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Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: head/biology/py-macs2/Makefile 464084 2018-03-10 
17:46:04Z gerald $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p466276_s331900/logs/py27-macs2-2.1.0.p20170505_1.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p466276_s331900
Log:

=>> Building biology/py-macs2
build started at Thu Apr  5 07:43:51 UTC 2018
port directory: /usr/ports/biology/py-macs2
package name: py27-macs2-2.1.0.p20170505_1
building for: FreeBSD head-armv6-default-job-06 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200060 arm
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/py-macs2/Makefile 464084 2018-03-10 
17:46:04Z gerald $
Poudriere version: 3.2.6
Host OSVERSION: 1200060
Jail OSVERSION: 1200060
Job Id: 06

---Begin Environment---
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UNAME_p=armv6
UNAME_m=arm
ABI_FILE=/usr/lib/crt1.o
OSVERSION=1200060
UNAME_v=FreeBSD 12.0-CURRENT 1200060
UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
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SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
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OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=py27
DEPENDS_ARGS=
MAKE_ARGS= FLAVOR=py27
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
PYTHON="/usr/local/bin/python2.7" 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py27  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py27  
HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py27 TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/py-macs2/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py27  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py27  
HOME=/wrkdirs/usr/ports/biology/py-macs2/work-py27 TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/py-macs2/work-py27/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" PYTHON_INCLUDEDIR=include/python2.7  
PYTHON_LIBDIR=lib/python2.7  PYTHON_PLATFORM=freebsd12  PYTHON_PYOEXTENSION=pyo 
 PYTHON_SITELIBDIR=lib/python2.7/site-packages  PYTHON_SUFFIX=27  
PYTHON_VER=2.7  PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " 
OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib 
DOCSDIR="share/doc/py27-macs2"  EXAMPLESDIR="share/examples/py27-macs2"  
DATADIR="share/py27-macs2"  WWWDIR="www/py27-macs2"  ETCDIR="etc/py27-macs2"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/py27-macs2 
DOCSDIR=/usr/local/share/doc/py27-macs2 
EXAMPLESDIR=/usr/local/share/examples/py27-macs2  
WWWDIR=/usr/local/www/py27-macs2 ETCDIR=/usr/local/etc/py27-macs2
--End SUB_LIST--

---Begin make.conf---
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USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
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PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
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# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
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"/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" 
"--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" 
"--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
_OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.0 (tags/RELEASE_600/final 
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Thread model: posix InstalledDir: /nxb-bin/usr/bin
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ARCH=armv6
OPSYS=FreeBSD
_OSRELEASE=12.0-CURRENT
OSREL=12.0
OSVERSION=1200060
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-macs2-2.1.0.p20170505_1 depends on file: /usr/local/sbin/pkg - not 
found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[head-armv6-default-job-06] Installing pkg-1.10.5...
[head-armv6-default-job-06] Extracting pkg-1.10.5: .......... done
===>   py27-macs2-2.1.0.p20170505_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-macs2-2.1.0.p20170505_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-macs2-2.1.0.p20170505_1 for 
building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-macs2-2.1.0.p20170505_1 for 
building
=> SHA256 Checksum OK for taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-macs2-2.1.0.p20170505_1 for 
building
===>  Extracting for py27-macs2-2.1.0.p20170505_1
=> SHA256 Checksum OK for taoliu-MACS-2.1.0.p20170505-6946b2f_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py27-macs2-2.1.0.p20170505_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py27-macs2-2.1.0.p20170505_1 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.13.3_2,1.txz
[head-armv6-default-job-06] Installing py27-numpy-1.13.3_2,1...
[head-armv6-default-job-06] `-- Installing blas-3.5.0_4...
[head-armv6-default-job-06] |   `-- Installing gcc6-6.4.0_4...
[head-armv6-default-job-06] |   | `-- Installing binutils-2.30_2,1...
[head-armv6-default-job-06] |   |   `-- Installing gettext-runtime-0.19.8.1_1...
[head-armv6-default-job-06] |   |   | `-- Installing indexinfo-0.3.1...
[head-armv6-default-job-06] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[head-armv6-default-job-06] |   |   `-- Extracting gettext-runtime-0.19.8.1_1: 
.......... done
[head-armv6-default-job-06] |   | `-- Extracting binutils-2.30_2,1: .......... 
done
[head-armv6-default-job-06] |   | `-- Installing gmp-6.1.2...
[head-armv6-default-job-06] |   | `-- Extracting gmp-6.1.2: .......... done
[head-armv6-default-job-06] |   | `-- Installing mpc-1.1.0...
[head-armv6-default-job-06] |   |   `-- Installing mpfr-3.1.6...
[head-armv6-default-job-06] |   |   `-- Extracting mpfr-3.1.6: .......... done
[head-armv6-default-job-06] |   | `-- Extracting mpc-1.1.0: ...... done
[head-armv6-default-job-06] |   `-- Extracting gcc6-6.4.0_4: .......... done
[head-armv6-default-job-06] `-- Extracting blas-3.5.0_4: ....... done
[head-armv6-default-job-06] `-- Installing cblas-1.0_8...
[head-armv6-default-job-06] `-- Extracting cblas-1.0_8: ......... done
[head-armv6-default-job-06] `-- Installing lapack-3.5.0_4...
[head-armv6-default-job-06] `-- Extracting lapack-3.5.0_4: .......... done
[head-armv6-default-job-06] `-- Installing py27-setuptools-39.0.1...
[head-armv6-default-job-06] |   `-- Installing python27-2.7.14_1...
[head-armv6-default-job-06] |   | `-- Installing libffi-3.2.1_2...
[head-armv6-default-job-06] |   | `-- Extracting libffi-3.2.1_2: .......... done
[head-armv6-default-job-06] |   | `-- Installing readline-7.0.3_1...
[head-armv6-default-job-06] |   | `-- Extracting readline-7.0.3_1: .......... 
done
[head-armv6-default-job-06] |   `-- Extracting python27-2.7.14_1: .......... 
done
[head-armv6-default-job-06] `-- Extracting py27-setuptools-39.0.1: .......... 
done
[head-armv6-default-job-06] `-- Installing suitesparse-4.0.2_8...
[head-armv6-default-job-06] |   `-- Installing openblas-0.2.20_2,1...
[head-armv6-default-job-06] |   `-- Extracting openblas-0.2.20_2,1: ......... 
done
[head-armv6-default-job-06] `-- Extracting suitesparse-4.0.2_8: .......... done
[head-armv6-default-job-06] Extracting py27-numpy-1.13.3_2,1: .......... done
Message from gcc6-6.4.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc6

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_8:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.14_1:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
===>   py27-macs2-2.1.0.p20170505_1 depends on package: py27-numpy>0 - found
===>   Returning to build of py27-macs2-2.1.0.p20170505_1
===>   py27-macs2-2.1.0.p20170505_1 depends on executable: cython-2.7 - not 
found
===>   Installing existing package /packages/All/py27-cython-0.26.txz
[head-armv6-default-job-06] Installing py27-cython-0.26...
[head-armv6-default-job-06] Extracting py27-cython-0.26: .......... done
===>   py27-macs2-2.1.0.p20170505_1 depends on executable: cython-2.7 - found
===>   Returning to build of py27-macs2-2.1.0.p20170505_1
===>   py27-macs2-2.1.0.p20170505_1 depends on package: py27-setuptools>0 - 
found
===>   py27-macs2-2.1.0.p20170505_1 depends on file: /usr/local/bin/python2.7 - 
found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py27-macs2-2.1.0.p20170505_1
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup_w_cython.py", line 117, in <module>
    main()
  File "setup_w_cython.py", line 64, in main
    Extension("MACS2.hashtable", ["MACS2/hashtable.pyx"], 
include_dirs=["MACS2/",numpy_get_include()], extra_compile_args=extra_c_args),
NameError: global name 'numpy_get_include' is not defined
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/py-macs2
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