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build.

Maintainer:     m...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: branches/2014Q1/science/libghemical/Makefile 331644 
2013-10-26 00:52:33Z gerald $
Log URL:        
http://beefy1.isc.freebsd.org/bulk/10i386-quarterly/2013-12-16_15h18m40s/logs/libghemical-3.0.0_1.log
Build URL:      
http://beefy1.isc.freebsd.org/bulk/10i386-quarterly/2013-12-16_15h18m40s
Log:

====>> Building science/libghemical
build started at Mon Dec 16 20:16:00 UTC 2013
port directory: /usr/ports/science/libghemical
building for: FreeBSD 10i386-quarterly-job-15 10.0-RC1 FreeBSD 10.0-RC1 i386
maintained by: m...@freebsd.org
Makefile ident:      $FreeBSD: branches/2014Q1/science/libghemical/Makefile 
331644 2013-10-26 00:52:33Z gerald $
Poudriere version: 3.1-pre

---Begin Environment---
UNAME_m=i386
UNAME_p=i386
OSVERSION=1000510
UNAME_v=FreeBSD 10.0-RC1
UNAME_r=10.0-RC1
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
MASTERMNT=/usr/local/poudriere/data/build/10i386-quarterly/ref
PKG_EXT=txz
tpid=96165
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin
POUDRIERE_BUILD_TYPE=bulk
PKGNG=1
PKGNAME=libghemical-3.0.0_1
PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f
PKG_ADD=/usr/local/sbin/pkg-static add
PWD=/home/bdrewery
MASTERNAME=10i386-quarterly
USER=root
HOME=/root
POUDRIERE_VERSION=3.1-pre
LOCALBASE=/usr/local
PACKAGE_BUILDING=yes
PKG_VERSION=/poudriere/pkg-static version
PKG_BIN=/usr/local/sbin/pkg-static
---End Environment---

---Begin OPTIONS List---
---End OPTIONS List---

--CONFIGURE_ARGS--
--enable-mpqc --x-libraries=/usr/local/lib --x-includes=/usr/local/include 
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
TMPDIR="/tmp" PKG_CONFIG=pkgconf MAKE=gmake SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
F77="gfortran46" FC="gfortran46" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES F77="gfortran46" FC="gfortran46" 
FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc46" 
ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" 
AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" 
GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" 
OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" 
RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" 
SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local  
LOCALBASE=/usr/local  LIBDIR="/usr/lib"  CC="gcc46" CFLAGS="-O2 -pipe 
-Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing"  CPP="cpp46" CPPFLAGS=""  
LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc46 -L/usr/local/lib/gcc46"  CXX="g++46" 
CXXFLAGS="-O2 -pipe -Wl,-rpath=/usr/local/lib/gcc46 -fno-strict-aliasing 
-Wl,-rpath=/usr/local/lib/gcc46"  MANPREFIX="/usr/local" 
BSD_INSTALL_PROGRAM="install  -s -o root -g wheel -m 555"  
BSD_INSTALL_LIB="install  -s -o root -g wheel -m 444"  BSD_INST
 ALL_SCRIPT="install  -o root -g wheel -m 555"  BSD_INSTALL_DATA="install  -o 
root -g wheel -m 444"  BSD_INSTALL_MAN="install  -o root -g wheel -m 444"
--End MAKE_ENV--

--SUB_LIST--
PREFIX=/usr/local
LOCALBASE=/usr/local
DATADIR=/usr/local/share/libghemical
DOCSDIR=/usr/local/share/doc/libghemical
EXAMPLESDIR=/usr/local/share/examples/libghemical
WWWDIR=/usr/local/www/libghemical
ETCDIR=/usr/local/etc/libghemical
--End SUB_LIST--

---Begin make.conf---
ARCH=i386
MACHINE=i386
MACHINE_ARCH=i386
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
#### /usr/local/etc/poudriere.d/make.conf ####
WITH_PKGNG=yes
NO_RESTRICTED=yes
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
===>  Cleaning for libghemical-3.0.0_1
=======================<phase: check-config   >============================
===========================================================================
=======================<phase: pkg-depends    >============================
===>   libghemical-3.0.0_1 depends on file: /usr/local/sbin/pkg - not found
===>    Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg
===>   Installing existing package /packages/All/pkg-1.2.4_1.txz
Installing pkg-1.2.4_1... done
If you are upgrading from the old package format, first run:

  # pkg2ng
===>   Returning to build of libghemical-3.0.0_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===> Fetching all distfiles required by libghemical-3.0.0_1 for building
===========================================================================
=======================<phase: checksum       >============================
===> Fetching all distfiles required by libghemical-3.0.0_1 for building
=> SHA256 Checksum OK for libghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===> Fetching all distfiles required by libghemical-3.0.0_1 for building
===>  Extracting for libghemical-3.0.0_1
=> SHA256 Checksum OK for libghemical-3.0.0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for libghemical-3.0.0_1
===========================================================================
=======================<phase: build-depends  >============================
===>   libghemical-3.0.0_1 depends on executable: obabel - not found
===>    Verifying install for obabel in /usr/ports/science/openbabel
===>   Installing existing package /packages/All/openbabel-2.3.2.txz
Installing openbabel-2.3.2...Installing gettext-0.18.3.1... done
Installing libxml2-2.8.0_3... done
Installing python27-2.7.6_1... done
Installing python2-2_2... done
Installing python-2.7_1,2... done
 done
====
Note that some of the standard modules are provided as separate
ports since they require extra dependencies:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

Install them as needed.
====
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on executable: intltool-update - not found
===>    Verifying install for intltool-update in /usr/ports/textproc/intltool
===>   Installing existing package /packages/All/intltool-0.50.2.txz
Installing intltool-0.50.2...Installing p5-XML-Parser-2.41_1...Installing 
expat-2.1.0... done
Installing perl5-5.16.3_4...Removing /usr/local/etc/perl5_version... Done.
Creating /usr/local/etc/perl5_version... Done.
Removing stale symlinks from /usr/bin...
    Skipping /usr/bin/perl
    Skipping /usr/bin/perl5
Done.
Creating various symlinks in /usr/bin...
    Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl
    Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5
Done.
 done
 done
 done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on executable: ld - found
===>   libghemical-3.0.0_1 depends on executable: pkgconf - not found
===>    Verifying install for pkgconf in /usr/ports/devel/pkgconf
===>   Installing existing package /packages/All/pkgconf-0.9.3.txz
Installing pkgconf-0.9.3... done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on executable: gmake - not found
===>    Verifying install for gmake in /usr/ports/devel/gmake
===>   Installing existing package /packages/All/gmake-3.82_1.txz
Installing gmake-3.82_1... done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on executable: gcc46 - not found
===>    Verifying install for gcc46 in /usr/ports/lang/gcc
===>   Installing existing package /packages/All/gcc-4.6.4.txz
Installing gcc-4.6.4...Installing binutils-2.23.2... done
Installing gcc-ecj-4.5... done
Installing gmp-5.1.3... done
Installing mpc-1.0.1...Installing mpfr-3.1.2... done
 done
 done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on file: /usr/local/bin/as - found
===>   libghemical-3.0.0_1 depends on file: 
/usr/local/libdata/pkgconfig/glproto.pc - not found
===>    Verifying install for /usr/local/libdata/pkgconfig/glproto.pc in 
/usr/ports/x11/glproto
===>   Installing existing package /packages/All/glproto-1.4.16.txz
Installing glproto-1.4.16... done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on file: 
/usr/local/libdata/pkgconfig/dri2proto.pc - not found
===>    Verifying install for /usr/local/libdata/pkgconfig/dri2proto.pc in 
/usr/ports/x11/dri2proto
===>   Installing existing package /packages/All/dri2proto-2.8.txz
Installing dri2proto-2.8... done
===>   Returning to build of libghemical-3.0.0_1
===========================================================================
=======================<phase: lib-depends    >============================
===>   libghemical-3.0.0_1 depends on shared library: libintl.so - found
===>   libghemical-3.0.0_1 depends on shared library: libGL.so - not found
===>    Verifying for libGL.so in /usr/ports/graphics/libGL
===>   Installing existing package /packages/All/libGL-7.6.1_4.txz
Installing libGL-7.6.1_4...Installing damageproto-1.2.1... done
Installing fixesproto-5.0... done
Installing kbproto-1.0.6... done
Installing libX11-1.6.2,1...Installing libXau-1.0.8...Installing 
xproto-7.0.24... done
 done
Installing libXdmcp-1.1.1... done
Installing libpthread-stubs-0.3_4... done
Installing libxcb-1.9.1_1... done
 done
Installing libXdamage-1.1.4...Installing libXfixes-5.0.1... done
 done
Installing libXext-1.3.2,1...Installing xextproto-7.2.1... done
 done
Installing libXxf86vm-1.1.3...Installing xf86vidmodeproto-2.3.1... done
 done
Installing libdrm-2.4.17_1...Installing pciids-20131130... done
Installing libpciaccess-0.13.2... done
 done
 done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on shared library: mpqc - not found
===>    Verifying install for mpqc in /usr/ports/science/mpqc
===>   Installing existing package /packages/All/mpqc-2.3.1_17.txz
Installing mpqc-2.3.1_17...Installing libint-1.1.4... done
Installing lapack-3.4.2_1...Installing blas-3.4.2_1... done
 done
 done
===>   Returning to build of libghemical-3.0.0_1
===>   libghemical-3.0.0_1 depends on shared library: f2c - not found
===>    Verifying install for f2c in /usr/ports/lang/f2c
===>   Installing existing package /packages/All/f2c-20060810_3.txz
Installing f2c-20060810_3... done
===>   Returning to build of libghemical-3.0.0_1
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for libghemical-3.0.0_1
===>   FreeBSD 10 autotools fix applied to 
/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/acinclude.m4
===>   FreeBSD 10 autotools fix applied to 
/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/aclocal.m4
===>   FreeBSD 10 autotools fix applied to 
/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/configure
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether gmake sets $(MAKE)... yes
checking build system type... i386-portbld-freebsd10.0
checking host system type... i386-portbld-freebsd10.0
checking for gcc... gcc46
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc46 accepts -g... yes
checking for gcc46 option to accept ISO C89... none needed
checking for style of include used by gmake... GNU
checking dependency style of gcc46... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether g++46 accepts -g... yes
checking dependency style of g++46... gcc3
checking how to run the C preprocessor... cpp46
checking how to run the C++ preprocessor... g++46 -E
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by gcc46... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/local/bin/nm
checking the name lister (/usr/local/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... no
checking for /usr/local/bin/ld option to reload object files... -r
checking for objdump... /usr/local/bin/objdump
checking how to recognize dependent libraries... pass_all
checking for ar... /usr/local/bin/ar
checking for strip... strip
checking for ranlib... /usr/local/bin/ranlib
checking command to parse /usr/local/bin/nm output from gcc46 object... ok
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++46 accepts -g... (cached) yes
checking dependency style of g++46... (cached) gcc3
checking how to run the C++ preprocessor... g++46 -E
checking for objdir... .libs
checking if gcc46 supports -fno-rtti -fno-exceptions... no
checking for gcc46 option to produce PIC... -fPIC -DPIC
checking if gcc46 PIC flag -fPIC -DPIC works... yes
checking if gcc46 static flag -static works... yes
checking if gcc46 supports -c -o file.o... yes
checking if gcc46 supports -c -o file.o... (cached) yes
checking whether the gcc46 linker (/usr/local/bin/ld) supports shared 
libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd10.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for ld used by g++46... /usr/local/bin/ld
checking if the linker (/usr/local/bin/ld) is GNU ld... yes
checking whether the g++46 linker (/usr/local/bin/ld) supports shared 
libraries... yes
checking for g++46 option to produce PIC... -fPIC -DPIC
checking if g++46 PIC flag -fPIC -DPIC works... yes
checking if g++46 static flag -static works... yes
checking if g++46 supports -c -o file.o... yes
checking if g++46 supports -c -o file.o... (cached) yes
checking whether the g++46 linker (/usr/local/bin/ld) supports shared 
libraries... yes
checking dynamic linker characteristics... freebsd10.0 ld.so
checking how to hardcode library paths into programs... immediate
checking for ar... /usr/local/bin/ar
checking for sh... /bin/sh
checking whether gmake sets $(MAKE)... (cached) yes
checking pkg-config is at least version 0.9.0... yes
checking whether NLS is requested... yes
checking for intltool >= 0.40.0... 0.50.2 found
checking for intltool-update... /usr/local/bin/intltool-update
checking for intltool-merge... /usr/local/bin/intltool-merge
checking for intltool-extract... /usr/local/bin/intltool-extract
checking for xgettext... /usr/local/bin/xgettext
checking for msgmerge... /usr/local/bin/msgmerge
checking for msgfmt... /usr/local/bin/msgfmt
checking for gmsgfmt... /usr/local/bin/msgfmt
checking for perl... /usr/bin/perl
checking for perl >= 5.8.1... 5.16.3
checking for XML::Parser... ok
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking for LC_MESSAGES... yes
checking libintl.h usability... yes
checking libintl.h presence... yes
checking for libintl.h... yes
checking for ngettext in libc... no
checking for bindtextdomain in -lintl... yes
checking for ngettext in -lintl... yes
checking for dgettext in -lintl... yes
checking for bind_textdomain_codeset... yes
checking for msgfmt... (cached) /usr/local/bin/msgfmt
checking for dcgettext... yes
checking if msgfmt accepts -c... yes
checking for gmsgfmt... (cached) /usr/local/bin/msgfmt
checking for xgettext... (cached) /usr/local/bin/xgettext
checking whether build environment is sane... yes
checking for acos in -lm... yes
checking for main in -lblas... yes
checking for main in -llapack... yes
checking for sc-config... /usr/local/bin/sc-config
checking SC - version... Segmentation fault (core dumped)
no
*** Could not run SC test program, checking why...
*** The test program compiled, but did not run. This usually means
*** that the run-time linker is not finding SC or finding the wrong
*** version of SC. If it is not finding SC, you'll need to set your
*** LD_LIBRARY_PATH environment variable, or edit /etc/ld.so.conf to point
*** to the installed location  Also, make sure you have run ldconfig if that
*** is required on your system
***
*** If you have an old version installed, it is best to remove it, although
*** you may also be able to get things to work by modifying LD_LIBRARY_PATH
***
*** If you have a RedHat 5.0 system, you should remove the SC package that
*** came with the system with the command
***
***    rpm --erase --nodeps sc sc-devel
configure: error: Cannot find proper SC version
===>  Script "configure" failed unexpectedly.
Please report the problem to m...@freebsd.org [maintainer] and attach the
"/wrkdirs/usr/ports/science/libghemical/work/libghemical-3.0.0/config.log"
including the output of the failure of your make command. Also, it might be
a good idea to provide an overview of all packages installed on your system
(e.g. a /usr/local/sbin/pkg-static info -g -Ea).
*** Error code 1

Stop.
make: stopped in /usr/ports/science/libghemical
===>  Cleaning for libghemical-3.0.0_1
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