You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     pyt...@freebsd.org
Last committer: anto...@freebsd.org
Ident:          $FreeBSD: branches/2018Q1/biology/pycogent/Makefile 456050 
2017-12-11 16:54:20Z antoine $
Log URL:        
http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/462367/logs/pycogent-1.9.log
Build URL:      
http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=462367
Log:

=>> Building biology/pycogent
build started at Tue Feb 20 04:45:22 UTC 2018
port directory: /usr/ports/biology/pycogent
package name: pycogent-1.9
building for: FreeBSD 111armv6-quarterly-job-07 11.1-RELEASE-p6 FreeBSD 
11.1-RELEASE-p6 1101001 arm
maintained by: pyt...@freebsd.org
Makefile ident:      $FreeBSD: branches/2018Q1/biology/pycogent/Makefile 456050 
2017-12-11 16:54:20Z antoine $
Poudriere version: 3.2.4-56-g0fd5b0e3
Host OSVERSION: 1200054
Jail OSVERSION: 1101001
Job Id: 07

---Begin Environment---
POUDRIEREPATH=/usr/local/bin/poudriere
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/111armv6-quarterly/ref/.p
SCRIPTPREFIX=/usr/local/share/poudriere
MASTERNAME=111armv6-quarterly
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
PWD=/usr/local/poudriere/data/.m/111armv6-quarterly/ref/.p/pool
SAVED_TERM=
PACKAGE_BUILDING=yes
POUDRIERE_BUILD_TYPE=bulk
MASTERMNT=/usr/local/poudriere/data/.m/111armv6-quarterly/ref
POUDRIERE_VERSION=3.2.4-56-g0fd5b0e3
LIBEXECPREFIX=/usr/local/libexec/poudriere
USER=root
QEMU_EMULATING=1
LOCALBASE=/usr/local
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
HOME=/root
STATUS=1
MAIL=/var/mail/root
BLOCKSIZE=K
UNAME_r=11.1-RELEASE-p6
UNAME_v=FreeBSD 11.1-RELEASE-p6 1101001
OSVERSION=1101001
ABI_FILE=/usr/lib/crt1.o
UNAME_m=arm
UNAME_p=armv6
SHELL=/bin/csh
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py27
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py27
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
pyt...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27  
HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/pycogent/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27  
HOME=/wrkdirs/usr/ports/biology/pycogent/work-py27 TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/pycogent/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PYTHON_INCLUDEDIR=include/python2.7  PYTHON_LIBDIR=lib/python2.7  
PYTHON_PLATFORM=freebsd11  PYTHON_PYOEXTENSION=pyo  
PYTHON_SITELIBDIR=lib/python2.7/site-packages  PYTHON_SUFFIX=27  PYTHON_VER=2.7 
 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=11.1 PREFIX=%D 
LOCALBASE=/usr/local  RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" 
LIB32DIR=lib DOCSDIR="share/doc/pycogent"  
EXAMPLESDIR="share/examples/pycogent"  DATADIR="share/pycogent"  
WWWDIR="www/pycogent"  ETCDIR="etc/pycogent"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/pycogent 
DOCSDIR=/usr/local/share/doc/pycogent 
EXAMPLESDIR=/usr/local/share/examples/pycogent  WWWDIR=/usr/local/www/pycogent 
ETCDIR=/usr/local/etc/pycogent
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
ARCH=armv6
CONFIGURE_MAX_CMD_LEN=262144
OPSYS=FreeBSD
OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
UID=0
_OSRELEASE=11.1-RELEASE-p6
#### Misc Poudriere ####
GID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   pycogent-1.9 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.3_1.txz
[111armv6-quarterly-job-07] Installing pkg-1.10.3_1...
[111armv6-quarterly-job-07] Extracting pkg-1.10.3_1: .......... done
===>   pycogent-1.9 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pycogent-1.9
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by pycogent-1.9 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by pycogent-1.9 for building
=> SHA256 Checksum OK for pycogent-pycogent-1.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by pycogent-1.9 for building
===>  Extracting for pycogent-1.9
=> SHA256 Checksum OK for pycogent-pycogent-1.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for pycogent-1.9
===========================================================================
=======================<phase: build-depends  >============================
===>   pycogent-1.9 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.13.3,1.txz
[111armv6-quarterly-job-07] Installing py27-numpy-1.13.3,1...
[111armv6-quarterly-job-07] `-- Installing blas-3.5.0_3...
[111armv6-quarterly-job-07] |   `-- Installing gcc6-6.4.0_3...
[111armv6-quarterly-job-07] |   | `-- Installing binutils-2.28,1...
[111armv6-quarterly-job-07] |   |   `-- Installing gettext-runtime-0.19.8.1_1...
[111armv6-quarterly-job-07] |   |   | `-- Installing indexinfo-0.3.1...
[111armv6-quarterly-job-07] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[111armv6-quarterly-job-07] |   |   `-- Extracting gettext-runtime-0.19.8.1_1: 
.......... done
[111armv6-quarterly-job-07] |   | `-- Extracting binutils-2.28,1: .......... 
done
[111armv6-quarterly-job-07] |   | `-- Installing gmp-6.1.2...
[111armv6-quarterly-job-07] |   | `-- Extracting gmp-6.1.2: .......... done
[111armv6-quarterly-job-07] |   | `-- Installing mpc-1.0.3...
[111armv6-quarterly-job-07] |   |   `-- Installing mpfr-3.1.6...
[111armv6-quarterly-job-07] |   |   `-- Extracting mpfr-3.1.6: .......... done
[111armv6-quarterly-job-07] |   | `-- Extracting mpc-1.0.3: ...... done
[111armv6-quarterly-job-07] |   `-- Extracting gcc6-6.4.0_3: .......... done
[111armv6-quarterly-job-07] `-- Extracting blas-3.5.0_3: ....... done
[111armv6-quarterly-job-07] `-- Installing cblas-1.0_7...
[111armv6-quarterly-job-07] `-- Extracting cblas-1.0_7: ......... done
[111armv6-quarterly-job-07] `-- Installing lapack-3.5.0_3...
[111armv6-quarterly-job-07] `-- Extracting lapack-3.5.0_3: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-setuptools-36.5.0...
[111armv6-quarterly-job-07] |   `-- Installing python27-2.7.14_1...
[111armv6-quarterly-job-07] |   | `-- Installing libffi-3.2.1_2...
[111armv6-quarterly-job-07] |   | `-- Extracting libffi-3.2.1_2: .......... done
[111armv6-quarterly-job-07] |   | `-- Installing readline-7.0.3_1...
[111armv6-quarterly-job-07] |   | `-- Extracting readline-7.0.3_1: .......... 
done
[111armv6-quarterly-job-07] |   `-- Extracting python27-2.7.14_1: .......... 
done
[111armv6-quarterly-job-07] `-- Extracting py27-setuptools-36.5.0: .......... 
done
[111armv6-quarterly-job-07] `-- Installing suitesparse-4.0.2_7...
[111armv6-quarterly-job-07] |   `-- Installing openblas-0.2.20_1,1...
[111armv6-quarterly-job-07] |   `-- Extracting openblas-0.2.20_1,1: ......... 
done
[111armv6-quarterly-job-07] `-- Extracting suitesparse-4.0.2_7: .......... done
[111armv6-quarterly-job-07] Extracting py27-numpy-1.13.3,1: .......... done
Message from gcc6-6.4.0_3:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc6

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_7:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.14_1:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
===>   pycogent-1.9 depends on package: py27-numpy>0 - found
===>   Returning to build of pycogent-1.9
===>   pycogent-1.9 depends on package: py27-sphinx>=0 - not found
===>   Installing existing package /packages/All/py27-sphinx-1.4.8_2,1.txz
[111armv6-quarterly-job-07] Installing py27-sphinx-1.4.8_2,1...
[111armv6-quarterly-job-07] `-- Installing ca_root_nss-3.35...
[111armv6-quarterly-job-07] `-- Extracting ca_root_nss-3.35: ........ done
[111armv6-quarterly-job-07] `-- Installing py27-Babel-2.5.1...
[111armv6-quarterly-job-07] |   `-- Installing py27-pytz-2017.3,1...
[111armv6-quarterly-job-07] |   `-- Extracting py27-pytz-2017.3,1: .......... 
done
[111armv6-quarterly-job-07] `-- Extracting py27-Babel-2.5.1: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-Jinja2-2.10...
[111armv6-quarterly-job-07] |   `-- Installing py27-MarkupSafe-1.0...
[111armv6-quarterly-job-07] |   `-- Extracting py27-MarkupSafe-1.0: .......... 
done
[111armv6-quarterly-job-07] `-- Extracting py27-Jinja2-2.10: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-alabaster-0.7.6...
[111armv6-quarterly-job-07] `-- Extracting py27-alabaster-0.7.6: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-docutils-0.14_1...
[111armv6-quarterly-job-07] `-- Extracting py27-docutils-0.14_1: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-imagesize-0.7.1...
[111armv6-quarterly-job-07] `-- Extracting py27-imagesize-0.7.1: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-pygments-2.2.0...
[111armv6-quarterly-job-07] `-- Extracting py27-pygments-2.2.0: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-six-1.11.0...
[111armv6-quarterly-job-07] `-- Extracting py27-six-1.11.0: .......... done
[111armv6-quarterly-job-07] `-- Installing py27-snowballstemmer-1.2.0_1...
[111armv6-quarterly-job-07] |   `-- Installing py27-pystemmer-1.3.0_1...
[111armv6-quarterly-job-07] |   `-- Extracting py27-pystemmer-1.3.0_1: 
......... done
[111armv6-quarterly-job-07] `-- Extracting py27-snowballstemmer-1.2.0_1: 
.......... done
[111armv6-quarterly-job-07] `-- Installing py27-sphinx_rtd_theme-0.2.4...
[111armv6-quarterly-job-07] `-- Extracting py27-sphinx_rtd_theme-0.2.4: 
.......... done
[111armv6-quarterly-job-07] Extracting py27-sphinx-1.4.8_2,1: .......... done
Message from ca_root_nss-3.35:

********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   pycogent-1.9 depends on package: py27-sphinx>=0 - found
===>   Returning to build of pycogent-1.9
===>   pycogent-1.9 depends on package: py27-sqlalchemy10>=1.0.13 - not found
===>   Installing existing package /packages/All/py27-sqlalchemy10-1.0.14.txz
[111armv6-quarterly-job-07] Installing py27-sqlalchemy10-1.0.14...
[111armv6-quarterly-job-07] `-- Installing py27-sqlite3-2.7.14_7...
[111armv6-quarterly-job-07] |   `-- Installing sqlite3-3.21.0_1...
[111armv6-quarterly-job-07] |   `-- Extracting sqlite3-3.21.0_1: .......... done
[111armv6-quarterly-job-07] `-- Extracting py27-sqlite3-2.7.14_7: ........ done
[111armv6-quarterly-job-07] Extracting py27-sqlalchemy10-1.0.14: .......... done
===>   pycogent-1.9 depends on package: py27-sqlalchemy10>=1.0.13 - found
===>   Returning to build of pycogent-1.9
===>   pycogent-1.9 depends on executable: cython-2.7 - not found
===>   Installing existing package /packages/All/py27-cython-0.26.txz
[111armv6-quarterly-job-07] Installing py27-cython-0.26...
[111armv6-quarterly-job-07] Extracting py27-cython-0.26: .......... done
===>   pycogent-1.9 depends on executable: cython-2.7 - found
===>   Returning to build of pycogent-1.9
===>   pycogent-1.9 depends on package: py27-setuptools>0 - found
===>   pycogent-1.9 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for pycogent-1.9
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 26, in <module>
    raise RuntimeError("Numpy required but not found.")
RuntimeError: Numpy required but not found.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/pycogent
_______________________________________________
freebsd-pkg-fallout@freebsd.org mailing list
https://lists.freebsd.org/mailman/listinfo/freebsd-pkg-fallout
To unsubscribe, send any mail to "freebsd-pkg-fallout-unsubscr...@freebsd.org"

Reply via email to