You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     po...@freebsd.org
Last committer: amd...@freebsd.org
Ident:          $FreeBSD: head/biology/lamarc/Makefile 420392 2016-08-18 
09:31:58Z amdmi3 $
Log URL:        
http://beefy12.nyi.freebsd.org/data/head-amd64-default/p460069_s328457/logs/lamarc-2.1.8_1,1.log
Build URL:      
http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p460069_s328457
Log:

=>> Building biology/lamarc
build started at Sun Jan 28 10:18:32 UTC 2018
port directory: /usr/ports/biology/lamarc
package name: lamarc-2.1.8_1,1
building for: FreeBSD head-amd64-default-job-02 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200056 amd64
maintained by: po...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/lamarc/Makefile 420392 2016-08-18 
09:31:58Z amdmi3 $
Poudriere version: 3.2.4-20-g3ab5fc55
Host OSVERSION: 1200054
Jail OSVERSION: 1200056
Job Id: 02




!!! Jail is newer than host. (Jail: 1200056, Host: 1200054) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
OSVERSION=1200056
UNAME_v=FreeBSD 12.0-CURRENT 1200056
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
SAVED_TERM=
MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
OLDPWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool
MASTERNAME=head-amd64-default
SCRIPTPREFIX=/usr/local/share/poudriere
USER=root
HOME=/root
P_PYTHON_MAJOR_VER=2
POUDRIERE_VERSION=3.2.4-20-g3ab5fc55
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
LIBEXECPREFIX=/usr/local/libexec/poudriere
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for lamarc-2.1.8_1,1:
     DOCS=on: Build and/or install documentation
     WXGTK=off: wxGTK GUI toolkit support
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
po...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--disable-converter --prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lamarc/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lamarc/work  
HOME=/wrkdirs/usr/ports/biology/lamarc/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/lamarc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/lamarc/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/lamarc/work  
HOME=/wrkdirs/usr/ports/biology/lamarc/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/lamarc/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="cc" CFLAGS="-O2 
-pipe  -fstack-protector -fno-strict-aliasing"  CPP="cpp" CPPFLAGS=""  
LDFLAGS=" -fstack-protector" LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe 
-fstack-protector -fno-strict-aliasing "  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644" 
 BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  
BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/lamarc"  
EXAMPLESDIR="share/examples/lamarc"  DATADIR="share/lamarc"  
WWWDIR="www/lamarc"  ETCDIR="etc/lamarc"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/lamarc 
DOCSDIR=/usr/local/share/doc/lamarc 
EXAMPLESDIR=/usr/local/share/examples/lamarc  WWWDIR=/usr/local/www/lamarc 
ETCDIR=/usr/local/etc/lamarc
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=amd64
CONFIGURE_MAX_CMD_LEN=262144
HAVE_COMPAT_IA32_KERN=YES
OPSYS=FreeBSD
OSREL=12.0
OSVERSION=1200056
PYTHONBASE=/usr/local
UID=0
_OSRELEASE=12.0-CURRENT
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>   NOTICE:

The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License APACHE20 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   lamarc-2.1.8_1,1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.4.txz
[head-amd64-default-job-02] Installing pkg-1.10.4...
[head-amd64-default-job-02] Extracting pkg-1.10.4: .......... done
===>   lamarc-2.1.8_1,1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of lamarc-2.1.8_1,1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>   NOTICE:

The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by lamarc-2.1.8_1,1 for building
===========================================================================
=======================<phase: checksum       >============================
===>   NOTICE:

The lamarc port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port

===>  License APACHE20 accepted by the user
===> Fetching all distfiles required by lamarc-2.1.8_1,1 for building
=> SHA256 Checksum OK for lamarc-2.1.8-src.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>   NOTICE:
<snip>
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
                                                              ^
In file included from src/report/xml_report.cpp:15:
In file included from ./src/force/force.h:16:
In file included from ./src/postlike/plforces.h:29:
./src/tree/summary.h:33:1: warning: class 'Interval' was previously declared as 
a struct [-Wmismatched-tags]
class Interval;
^
./src/tree/intervaldata.h:55:8: note: previous use is here
struct Interval
       ^
./src/tree/summary.h:33:1: note: did you mean struct here?
class Interval;
^~~~~
struct
./src/tree/summary.h:195:52: warning: unused parameter 'totals' 
[-Wunused-parameter]
    virtual void AdjustSummary(const DoubleVec1d & totals, long region) {};
                                                   ^
./src/tree/summary.h:195:65: warning: unused parameter 'region' 
[-Wunused-parameter]
    virtual void AdjustSummary(const DoubleVec1d & totals, long region) {};
                                                                ^
In file included from src/report/xml_report.cpp:15:
In file included from ./src/force/force.h:16:
./src/postlike/plforces.h:401:45: warning: unused parameter 'param' 
[-Wunused-parameter]
    double DlnWait (const vector < double >&param,
                                            ^
./src/postlike/plforces.h:402:41: warning: unused parameter 'treedata' 
[-Wunused-parameter]
                    const TreeSummary * treedata,
                                        ^
./src/postlike/plforces.h:403:33: warning: unused parameter 'whichparam' 
[-Wunused-parameter]
                    const long &whichparam) { assert(false); return 0;};
                                ^
./src/postlike/plforces.h:405:46: warning: unused parameter 'param' 
[-Wunused-parameter]
    double DlnPoint (const vector < double >&param,
                                             ^
./src/postlike/plforces.h:406:42: warning: unused parameter 'treedata' 
[-Wunused-parameter]
                     const TreeSummary * treedata,
                                         ^
./src/postlike/plforces.h:407:34: warning: unused parameter 'whichparam' 
[-Wunused-parameter]
                     const long &whichparam) { assert(false); return 0;};
                                 ^
./src/postlike/plforces.h:468:44: warning: unused parameter 'param' 
[-Wunused-parameter]
    double lnWait (const vector < double >&param,
                                           ^
./src/postlike/plforces.h:469:40: warning: unused parameter 'treedata' 
[-Wunused-parameter]
                   const TreeSummary * treedata) { return 1.0; };
                                       ^
./src/postlike/plforces.h:471:45: warning: unused parameter 'param' 
[-Wunused-parameter]
    double lnPoint (const vector < double >&param,
                                            ^
./src/postlike/plforces.h:472:45: warning: unused parameter 'lparam' 
[-Wunused-parameter]
                    const vector < double >&lparam,
                                            ^
./src/postlike/plforces.h:473:41: warning: unused parameter 'treedata' 
[-Wunused-parameter]
                    const TreeSummary * treedata) { return 1.0; };
                                        ^
./src/postlike/plforces.h:475:45: warning: unused parameter 'param' 
[-Wunused-parameter]
    double DlnWait (const vector < double >&param,
                                            ^
./src/postlike/plforces.h:476:41: warning: unused parameter 'treedata' 
[-Wunused-parameter]
                    const TreeSummary * treedata,
                                        ^
./src/postlike/plforces.h:477:33: warning: unused parameter 'whichparam' 
[-Wunused-parameter]
                    const long &whichparam) { return 1.0; };
                                ^
./src/postlike/plforces.h:479:46: warning: unused parameter 'param' 
[-Wunused-parameter]
    double DlnPoint (const vector < double >&param,
                                             ^
./src/postlike/plforces.h:480:42: warning: unused parameter 'treedata' 
[-Wunused-parameter]
                     const TreeSummary * treedata,
                                         ^
./src/postlike/plforces.h:481:34: warning: unused parameter 'whichparam' 
[-Wunused-parameter]
                     const long &whichparam) { return 1.0; };
                                 ^
In file included from src/report/xml_report.cpp:15:
./src/force/force.h:256:61: warning: unused parameter 'fs' [-Wunused-parameter]
    virtual void           ModifyEvents(const ForceSummary& fs,
                                                            ^
./src/force/force.h:549:61: warning: unused parameter 'mystatus' 
[-Wunused-parameter]
    virtual std::string    MakeStatusXML(const std::string& mystatus) const { 
return string(""); };
                                                            ^
./src/force/force.h:583:61: warning: unused parameter 'mystatus' 
[-Wunused-parameter]
    virtual std::string    MakeStatusXML(const std::string& mystatus) const { 
return string(""); };
                                                            ^
In file included from src/report/xml_report.cpp:18:
In file included from ./src/datalike/region.h:38:
./src/tree/newick.h:46:37: warning: unused parameter 'stump' 
[-Wunused-parameter]
    virtual void ToLamarcTree(Tree& stump) { assert(false); }; // instantiating 
NULL tree
                                    ^
In file included from src/report/xml_report.cpp:19:
./src/report/reportpage.h:29:1: warning: class 'PlotStruct' was previously 
declared as a struct [-Wmismatched-tags]
class PlotStruct;
^
./src/postlike/plotstat.h:26:8: note: previous use is here
struct PlotStruct
       ^
./src/report/reportpage.h:29:1: note: did you mean struct here?
class PlotStruct;
^~~~~
struct
./src/report/reportpage.h:212:10: warning: 'ProfPage::PrintTable' hides 
overloaded virtual function [-Woverloaded-virtual]
    void PrintTable(StringVec3d& wrappedtable);
         ^
./src/report/reportpage.h:106:18: note: hidden overloaded virtual function 
'ReportPage::PrintTable' declared here: different number of parameters (4 vs 1)
    virtual void PrintTable(vector<string> &colhdr, StringVec2d &rowhdr,
                 ^
src/report/xml_report.cpp:39:36: warning: unused parameter 'tag' 
[-Wunused-parameter]
                        force_type tag,
                                   ^
In file included from src/report/xml_report.cpp:13:
In file included from ./src/control/chainmanager.h:30:
In file included from ./src/control/chainpack.h:18:
In file included from ./src/control/chainout.h:31:
In file included from /usr/include/c++/v1/map:442:
/usr/include/c++/v1/__tree:1819:22: warning: the specified comparator type does 
not provide a const call operator [-Wuser-defined-warnings]
                     __trigger_diagnostics()), "");
                     ^
/usr/include/c++/v1/set:400:28: note: in instantiation of member function 
'std::__1::__tree<std::__1::pair<long, long>, rangecmp, 
std::__1::allocator<std::__1::pair<long, long> > >::~__tree' requested here
class _LIBCPP_TEMPLATE_VIS set
                           ^
/usr/include/c++/v1/__tree:970:7: note: from 'diagnose_if' attribute on 
'__trigger_diagnostics':
      _LIBCPP_DIAGNOSE_WARNING(!__invokable<_Compare const&, _Tp const&, _Tp 
const&>::value,
      ^                        
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/__config:1130:20: note: expanded from macro 
'_LIBCPP_DIAGNOSE_WARNING'
    __attribute__((diagnose_if(__VA_ARGS__, "warning")))
                   ^           ~~~~~~~~~~~
77 warnings generated.
mv -f .deps/lamarc-xml_report.Tpo .deps/lamarc-xml_report.Po
c++ -DHAVE_CONFIG_H -I. -I./config    -DLAMARC_COMPILE_LINUX      -DNDEBUG      
       -Wall -Wextra -Wno-unused -I ./config  -I ./config  -I ./src/bayeslike  
-I ./src/control  -I ./src/conversion  -I ./src/convErr  -I ./src/convModel  -I 
./src/convParse  -I ./src/convStrings  -I ./src/convUtil  -I ./src/datalike  -I 
./src/force  -I ./src/guiconv  -I ./src/guiutil  -I ./src/lamarcmenus  -I 
./src/menu  -I ./src/postlike  -I ./src/report  -I ./src/tools  -I ./src/tree  
-I ./src/ui_interface  -I ./src/ui_util  -I ./src/ui_vars  -I ./src/xml  -I 
./boost  -I ./resources  -I ./tinyxml -DTIXML_USE_STL -O2 -pipe 
-fstack-protector -fno-strict-aliasing -MT lamarc-mathx.o -MD -MP -MF 
.deps/lamarc-mathx.Tpo -c -o lamarc-mathx.o `test -f 'src/tools/mathx.cpp' || 
echo './'`src/tools/mathx.cpp
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:42:
In file included from ./boost/random/ranlux.hpp:21:
./boost/random/discard_block.hpp:68:38: warning: unused parameter 'x' 
[-Wunused-parameter]
  static bool validation(result_type x) { return true; }  // dummy
                                     ^
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:22:
In file included from ./src/tools/random.h:15:
In file included from ./boost/random.hpp:53:
In file included from ./boost/random/random_number_generator.hpp:22:
In file included from ./boost/random/uniform_int.hpp:26:
./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' 
[-Wunused-parameter]
InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl)
                                                              ^
In file included from src/tools/mathx.cpp:21:
In file included from ./src/control/registry.h:24:
In file included from ./src/control/regiongammainfo.h:16:
./src/force/paramstat.h:99:59: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleIndividualStatus(force_type ftype) const { return 
ToString(pstat_unconstrained); };
                                                          ^
./src/force/paramstat.h:100:54: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleGroupStatus(force_type ftype) const { return 
ToString(pstat_identical); };
                                                     ^
./src/force/paramstat.h:121:59: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleIndividualStatus(force_type ftype) const { return 
ToString(pstat_constant); };
                                                          ^
./src/force/paramstat.h:122:54: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleGroupStatus(force_type ftype) const { return 
ToString(pstat_constant); };
                                                     ^
./src/force/paramstat.h:163:59: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleIndividualStatus(force_type ftype) const { return 
ToString(pstat_unconstrained); };
                                                          ^
./src/force/paramstat.h:164:54: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleGroupStatus(force_type ftype) const { return 
ToString(pstat_constant); };
                                                     ^
./src/force/paramstat.h:181:59: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleIndividualStatus(force_type ftype) const { return 
ToString(pstat_unconstrained); };
                                                          ^
./src/force/paramstat.h:182:54: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleGroupStatus(force_type ftype) const { return 
ToString(pstat_constant); };
                                                     ^
./src/force/paramstat.h:201:59: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleIndividualStatus(force_type ftype) const { return 
ToString(pstat_unconstrained); };
                                                          ^
./src/force/paramstat.h:202:54: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleGroupStatus(force_type ftype) const { return 
ToString(pstat_constant); };
                                                     ^
./src/force/paramstat.h:219:59: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleIndividualStatus(force_type ftype) const { return 
ToString(pstat_unconstrained); };
                                                          ^
./src/force/paramstat.h:220:54: warning: unused parameter 'ftype' 
[-Wunused-parameter]
    virtual std::string ToggleGroupStatus(force_type ftype) const { return 
ToString(pstat_constant); };
                                                     ^
src/tools/mathx.cpp:781:12: error: no matching function for call to 'make_pair'
    return std::make_pair<DoubleVec1d, DoubleVec2d>(eigvals, eigvecs);
           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/v1/utility:639:1: note: candidate function not viable: no 
known conversion from 'DoubleVec1d' (aka 'vector<double>') to 
'std::__1::vector<double, std::__1::allocator<double> > &&' for 1st argument
make_pair(_T1&& __t1, _T2&& __t2)
^
14 warnings and 1 error generated.
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/lamarc
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