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Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: j...@freebsd.org
Ident:          $FreeBSD: head/biology/pear-merger/Makefile 466449 2018-04-04 
17:21:39Z jwb $
Log URL:        
http://beefy8.nyi.freebsd.org/data/head-armv6-default/p466702_s332158/logs/pear-merger-0.9.6.log
Build URL:      
http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p466702_s332158
Log:

=>> Building biology/pear-merger
build started at Tue Apr 10 20:53:58 UTC 2018
port directory: /usr/ports/biology/pear-merger
package name: pear-merger-0.9.6
building for: FreeBSD head-armv6-default-job-23 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200061 arm
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/pear-merger/Makefile 466449 
2018-04-04 17:21:39Z jwb $
Poudriere version: 3.2.6-1-ga0ae87a0
Host OSVERSION: 1200060
Jail OSVERSION: 1200061
Job Id: 23




!!! Jail is newer than host. (Jail: 1200061, Host: 1200060) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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UNAME_r=12.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
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HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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LIBEXECPREFIX=/usr/local/libexec/poudriere
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POUDRIERE_BUILD_TYPE=bulk
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SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool
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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pear-merger/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pear-merger/work  
HOME=/wrkdirs/usr/ports/biology/pear-merger/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/pear-merger/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/pear-merger/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/pear-merger/work  
HOME=/wrkdirs/usr/ports/biology/pear-merger/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/pear-merger/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  LIBDIR="/usr/lib"  
CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe  -fno-strict-aliasing"  
CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing "  
MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  
BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  
BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/pear"  
EXAMPLESDIR="share/examples/pear"  DATADIR="share/pear"  WWWDIR="www/pear"  
ETCDIR="etc/pear"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/pear 
DOCSDIR=/usr/local/share/doc/pear EXAMPLESDIR=/usr/local/share/examples/pear  
WWWDIR=/usr/local/www/pear ETCDIR=/usr/local/etc/pear
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BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License CC-BY-NC-SA-3.0 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   pear-merger-0.9.6 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[head-armv6-default-job-23] Installing pkg-1.10.5...
[head-armv6-default-job-23] Extracting pkg-1.10.5: .......... done
===>   pear-merger-0.9.6 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of pear-merger-0.9.6
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License CC-BY-NC-SA-3.0 accepted by the user
=> pear_0.9.6_src_all.tar.gz doesn't seem to exist in /portdistfiles/.
=> Attempting to fetch 
https://depot.galaxyproject.org/software/pear/pear_0.9.6_src_all.tar.gz
pear_0.9.6_src_all.tar.gz                                0  B    0  Bps
===> Fetching all distfiles required by pear-merger-0.9.6 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License CC-BY-NC-SA-3.0 accepted by the user
===> Fetching all distfiles required by pear-merger-0.9.6 for building
=> SHA256 Checksum OK for pear_0.9.6_src_all.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License CC-BY-NC-SA-3.0 accepted by the user
===> Fetching all distfiles required by pear-merger-0.9.6 for building
===>  Extracting for pear-merger-0.9.6
=> SHA256 Checksum OK for pear_0.9.6_src_all.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for pear-merger-0.9.6
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for pear-merger-0.9.6
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
test: -O2: unexpected operator
checking for gcc... /nxb-bin/usr/bin/cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether /nxb-bin/usr/bin/cc accepts -g... yes
checking for /nxb-bin/usr/bin/cc option to accept ISO C89... none needed
checking whether /nxb-bin/usr/bin/cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of /nxb-bin/usr/bin/cc... gcc3
checking for log in -lm... yes
checking for main in -lpthread... yes
checking how to run the C preprocessor... /nxb-bin/usr/bin/cpp
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for inline... inline
checking for size_t... (cached) yes
checking for uint32_t... (cached) yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... (cached) yes
checking for working strtod... (cached) yes
checking for memmove... (cached) yes
checking for pow... yes
checking for strtol... (cached) yes
checking for library containing pthread_create... none required
checking for library containing BZ2_bzCompress... -lbz2
checking for library containing zlibVersion... -lz
checking for pthread.h... (cached) yes
checking bzlib.h usability... yes
checking bzlib.h presence... yes
checking for bzlib.h... yes
checking for zlib.h... (cached) yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating man/Makefile
config.status: creating src/config.h
config.status: executing depfiles commands
===========================================================================
=======================<phase: build          >============================
===>  Building for pear-merger-0.9.6
Making all in src
/nxb-bin/usr/bin/make  all-am
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.    -O3 -fomit-frame-pointer 
-funroll-loops -Wall -Wredundant-decls  -Wreturn-type  -Wswitch-default 
-Wimplicit  -Wimplicit-function-declaration  -Wimplicit-int -Wimport 
-Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast  
-Wmissing-declarations -Wmissing-prototypes  -Wnested-externs  
-Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra 
-Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value  
-Wunused-variable -Wformat  -Wformat-nonliteral -Wparentheses -Wsequence-point 
-Wuninitialized -Wundef -O2 -pipe  -fno-strict-aliasing -MT pear-pear-pt.o -MD 
-MP -MF .deps/pear-pear-pt.Tpo -c -o pear-pear-pt.o `test -f 'pear-pt.c' || 
echo './'`pear-pt.c
mv -f .deps/pear-pear-pt.Tpo .deps/pear-pear-pt.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.    -O3 -fomit-frame-pointer 
-funroll-loops -Wall -Wredundant-decls  -Wreturn-type  -Wswitch-default 
-Wimplicit  -Wimplicit-function-declaration  -Wimplicit-int -Wimport 
-Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast  
-Wmissing-declarations -Wmissing-prototypes  -Wnested-externs  
-Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra 
-Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value  
-Wunused-variable -Wformat  -Wformat-nonliteral -Wparentheses -Wsequence-point 
-Wuninitialized -Wundef -O2 -pipe  -fno-strict-aliasing -MT pear-args.o -MD -MP 
-MF .deps/pear-args.Tpo -c -o pear-args.o `test -f 'args.c' || echo './'`args.c
mv -f .deps/pear-args.Tpo .deps/pear-args.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.    -O3 -fomit-frame-pointer 
-funroll-loops -Wall -Wredundant-decls  -Wreturn-type  -Wswitch-default 
-Wimplicit  -Wimplicit-function-declaration  -Wimplicit-int -Wimport 
-Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast  
-Wmissing-declarations -Wmissing-prototypes  -Wnested-externs  
-Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra 
-Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value  
-Wunused-variable -Wformat  -Wformat-nonliteral -Wparentheses -Wsequence-point 
-Wuninitialized -Wundef -O2 -pipe  -fno-strict-aliasing -MT pear-statistics.o 
-MD -MP -MF .deps/pear-statistics.Tpo -c -o pear-statistics.o `test -f 
'statistics.c' || echo './'`statistics.c
mv -f .deps/pear-statistics.Tpo .deps/pear-statistics.Po
/nxb-bin/usr/bin/cc -DHAVE_CONFIG_H -I.    -O3 -fomit-frame-pointer 
-funroll-loops -Wall -Wredundant-decls  -Wreturn-type  -Wswitch-default 
-Wimplicit  -Wimplicit-function-declaration  -Wimplicit-int -Wimport 
-Wunused-label -Wno-int-to-pointer-cast -Wbad-function-cast  
-Wmissing-declarations -Wmissing-prototypes  -Wnested-externs  
-Wold-style-definition -Wstrict-prototypes -Wpointer-sign -Wextra 
-Wredundant-decls -Wunused -Wunused-function -Wunused-parameter -Wunused-value  
-Wunused-variable -Wformat  -Wformat-nonliteral -Wparentheses -Wsequence-point 
-Wuninitialized -Wundef -O2 -pipe  -fno-strict-aliasing -MT pear-reader.o -MD 
-MP -MF .deps/pear-reader.Tpo -c -o pear-reader.o `test -f 'reader.c' || echo 
'./'`reader.c
reader.c:969:9: error: invalid output constraint '=a' in asm
      : "=a" (data[0]),
        ^
1 error generated.
*** Error code 1

Stop.
make[3]: stopped in 
/wrkdirs/usr/ports/biology/pear-merger/work/pear-0.9.6-src/src
*** Error code 1

Stop.
make[2]: stopped in 
/wrkdirs/usr/ports/biology/pear-merger/work/pear-0.9.6-src/src
*** Error code 1

Stop.
make[1]: stopped in /wrkdirs/usr/ports/biology/pear-merger/work/pear-0.9.6-src
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/pear-merger
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