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Maintainer: mz...@niid.go.jp Last committer: lini...@freebsd.org Ident: $FreeBSD: branches/2018Q1/biology/hmmer/Makefile 456588 2017-12-18 04:28:28Z linimon $ Log URL: http://thunderx1.nyi.freebsd.org/data/111arm64-quarterly/460130/logs/hmmer-3.1b2.log Build URL: http://thunderx1.nyi.freebsd.org/build.html?mastername=111arm64-quarterly&build=460130 Log: =>> Building biology/hmmer build started at Sun Jan 28 18:35:05 UTC 2018 port directory: /usr/ports/biology/hmmer package name: hmmer-3.1b2 building for: FreeBSD 111arm64-quarterly-job-19 11.1-RELEASE-p6 FreeBSD 11.1-RELEASE-p6 1101001 arm64 maintained by: mz...@niid.go.jp Makefile ident: $FreeBSD: branches/2018Q1/biology/hmmer/Makefile 456588 2017-12-18 04:28:28Z linimon $ Poudriere version: 3.2.4-20-g3ab5fc55 Host OSVERSION: 1200054 Jail OSVERSION: 1101001 Job Id: 19 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1101001 UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001 UNAME_r=11.1-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/111arm64-quarterly/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk OLDPWD=/usr/local/poudriere/data/.m/111arm64-quarterly/ref/.p P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS PWD=/usr/local/poudriere/data/.m/111arm64-quarterly/ref/.p/pool MASTERNAME=111arm64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root P_PYTHON_MAJOR_VER=2 POUDRIERE_VERSION=3.2.4-20-g3ab5fc55 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for hmmer-3.1b2: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples TEST=off: Build and/or run tests ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- mz...@niid.go.jp --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hmmer/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hmmer/work HOME=/wrkdirs/usr/ports/biology/hmmer/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hmmer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/hmmer/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/hmmer/work HOME=/wrkdirs/usr/ports/biology/hmmer/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/hmmer/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/hmmer" EXAMPLESDIR="share/examples/hmmer" DATADIR="share/hmmer" WWWDIR="www/hmmer" ETCDIR="etc/hmmer" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/hmmer DOCSDIR=/usr/local/share/doc/hmmer EXAMPLESDIR=/usr/local/share/examples/hmmer WWWDIR=/usr/local/www/hmmer ETCDIR=/usr/local/etc/hmmer --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=aarch64 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local UID=0 _OSRELEASE=11.1-RELEASE-p6 #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 1048576 stack size (kbytes, -s) 1048576 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> hmmer-3.1b2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.3_1.txz [111arm64-quarterly-job-19] Installing pkg-1.10.3_1... [111arm64-quarterly-job-19] Extracting pkg-1.10.3_1: .......... done ===> hmmer-3.1b2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of hmmer-3.1b2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by hmmer-3.1b2 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by hmmer-3.1b2 for building => SHA256 Checksum OK for hmmer-3.1b2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by hmmer-3.1b2 for building ===> Extracting for hmmer-3.1b2 => SHA256 Checksum OK for hmmer-3.1b2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for hmmer-3.1b2 ===> Applying FreeBSD patches for hmmer-3.1b2 =========================================================================== =======================<phase: build-depends >============================ ===> hmmer-3.1b2 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_1.txz [111arm64-quarterly-job-19] Installing gmake-4.2.1_1... [111arm64-quarterly-job-19] `-- Installing gettext-runtime-0.19.8.1_1... [111arm64-quarterly-job-19] | `-- Installing indexinfo-0.3.1... [111arm64-quarterly-job-19] | `-- Extracting indexinfo-0.3.1: .... done [111arm64-quarterly-job-19] `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [111arm64-quarterly-job-19] Extracting gmake-4.2.1_1: .......... done ===> hmmer-3.1b2 depends on executable: gmake - found ===> Returning to build of hmmer-3.1b2 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for hmmer-3.1b2 configure: loading site script /usr/ports/Templates/config.site configure: Configuring HMMER for your system. checking build system type... aarch64-portbld-freebsd11.1 checking host system type... aarch64-portbld-freebsd11.1 configure: Full HMMER source distribution - using full configuration checking for gcc... cc checking whether the C compiler works... no configure: error: in `/wrkdirs/usr/ports/biology/hmmer/work/hmmer-3.1b2': configure: error: C compiler cannot create executables See `config.log' for more details ===> Script "configure" failed unexpectedly. Please report the problem to mz...@niid.go.jp [maintainer] and attach the "/wrkdirs/usr/ports/biology/hmmer/work/hmmer-3.1b2/config.log" including the output of the failure of your make command. Also, it might be a good idea to provide an overview of all packages installed on your system (e.g. a /usr/local/sbin/pkg-static info -g -Ea). *** Error code 1 Stop. make: stopped in /usr/ports/biology/hmmer _______________________________________________ freebsd-pkg-fallout@freebsd.org mailing list https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"
