You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     pyt...@freebsd.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: branches/2018Q2/biology/pycogent/Makefile 464084 
2018-03-10 17:46:04Z gerald $
Log URL:        
http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/466932/logs/pycogent-1.9_1.log
Build URL:      
http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=466932
Log:

=>> Building biology/pycogent
build started at Tue Apr 10 14:17:00 UTC 2018
port directory: /usr/ports/biology/pycogent
package name: pycogent-1.9_1
building for: FreeBSD 111armv6-quarterly-job-06 11.1-RELEASE-p6 FreeBSD 
11.1-RELEASE-p6 1101001 arm
maintained by: pyt...@freebsd.org
Makefile ident:      $FreeBSD: branches/2018Q2/biology/pycogent/Makefile 464084 
2018-03-10 17:46:04Z gerald $
Poudriere version: 3.2.6-1-ga0ae87a0
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pyt...@freebsd.org
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--CONFIGURE_ARGS--

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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   pycogent-1.9_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[111armv6-quarterly-job-06] Installing pkg-1.10.5...
[111armv6-quarterly-job-06] Extracting pkg-1.10.5: .......... done
===>   pycogent-1.9_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pycogent-1.9_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by pycogent-1.9_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by pycogent-1.9_1 for building
=> SHA256 Checksum OK for pycogent-pycogent-1.9_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by pycogent-1.9_1 for building
===>  Extracting for pycogent-1.9_1
=> SHA256 Checksum OK for pycogent-pycogent-1.9_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for pycogent-1.9_1
===========================================================================
=======================<phase: build-depends  >============================
===>   pycogent-1.9_1 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.13.3_2,1.txz
[111armv6-quarterly-job-06] Installing py27-numpy-1.13.3_2,1...
[111armv6-quarterly-job-06] `-- Installing blas-3.5.0_4...
[111armv6-quarterly-job-06] |   `-- Installing gcc6-6.4.0_4...
[111armv6-quarterly-job-06] |   | `-- Installing binutils-2.30_2,1...
[111armv6-quarterly-job-06] |   |   `-- Installing gettext-runtime-0.19.8.1_1...
[111armv6-quarterly-job-06] |   |   | `-- Installing indexinfo-0.3.1...
[111armv6-quarterly-job-06] |   |   | `-- Extracting indexinfo-0.3.1: .... done
[111armv6-quarterly-job-06] |   |   `-- Extracting gettext-runtime-0.19.8.1_1: 
.......... done
[111armv6-quarterly-job-06] |   | `-- Extracting binutils-2.30_2,1: .......... 
done
[111armv6-quarterly-job-06] |   | `-- Installing gmp-6.1.2...
[111armv6-quarterly-job-06] |   | `-- Extracting gmp-6.1.2: .......... done
[111armv6-quarterly-job-06] |   | `-- Installing mpc-1.1.0...
[111armv6-quarterly-job-06] |   |   `-- Installing mpfr-3.1.6...
[111armv6-quarterly-job-06] |   |   `-- Extracting mpfr-3.1.6: .......... done
[111armv6-quarterly-job-06] |   | `-- Extracting mpc-1.1.0: ...... done
[111armv6-quarterly-job-06] |   `-- Extracting gcc6-6.4.0_4: .......... done
[111armv6-quarterly-job-06] `-- Extracting blas-3.5.0_4: ....... done
[111armv6-quarterly-job-06] `-- Installing cblas-1.0_8...
[111armv6-quarterly-job-06] `-- Extracting cblas-1.0_8: ......... done
[111armv6-quarterly-job-06] `-- Installing lapack-3.5.0_4...
[111armv6-quarterly-job-06] `-- Extracting lapack-3.5.0_4: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-setuptools-39.0.1...
[111armv6-quarterly-job-06] |   `-- Installing python27-2.7.14_1...
[111armv6-quarterly-job-06] |   | `-- Installing libffi-3.2.1_2...
[111armv6-quarterly-job-06] |   | `-- Extracting libffi-3.2.1_2: .......... done
[111armv6-quarterly-job-06] |   | `-- Installing readline-7.0.3_1...
[111armv6-quarterly-job-06] |   | `-- Extracting readline-7.0.3_1: .......... 
done
[111armv6-quarterly-job-06] |   `-- Extracting python27-2.7.14_1: .......... 
done
[111armv6-quarterly-job-06] `-- Extracting py27-setuptools-39.0.1: .......... 
done
[111armv6-quarterly-job-06] `-- Installing suitesparse-4.0.2_8...
[111armv6-quarterly-job-06] |   `-- Installing openblas-0.2.20_2,1...
[111armv6-quarterly-job-06] |   `-- Extracting openblas-0.2.20_2,1: ......... 
done
[111armv6-quarterly-job-06] `-- Extracting suitesparse-4.0.2_8: .......... done
[111armv6-quarterly-job-06] Extracting py27-numpy-1.13.3_2,1: .......... done
Message from gcc6-6.4.0_4:

To ensure binaries built with this toolchain find appropriate versions
of the necessary run-time libraries, you may want to link using

  -Wl,-rpath=/usr/local/lib/gcc6

For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens
transparently.
Message from cblas-1.0_8:

===>   NOTICE:

The cblas port currently does not have a maintainer. As a result, it is
more likely to have unresolved issues, not be up-to-date, or even be removed in
the future. To volunteer to maintain this port, please create an issue at:

https://bugs.freebsd.org/bugzilla

More information about port maintainership is available at:

https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port
Message from python27-2.7.14_1:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
===>   pycogent-1.9_1 depends on package: py27-numpy>0 - found
===>   Returning to build of pycogent-1.9_1
===>   pycogent-1.9_1 depends on package: py27-sphinx>=0 - not found
===>   Installing existing package /packages/All/py27-sphinx-1.6.5_1,1.txz
[111armv6-quarterly-job-06] Installing py27-sphinx-1.6.5_1,1...
[111armv6-quarterly-job-06] `-- Installing ca_root_nss-3.36.1...
[111armv6-quarterly-job-06] `-- Extracting ca_root_nss-3.36.1: ........ done
[111armv6-quarterly-job-06] `-- Installing py27-Babel-2.5.1...
[111armv6-quarterly-job-06] |   `-- Installing py27-pytz-2018.3,1...
[111armv6-quarterly-job-06] |   `-- Extracting py27-pytz-2018.3,1: .......... 
done
[111armv6-quarterly-job-06] `-- Extracting py27-Babel-2.5.1: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-Jinja2-2.10...
[111armv6-quarterly-job-06] |   `-- Installing py27-MarkupSafe-1.0...
[111armv6-quarterly-job-06] |   `-- Extracting py27-MarkupSafe-1.0: .......... 
done
[111armv6-quarterly-job-06] `-- Extracting py27-Jinja2-2.10: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-alabaster-0.7.6...
[111armv6-quarterly-job-06] `-- Extracting py27-alabaster-0.7.6: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-docutils-0.14_1...
[111armv6-quarterly-job-06] `-- Extracting py27-docutils-0.14_1: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-imagesize-0.7.1...
[111armv6-quarterly-job-06] `-- Extracting py27-imagesize-0.7.1: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-pygments-2.2.0...
[111armv6-quarterly-job-06] `-- Extracting py27-pygments-2.2.0: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-requests-2.18.4...
[111armv6-quarterly-job-06] |   `-- Installing py27-certifi-2018.1.18...
[111armv6-quarterly-job-06] |   `-- Extracting py27-certifi-2018.1.18: 
.......... done
[111armv6-quarterly-job-06] |   `-- Installing py27-chardet-3.0.4...
[111armv6-quarterly-job-06] |   `-- Extracting py27-chardet-3.0.4: .......... 
done
[111armv6-quarterly-job-06] |   `-- Installing py27-idna-2.6...
[111armv6-quarterly-job-06] |   `-- Extracting py27-idna-2.6: .......... done
[111armv6-quarterly-job-06] |   `-- Installing py27-urllib3-1.22...
[111armv6-quarterly-job-06] |   | `-- Installing py27-cryptography-2.1.4...
[111armv6-quarterly-job-06] |   |   `-- Installing py27-asn1crypto-0.22.0...
[111armv6-quarterly-job-06] |   |   `-- Extracting py27-asn1crypto-0.22.0: 
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[111armv6-quarterly-job-06] |   |   `-- Installing py27-cffi-1.11.2...
[111armv6-quarterly-job-06] |   |   | `-- Installing py27-pycparser-2.18...
[111armv6-quarterly-job-06] |   |   | `-- Extracting py27-pycparser-2.18: 
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[111armv6-quarterly-job-06] |   |   `-- Extracting py27-cffi-1.11.2: .......... 
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[111armv6-quarterly-job-06] |   |   `-- Installing py27-enum34-1.1.6...
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[111armv6-quarterly-job-06] |   |   `-- Installing py27-ipaddress-1.0.19...
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[111armv6-quarterly-job-06] |   |   `-- Installing py27-six-1.11.0...
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[111armv6-quarterly-job-06] |   | `-- Extracting py27-cryptography-2.1.4: 
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[111armv6-quarterly-job-06] |   | `-- Installing py27-openssl-17.5.0_1...
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[111armv6-quarterly-job-06] |   | `-- Installing py27-pysocks-1.6.8...
[111armv6-quarterly-job-06] |   | `-- Extracting py27-pysocks-1.6.8: .......... 
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[111armv6-quarterly-job-06] |   `-- Extracting py27-urllib3-1.22: .......... 
done
[111armv6-quarterly-job-06] `-- Extracting py27-requests-2.18.4: .......... done
[111armv6-quarterly-job-06] `-- Installing py27-snowballstemmer-1.2.0_1...
[111armv6-quarterly-job-06] |   `-- Installing py27-pystemmer-1.3.0_1...
[111armv6-quarterly-job-06] |   `-- Extracting py27-pystemmer-1.3.0_1: 
......... done
[111armv6-quarterly-job-06] `-- Extracting py27-snowballstemmer-1.2.0_1: 
.......... done
[111armv6-quarterly-job-06] `-- Installing py27-sphinx_rtd_theme-0.2.4...
[111armv6-quarterly-job-06] `-- Extracting py27-sphinx_rtd_theme-0.2.4: 
.......... done
[111armv6-quarterly-job-06] `-- Installing 
py27-sphinxcontrib-websupport-1.0.1...
[111armv6-quarterly-job-06] `-- Extracting py27-sphinxcontrib-websupport-1.0.1: 
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[111armv6-quarterly-job-06] `-- Installing py27-typing-3.6.4...
[111armv6-quarterly-job-06] `-- Extracting py27-typing-3.6.4: .......... done
[111armv6-quarterly-job-06] Extracting py27-sphinx-1.6.5_1,1: .......... done
Message from ca_root_nss-3.36.1:

********************************* WARNING *********************************

FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
Message from py27-urllib3-1.22:

Be careful, support of IPv6 is broken with PySocks 1.5.7.
===>   pycogent-1.9_1 depends on package: py27-sphinx>=0 - found
===>   Returning to build of pycogent-1.9_1
===>   pycogent-1.9_1 depends on package: py27-sqlalchemy10>=1.0.13 - not found
===>   Installing existing package /packages/All/py27-sqlalchemy10-1.0.14.txz
[111armv6-quarterly-job-06] Installing py27-sqlalchemy10-1.0.14...
[111armv6-quarterly-job-06] `-- Installing py27-sqlite3-2.7.14_7...
[111armv6-quarterly-job-06] |   `-- Installing sqlite3-3.22.0_2...
[111armv6-quarterly-job-06] |   `-- Extracting sqlite3-3.22.0_2: .......... done
[111armv6-quarterly-job-06] `-- Extracting py27-sqlite3-2.7.14_7: ........ done
[111armv6-quarterly-job-06] Extracting py27-sqlalchemy10-1.0.14: .......... done
===>   pycogent-1.9_1 depends on package: py27-sqlalchemy10>=1.0.13 - found
===>   Returning to build of pycogent-1.9_1
===>   pycogent-1.9_1 depends on executable: cython-2.7 - not found
===>   Installing existing package /packages/All/py27-cython-0.26.txz
[111armv6-quarterly-job-06] Installing py27-cython-0.26...
[111armv6-quarterly-job-06] Extracting py27-cython-0.26: .......... done
===>   pycogent-1.9_1 depends on executable: cython-2.7 - found
===>   Returning to build of pycogent-1.9_1
===>   pycogent-1.9_1 depends on package: py27-setuptools>0 - found
===>   pycogent-1.9_1 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for pycogent-1.9_1
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "setup.py", line 26, in <module>
    raise RuntimeError("Numpy required but not found.")
RuntimeError: Numpy required but not found.
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/pycogent
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