biology/gmap/work TMPDIR="/tmp" NO_PIE=yes 
MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -EB -mabi=32 -msoft-float  
-fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" -EB 
-mabi=32" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -EB 
-mabi=32 -msoft-float -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
OSREL=12.0
PREFIX=%D
LOCALBASE=/usr/local
RESETPREFIX=/usr/local
PORTDOCS=""
PORTEXAMPLES=""
LIB32DIR=lib
PERL_VERSION=5.24.2
PERL_VER=5.24
PERL5_MAN1=lib/perl5/site_perl/man/man1
PERL5_MAN3=lib/perl5/site_perl/man/man3
SITE_PERL=lib/perl5/site_perl
SITE_ARCH=lib/perl5/site_perl/mach/5.24
DOCSDIR="share/doc/gmap"
EXAMPLESDIR="share/examples/gmap"
DATADIR="share/gmap"
WWWDIR="www/gmap"
ETCDIR="etc/gmap"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/gmap
DOCSDIR=/usr/local/share/doc/gmap
EXAMPLESDIR=/usr/local/share/examples/gmap
WWWDIR=/usr/local/www/gmap
ETCDIR=/usr/local/etc/gmap
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
MACHINE=mips
MACHINE_ARCH=mips
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=mips
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200040
PYTHONBASE=/usr/local
UID=0
_JAVA_OS_LIST_REGEXP=native|linux
_JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun
_JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
READELF=/nxb-bin/usr/bin/readelf
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  131072
stack size              (kbytes, -s)  8192
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GMAP accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.1.txz
[head-mips-default-job-20] Installing pkg-1.10.1...
[head-mips-default-job-20] Extracting pkg-1.10.1: .......... done
===>   gmap-2015.09.21 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of gmap-2015.09.21
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GMAP accepted by the user
===> Fetching all distfiles required by gmap-2015.09.21 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GMAP accepted by the user
===> Fetching all distfiles required by gmap-2015.09.21 for building
=> SHA256 Checksum OK for gmap-gsnap-2015-09-21.tar.gz.
===========================================================================
<snip>
mv -f .deps/gmapl-splicetrie_build.Tpo .deps/gmapl-splicetrie_build.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-splicetrie.o -MD -MP -MF .deps/gmapl-splicetrie.Tpo -c -o 
gmapl-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c
mv -f .deps/gmapl-splicetrie.Tpo .deps/gmapl-splicetrie.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-boyer-moore.o -MD -MP -MF .deps/gmapl-boyer-moore.Tpo -c -o 
gmapl-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c
mv -f .deps/gmapl-boyer-moore.Tpo .deps/gmapl-boyer-moore.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-dynprog.o -MD -MP -MF .deps/gmapl-dynprog.Tpo -c -o gmapl-dynprog.o 
`test -f 'dynprog.c' || echo './'`dynprog.c
mv -f .deps/gmapl-dynprog.Tpo .deps/gmapl-dynprog.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-dynprog_simd.o -MD -MP -MF .deps/gmapl-dynprog_simd.Tpo -c -o 
gmapl-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c
mv -f .deps/gmapl-dynprog_simd.Tpo .deps/gmapl-dynprog_simd.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-dynprog_single.o -MD -MP -MF .deps/gmapl-dynprog_single.Tpo -c -o 
gmapl-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c
mv -f .deps/gmapl-dynprog_single.Tpo .deps/gmapl-dynprog_single.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-dynprog_genome.o -MD -MP -MF .deps/gmapl-dynprog_genome.Tpo -c -o 
gmapl-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c
mv -f .deps/gmapl-dynprog_genome.Tpo .deps/gmapl-dynprog_genome.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-dynprog_cdna.o -MD -MP -MF .deps/gmapl-dynprog_cdna.Tpo -c -o 
gmapl-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c
mv -f .deps/gmapl-dynprog_cdna.Tpo .deps/gmapl-dynprog_cdna.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-dynprog_end.o -MD -MP -MF .deps/gmapl-dynprog_end.Tpo -c -o 
gmapl-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c
mv -f .deps/gmapl-dynprog_end.Tpo .deps/gmapl-dynprog_end.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-translation.o -MD -MP -MF .deps/gmapl-translation.Tpo -c -o 
gmapl-translation.o `test -f 'translation.c' || echo './'`translation.c
mv -f .deps/gmapl-translation.Tpo .deps/gmapl-translation.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-pbinom.o -MD -MP -MF .deps/gmapl-pbinom.Tpo -c -o gmapl-pbinom.o 
`test -f 'pbinom.c' || echo './'`pbinom.c
mv -f .deps/gmapl-pbinom.Tpo .deps/gmapl-pbinom.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-changepoint.o -MD -MP -MF .deps/gmapl-changepoint.Tpo -c -o 
gmapl-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c
mv -f .deps/gmapl-changepoint.Tpo .deps/gmapl-changepoint.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-stage3.o -MD -MP -MF .deps/gmapl-stage3.Tpo -c -o gmapl-stage3.o 
`test -f 'stage3.c' || echo './'`stage3.c
mv -f .deps/gmapl-stage3.Tpo .deps/gmapl-stage3.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-request.o -MD -MP -MF .deps/gmapl-request.Tpo -c -o gmapl-request.o 
`test -f 'request.c' || echo './'`request.c
mv -f .deps/gmapl-request.Tpo .deps/gmapl-request.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-result.o -MD -MP -MF .deps/gmapl-result.Tpo -c -o gmapl-result.o 
`test -f 'result.c' || echo './'`result.c
mv -f .deps/gmapl-result.Tpo .deps/gmapl-result.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-output.o -MD -MP -MF .deps/gmapl-output.Tpo -c -o gmapl-output.o 
`test -f 'output.c' || echo './'`output.c
mv -f .deps/gmapl-output.Tpo .deps/gmapl-output.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-inbuffer.o -MD -MP -MF .deps/gmapl-inbuffer.Tpo -c -o 
gmapl-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c
mv -f .deps/gmapl-inbuffer.Tpo .deps/gmapl-inbuffer.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-samheader.o -MD -MP -MF .deps/gmapl-samheader.Tpo -c -o 
gmapl-samheader.o `test -f 'samheader.c' || echo './'`samheader.c
mv -f .deps/gmapl-samheader.Tpo .deps/gmapl-samheader.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-outbuffer.o -MD -MP -MF .deps/gmapl-outbuffer.Tpo -c -o 
gmapl-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c
mv -f .deps/gmapl-outbuffer.Tpo .deps/gmapl-outbuffer.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-chimera.o -MD -MP -MF .deps/gmapl-chimera.Tpo -c -o gmapl-chimera.o 
`test -f 'chimera.c' || echo './'`chimera.c
mv -f .deps/gmapl-chimera.Tpo .deps/gmapl-chimera.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-datadir.o -MD -MP -MF .deps/gmapl-datadir.Tpo -c -o gmapl-datadir.o 
`test -f 'datadir.c' || echo './'`datadir.c
mv -f .deps/gmapl-datadir.Tpo .deps/gmapl-datadir.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-getopt.o -MD -MP -MF .deps/gmapl-getopt.Tpo -c -o gmapl-getopt.o 
`test -f 'getopt.c' || echo './'`getopt.c
mv -f .deps/gmapl-getopt.Tpo .deps/gmapl-getopt.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-getopt1.o -MD -MP -MF .deps/gmapl-getopt1.Tpo -c -o gmapl-getopt1.o 
`test -f 'getopt1.c' || echo './'`getopt1.c
mv -f .deps/gmapl-getopt1.Tpo .deps/gmapl-getopt1.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
-MT gmapl-gmap.o -MD -MP -MF .deps/gmapl-gmap.Tpo -c -o gmapl-gmap.o `test -f 
'gmap.c' || echo './'`gmap.c
mv -f .deps/gmapl-gmap.Tpo .deps/gmapl-gmap.Po
/bin/sh ../libtool --tag=CC   --mode=link /nxb-bin/usr/bin/cc  -D_THREAD_SAFE 
-pthread   -DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing 
  -EB -mabi=32 -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o 
gmapl-intlist.o gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o 
gmapl-univinterval.o gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o 
gmapl-access.o gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o 
gmapl-md5.o gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o 
gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o 
gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o 
gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o 
gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o 
gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o 
gmapl-matchpool.o gmapl-diagnostic.o gmapl-st
 age1.o gmapl-diag.o gmapl-diagpool.o gmapl-cmet.o gmapl-atoi.o 
gmapl-orderstat.o gmapl-oligoindex_hr.o gmapl-intron.o gmapl-maxent.o 
gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o gmapl-cellpool.o gmapl-stage2.o 
gmapl-doublelist.o gmapl-smooth.o gmapl-splicestringpool.o 
gmapl-splicetrie_build.o gmapl-splicetrie.o gmapl-boyer-moore.o gmapl-dynprog.o 
gmapl-dynprog_simd.o gmapl-dynprog_single.o gmapl-dynprog_genome.o 
gmapl-dynprog_cdna.o gmapl-dynprog_end.o gmapl-translation.o gmapl-pbinom.o 
gmapl-changepoint.o gmapl-stage3.o gmapl-request.o gmapl-result.o 
gmapl-output.o gmapl-inbuffer.o gmapl-samheader.o gmapl-outbuffer.o 
gmapl-chimera.o gmapl-datadir.o gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o  
-lz -lbz2 -lm 
libtool: link: /nxb-bin/usr/bin/cc -D_THREAD_SAFE -pthread 
-DTARGET=\"mips-portbld-freebsd12.0\" -DGMAPDB=\"/usr/local/share\" 
-DLARGE_GENOMES=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float -fno-strict-aliasing 
-EB -mabi=32 -o gmapl gmapl-except.o gmapl-assert.o gmapl-mem.o gmapl-intlist.o 
gmapl-list.o gmapl-littleendian.o gmapl-bigendian.o gmapl-univinterval.o 
gmapl-interval.o gmapl-uintlist.o gmapl-stopwatch.o gmapl-access.o 
gmapl-filestring.o gmapl-iit-read-univ.o gmapl-iit-read.o gmapl-md5.o 
gmapl-bzip2.o gmapl-sequence.o gmapl-reader.o gmapl-genomicpos.o 
gmapl-compress.o gmapl-compress-write.o gmapl-gbuffer.o gmapl-genome.o 
gmapl-popcount.o gmapl-genome128_hr.o gmapl-genome_sites.o gmapl-genome-write.o 
gmapl-bitpack64-read.o gmapl-bitpack64-readtwo.o gmapl-indexdb.o 
gmapl-indexdb_hr.o gmapl-oligo.o gmapl-block.o gmapl-chrom.o gmapl-segmentpos.o 
gmapl-chrnum.o gmapl-uinttable.o gmapl-gregion.o gmapl-match.o 
gmapl-matchpool.o gmapl-diagnostic.o gmapl-stage1.o gmapl-diag.o gmapl-diagpoo
 l.o gmapl-cmet.o gmapl-atoi.o gmapl-orderstat.o gmapl-oligoindex_hr.o 
gmapl-intron.o gmapl-maxent.o gmapl-maxent_hr.o gmapl-pair.o gmapl-pairpool.o 
gmapl-cellpool.o gmapl-stage2.o gmapl-doublelist.o gmapl-smooth.o 
gmapl-splicestringpool.o gmapl-splicetrie_build.o gmapl-splicetrie.o 
gmapl-boyer-moore.o gmapl-dynprog.o gmapl-dynprog_simd.o gmapl-dynprog_single.o 
gmapl-dynprog_genome.o gmapl-dynprog_cdna.o gmapl-dynprog_end.o 
gmapl-translation.o gmapl-pbinom.o gmapl-changepoint.o gmapl-stage3.o 
gmapl-request.o gmapl-result.o gmapl-output.o gmapl-inbuffer.o 
gmapl-samheader.o gmapl-outbuffer.o gmapl-chimera.o gmapl-datadir.o 
gmapl-getopt.o gmapl-getopt1.o gmapl-gmap.o  -lz -lbz2 -lm -pthread
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-except.o -MD -MP -MF 
.deps/get_genome-except.Tpo -c -o get_genome-except.o `test -f 'except.c' || 
echo './'`except.c
mv -f .deps/get_genome-except.Tpo .deps/get_genome-except.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-assert.o -MD -MP -MF 
.deps/get_genome-assert.Tpo -c -o get_genome-assert.o `test -f 'assert.c' || 
echo './'`assert.c
mv -f .deps/get_genome-assert.Tpo .deps/get_genome-assert.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-mem.o -MD -MP -MF 
.deps/get_genome-mem.Tpo -c -o get_genome-mem.o `test -f 'mem.c' || echo 
'./'`mem.c
mv -f .deps/get_genome-mem.Tpo .deps/get_genome-mem.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-intlist.o -MD -MP -MF 
.deps/get_genome-intlist.Tpo -c -o get_genome-intlist.o `test -f 'intlist.c' || 
echo './'`intlist.c
mv -f .deps/get_genome-intlist.Tpo .deps/get_genome-intlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-list.o -MD -MP -MF 
.deps/get_genome-list.Tpo -c -o get_genome-list.o `test -f 'list.c' || echo 
'./'`list.c
mv -f .deps/get_genome-list.Tpo .deps/get_genome-list.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-littleendian.o -MD -MP -MF 
.deps/get_genome-littleendian.Tpo -c -o get_genome-littleendian.o `test -f 
'littleendian.c' || echo './'`littleendian.c
mv -f .deps/get_genome-littleendian.Tpo .deps/get_genome-littleendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-bigendian.o -MD -MP -MF 
.deps/get_genome-bigendian.Tpo -c -o get_genome-bigendian.o `test -f 
'bigendian.c' || echo './'`bigendian.c
mv -f .deps/get_genome-bigendian.Tpo .deps/get_genome-bigendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-univinterval.o -MD -MP -MF 
.deps/get_genome-univinterval.Tpo -c -o get_genome-univinterval.o `test -f 
'univinterval.c' || echo './'`univinterval.c
mv -f .deps/get_genome-univinterval.Tpo .deps/get_genome-univinterval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-interval.o -MD -MP -MF 
.deps/get_genome-interval.Tpo -c -o get_genome-interval.o `test -f 'interval.c' 
|| echo './'`interval.c
mv -f .deps/get_genome-interval.Tpo .deps/get_genome-interval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-uintlist.o -MD -MP -MF 
.deps/get_genome-uintlist.Tpo -c -o get_genome-uintlist.o `test -f 'uintlist.c' 
|| echo './'`uintlist.c
mv -f .deps/get_genome-uintlist.Tpo .deps/get_genome-uintlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-stopwatch.o -MD -MP -MF 
.deps/get_genome-stopwatch.Tpo -c -o get_genome-stopwatch.o `test -f 
'stopwatch.c' || echo './'`stopwatch.c
mv -f .deps/get_genome-stopwatch.Tpo .deps/get_genome-stopwatch.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-access.o -MD -MP -MF 
.deps/get_genome-access.Tpo -c -o get_genome-access.o `test -f 'access.c' || 
echo './'`access.c
mv -f .deps/get_genome-access.Tpo .deps/get_genome-access.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-filestring.o -MD -MP -MF 
.deps/get_genome-filestring.Tpo -c -o get_genome-filestring.o `test -f 
'filestring.c' || echo './'`filestring.c
mv -f .deps/get_genome-filestring.Tpo .deps/get_genome-filestring.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-iit-read-univ.o -MD -MP -MF 
.deps/get_genome-iit-read-univ.Tpo -c -o get_genome-iit-read-univ.o `test -f 
'iit-read-univ.c' || echo './'`iit-read-univ.c
mv -f .deps/get_genome-iit-read-univ.Tpo .deps/get_genome-iit-read-univ.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-iit-read.o -MD -MP -MF 
.deps/get_genome-iit-read.Tpo -c -o get_genome-iit-read.o `test -f 'iit-read.c' 
|| echo './'`iit-read.c
mv -f .deps/get_genome-iit-read.Tpo .deps/get_genome-iit-read.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-md5.o -MD -MP -MF 
.deps/get_genome-md5.Tpo -c -o get_genome-md5.o `test -f 'md5.c' || echo 
'./'`md5.c
mv -f .deps/get_genome-md5.Tpo .deps/get_genome-md5.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-bzip2.o -MD -MP -MF 
.deps/get_genome-bzip2.Tpo -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo 
'./'`bzip2.c
mv -f .deps/get_genome-bzip2.Tpo .deps/get_genome-bzip2.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-sequence.o -MD -MP -MF 
.deps/get_genome-sequence.Tpo -c -o get_genome-sequence.o `test -f 'sequence.c' 
|| echo './'`sequence.c
mv -f .deps/get_genome-sequence.Tpo .deps/get_genome-sequence.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-genome.o -MD -MP -MF 
.deps/get_genome-genome.Tpo -c -o get_genome-genome.o `test -f 'genome.c' || 
echo './'`genome.c
mv -f .deps/get_genome-genome.Tpo .deps/get_genome-genome.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-genomicpos.o -MD -MP -MF 
.deps/get_genome-genomicpos.Tpo -c -o get_genome-genomicpos.o `test -f 
'genomicpos.c' || echo './'`genomicpos.c
mv -f .deps/get_genome-genomicpos.Tpo .deps/get_genome-genomicpos.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-chrom.o -MD -MP -MF 
.deps/get_genome-chrom.Tpo -c -o get_genome-chrom.o `test -f 'chrom.c' || echo 
'./'`chrom.c
mv -f .deps/get_genome-chrom.Tpo .deps/get_genome-chrom.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-chrnum.o -MD -MP -MF 
.deps/get_genome-chrnum.Tpo -c -o get_genome-chrnum.o `test -f 'chrnum.c' || 
echo './'`chrnum.c
mv -f .deps/get_genome-chrnum.Tpo .deps/get_genome-chrnum.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-datadir.o -MD -MP -MF 
.deps/get_genome-datadir.Tpo -c -o get_genome-datadir.o `test -f 'datadir.c' || 
echo './'`datadir.c
mv -f .deps/get_genome-datadir.Tpo .deps/get_genome-datadir.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-parserange.o -MD -MP -MF 
.deps/get_genome-parserange.Tpo -c -o get_genome-parserange.o `test -f 
'parserange.c' || echo './'`parserange.c
mv -f .deps/get_genome-parserange.Tpo .deps/get_genome-parserange.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-getopt.o -MD -MP -MF 
.deps/get_genome-getopt.Tpo -c -o get_genome-getopt.o `test -f 'getopt.c' || 
echo './'`getopt.c
mv -f .deps/get_genome-getopt.Tpo .deps/get_genome-getopt.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-getopt1.o -MD -MP -MF 
.deps/get_genome-getopt1.Tpo -c -o get_genome-getopt1.o `test -f 'getopt1.c' || 
echo './'`getopt1.c
mv -f .deps/get_genome-getopt1.Tpo .deps/get_genome-getopt1.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing -MT get_genome-get-genome.o -MD -MP -MF 
.deps/get_genome-get-genome.Tpo -c -o get_genome-get-genome.o `test -f 
'get-genome.c' || echo './'`get-genome.c
mv -f .deps/get_genome-get-genome.Tpo .deps/get_genome-get-genome.Po
/bin/sh ../libtool --tag=CC   --mode=link /nxb-bin/usr/bin/cc  -D_THREAD_SAFE 
-pthread -DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float  -fno-strict-aliasing   -EB -mabi=32 -o get-genome 
get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o 
get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o 
get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o 
get_genome-stopwatch.o get_genome-access.o get_genome-filestring.o 
get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o 
get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o 
get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o 
get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o 
get_genome-getopt1.o get_genome-get-genome.o  -lz -lbz2 -lm 
libtool: link: /nxb-bin/usr/bin/cc -D_THREAD_SAFE -pthread 
-DGMAPDB=\"/usr/local/share\" -DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 
-msoft-float -fno-strict-aliasing -EB -mabi=32 -o get-genome 
get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o 
get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o 
get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o 
get_genome-stopwatch.o get_genome-access.o get_genome-filestring.o 
get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o 
get_genome-bzip2.o get_genome-sequence.o get_genome-genome.o 
get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o 
get_genome-datadir.o get_genome-parserange.o get_genome-getopt.o 
get_genome-getopt1.o get_genome-get-genome.o  -lz -lbz2 -lm -pthread
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-except.o -MD -MP -MF .deps/gmapindex-except.Tpo -c -o 
gmapindex-except.o `test -f 'except.c' || echo './'`except.c
mv -f .deps/gmapindex-except.Tpo .deps/gmapindex-except.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-assert.o -MD -MP -MF .deps/gmapindex-assert.Tpo -c -o 
gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c
mv -f .deps/gmapindex-assert.Tpo .deps/gmapindex-assert.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-mem.o -MD -MP -MF .deps/gmapindex-mem.Tpo -c -o gmapindex-mem.o `test 
-f 'mem.c' || echo './'`mem.c
mv -f .deps/gmapindex-mem.Tpo .deps/gmapindex-mem.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-intlist.o -MD -MP -MF .deps/gmapindex-intlist.Tpo -c -o 
gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c
mv -f .deps/gmapindex-intlist.Tpo .deps/gmapindex-intlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-list.o -MD -MP -MF .deps/gmapindex-list.Tpo -c -o gmapindex-list.o 
`test -f 'list.c' || echo './'`list.c
mv -f .deps/gmapindex-list.Tpo .deps/gmapindex-list.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-littleendian.o -MD -MP -MF .deps/gmapindex-littleendian.Tpo -c -o 
gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c
mv -f .deps/gmapindex-littleendian.Tpo .deps/gmapindex-littleendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-bigendian.o -MD -MP -MF .deps/gmapindex-bigendian.Tpo -c -o 
gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c
mv -f .deps/gmapindex-bigendian.Tpo .deps/gmapindex-bigendian.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-univinterval.o -MD -MP -MF .deps/gmapindex-univinterval.Tpo -c -o 
gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c
mv -f .deps/gmapindex-univinterval.Tpo .deps/gmapindex-univinterval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-interval.o -MD -MP -MF .deps/gmapindex-interval.Tpo -c -o 
gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c
mv -f .deps/gmapindex-interval.Tpo .deps/gmapindex-interval.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-uintlist.o -MD -MP -MF .deps/gmapindex-uintlist.Tpo -c -o 
gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c
mv -f .deps/gmapindex-uintlist.Tpo .deps/gmapindex-uintlist.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-stopwatch.o -MD -MP -MF .deps/gmapindex-stopwatch.Tpo -c -o 
gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c
mv -f .deps/gmapindex-stopwatch.Tpo .deps/gmapindex-stopwatch.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-access.o -MD -MP -MF .deps/gmapindex-access.Tpo -c -o 
gmapindex-access.o `test -f 'access.c' || echo './'`access.c
mv -f .deps/gmapindex-access.Tpo .deps/gmapindex-access.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-filestring.o -MD -MP -MF .deps/gmapindex-filestring.Tpo -c -o 
gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c
mv -f .deps/gmapindex-filestring.Tpo .deps/gmapindex-filestring.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-iit-read-univ.o -MD -MP -MF .deps/gmapindex-iit-read-univ.Tpo -c -o 
gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo 
'./'`iit-read-univ.c
mv -f .deps/gmapindex-iit-read-univ.Tpo .deps/gmapindex-iit-read-univ.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-iit-write-univ.o -MD -MP -MF .deps/gmapindex-iit-write-univ.Tpo -c -o 
gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo 
'./'`iit-write-univ.c
mv -f .deps/gmapindex-iit-write-univ.Tpo .deps/gmapindex-iit-write-univ.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-iit-read.o -MD -MP -MF .deps/gmapindex-iit-read.Tpo -c -o 
gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c
mv -f .deps/gmapindex-iit-read.Tpo .deps/gmapindex-iit-read.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-md5.o -MD -MP -MF .deps/gmapindex-md5.Tpo -c -o gmapindex-md5.o `test 
-f 'md5.c' || echo './'`md5.c
mv -f .deps/gmapindex-md5.Tpo .deps/gmapindex-md5.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-bzip2.o -MD -MP -MF .deps/gmapindex-bzip2.Tpo -c -o gmapindex-bzip2.o 
`test -f 'bzip2.c' || echo './'`bzip2.c
mv -f .deps/gmapindex-bzip2.Tpo .deps/gmapindex-bzip2.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-sequence.o -MD -MP -MF .deps/gmapindex-sequence.Tpo -c -o 
gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c
mv -f .deps/gmapindex-sequence.Tpo .deps/gmapindex-sequence.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-genome.o -MD -MP -MF .deps/gmapindex-genome.Tpo -c -o 
gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c
mv -f .deps/gmapindex-genome.Tpo .deps/gmapindex-genome.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-genomicpos.o -MD -MP -MF .deps/gmapindex-genomicpos.Tpo -c -o 
gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c
mv -f .deps/gmapindex-genomicpos.Tpo .deps/gmapindex-genomicpos.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-compress-write.o -MD -MP -MF .deps/gmapindex-compress-write.Tpo -c -o 
gmapindex-compress-write.o `test -f 'compress-write.c' || echo 
'./'`compress-write.c
compress-write.c: In function 'nt_unshuffle':
compress-write.c:521: warning: integer constant is too large for 'long' type
compress-write.c:522: warning: integer constant is too large for 'long' type
compress-write.c:523: warning: integer constant is too large for 'long' type
compress-write.c:524: warning: integer constant is too large for 'long' type
mv -f .deps/gmapindex-compress-write.Tpo .deps/gmapindex-compress-write.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-genome-write.o -MD -MP -MF .deps/gmapindex-genome-write.Tpo -c -o 
gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c
mv -f .deps/gmapindex-genome-write.Tpo .deps/gmapindex-genome-write.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-compress.o -MD -MP -MF .deps/gmapindex-compress.Tpo -c -o 
gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c
mv -f .deps/gmapindex-compress.Tpo .deps/gmapindex-compress.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-popcount.o -MD -MP -MF .deps/gmapindex-popcount.Tpo -c -o 
gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c
mv -f .deps/gmapindex-popcount.Tpo .deps/gmapindex-popcount.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-genome128_hr.o -MD -MP -MF .deps/gmapindex-genome128_hr.Tpo -c -o 
gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c
mv -f .deps/gmapindex-genome128_hr.Tpo .deps/gmapindex-genome128_hr.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-bitpack64-read.o -MD -MP -MF .deps/gmapindex-bitpack64-read.Tpo -c -o 
gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo 
'./'`bitpack64-read.c
bitpack64-read.c: In function 'Bitpack64_read_one_huge':
bitpack64-read.c:14929: warning: integer constant is too large for 'long' type
bitpack64-read.c:14959: warning: integer constant is too large for 'long' type
bitpack64-read.c:14994: warning: integer constant is too large for 'long' type
bitpack64-read.c:15029: warning: integer constant is too large for 'long' type
bitpack64-read.c: In function 'Bitpack64_block_offsets_huge':
bitpack64-read.c:15367: warning: integer constant is too large for 'long' type
bitpack64-read.c:15373: warning: integer constant is too large for 'long' type
mv -f .deps/gmapindex-bitpack64-read.Tpo .deps/gmapindex-bitpack64-read.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-bitpack64-readtwo.o -MD -MP -MF .deps/gmapindex-bitpack64-readtwo.Tpo 
-c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo 
'./'`bitpack64-readtwo.c
mv -f .deps/gmapindex-bitpack64-readtwo.Tpo .deps/gmapindex-bitpack64-readtwo.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-bitpack64-access.o -MD -MP -MF .deps/gmapindex-bitpack64-access.Tpo 
-c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo 
'./'`bitpack64-access.c
mv -f .deps/gmapindex-bitpack64-access.Tpo .deps/gmapindex-bitpack64-access.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.     -D_THREAD_SAFE -pthread   
-DUTILITYP=1 -O2 -pipe -G0 -EB -mabi=32 -msoft-float  -fno-strict-aliasing -MT 
gmapindex-bitpack64-write.o -MD -MP -MF .deps/gmapindex-bitpack64-write.Tpo -c 
-o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo 
'./'`bitpack64-write.c
bitpack64-write.c: In function 'Bitpack64_write_differential_huge':
bitpack64-write.c:5009: warning: integer constant is too large for 'long' type
bitpack64-write.c:5024: warning: integer constant is too large for 'long' type
bitpack64-write.c:5052: warning: integer constant is too large for 'long' type
bitpack64-write.c: In function 'Bitpack64_write_fixed10_huge':
bitpack64-write.c:5177: warning: integer constant is too large for 'long' type
bitpack64-write.c:5194: warning: integer constant is too large for 'long' type
bitpack64-write.c:5226: warning: integer constant is too large for 'long' type
{standard input}: Assembler messages:
{standard input}:2372: Error: unrecognized opcode `bsr $2,$2'
{standard input}:2423: Error: unrecognized opcode `bsr $7,$2'
{standard input}:2526: Error: unrecognized opcode `bsr $2,$2'
{standard input}:2572: Error: unrecognized opcode `bsr $6,$2'
gmake[3]: *** [Makefile:5132: gmapindex-bitpack64-write.o] Error 1
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src'
gmake[2]: *** [Makefile:1195: all] Error 2
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21/src'
gmake[1]: *** [Makefile:315: all-recursive] Error 1
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/gmap/work/gmap-2015-09-21'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/gmap
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