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Please investigate the failure and submit a PR to fix
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Maintainer:     h2+fbsdpo...@fsfe.org
Last committer: y...@freebsd.org
Ident:          $FreeBSD: branches/2018Q2/biology/seqan-apps/Makefile 464043 
2018-03-10 06:21:37Z yuri $
Log URL:        
http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/467550/logs/seqan-apps-2.4.0.log
Build URL:      
http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=467550
Log:

=>> Building biology/seqan-apps
build started at Tue Apr 17 02:19:18 UTC 2018
port directory: /usr/ports/biology/seqan-apps
package name: seqan-apps-2.4.0
building for: FreeBSD 111armv6-quarterly-job-10 11.1-RELEASE-p6 FreeBSD 
11.1-RELEASE-p6 1101001 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:      $FreeBSD: branches/2018Q2/biology/seqan-apps/Makefile 
464043 2018-03-10 06:21:37Z yuri $
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===> The following configuration options are available for seqan-apps-2.4.0:
====> Options available for the radio ARCH: you can only select none or one of 
them
     SSE4=off: Use SSE4 and POPCNT instructions
     AVX2=off: Use SSE4, AVX2 and POPCNT instructions
     NATIVE=off: Use all available instruction sets (-march=native)
===> Use 'make config' to modify these settings
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h2+fbsdpo...@fsfe.org
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--End CONFIGURE_ARGS--

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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   seqan-apps-2.4.0 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[111armv6-quarterly-job-10] Installing pkg-1.10.5...
[111armv6-quarterly-job-10] Extracting pkg-1.10.5: .......... done
===>   seqan-apps-2.4.0 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of seqan-apps-2.4.0
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0 for building
=> SHA256 Checksum OK for seqan-seqan-seqan-v2.4.0_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===> Fetching all distfiles required by seqan-apps-2.4.0 for building
===>  Extracting for seqan-apps-2.4.0
<snip>
[129/133] : && /usr/local/bin/g++6  -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 
-fno-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc6  -W -Wall -pedantic -O2 
-pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6  -Wl,-rpath=/usr/local/lib/gcc6 
-L/usr/local/lib/gcc6 -s -Wl,--whole-archive -lpthread -Wl,--no-whole-archive 
apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o  -o bin/tree_recon  
-lexecinfo -lelf && :
[130/133] /usr/local/bin/g++6  -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" 
-DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 
-DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 
-D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE 
-I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include -O2 
-pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6  -W -Wall -pedantic -fopenmp -O2 -pipe 
-Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT 
apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -MF 
apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o.d -o 
apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -c 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/yara/mapper.cpp
[131/133] : && /usr/local/bin/g++6  -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 
-fno-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc6  -W -Wall -pedantic 
-fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6  -Wl,-rpath=/usr/local/lib/gcc6 
-L/usr/local/lib/gcc6 -s -Wl,--whole-archive -lpthread -Wl,--no-whole-archive 
apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o  -o bin/yara_mapper  
-lexecinfo -lelf -lz -lbz2 && :
[132/133] /usr/local/bin/g++6  -DSEQAN_APP_VERSION=\"0.9.11\" -DSEQAN_DATE=\"\" 
-DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 
-DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 
-D_FILE_OFFSET_BITS=64 -D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE 
-I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include -O2 
-pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6  -W -Wall -pedantic -fopenmp -O2 -pipe 
-Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT 
apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -MF 
apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o.d -o 
apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -c 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/yara/indexer.cpp
[133/133] : && /usr/local/bin/g++6  -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 
-fno-strict-aliasing  -Wl,-rpath=/usr/local/lib/gcc6  -W -Wall -pedantic 
-fopenmp -O2 -pipe -Wl,-rpath=/usr/local/lib/gcc6 -fno-strict-aliasing  
-Wl,-rpath=/usr/local/lib/gcc6  -Wl,-rpath=/usr/local/lib/gcc6 
-L/usr/local/lib/gcc6 -s -Wl,--whole-archive -lpthread -Wl,--no-whole-archive 
apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o  -o bin/yara_indexer  
-lexecinfo -lelf -lz -lbz2 && :
===========================================================================
=======================<phase: run-depends    >============================
===>   seqan-apps-2.4.0 depends on executable: gcc6 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for seqan-apps-2.4.0
===>   Generating temporary packing list
[0/1] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && 
/usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/alf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/example/small.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bisar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/casbar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/four2three
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/bs_tools/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/bs_tools/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/dfi
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/example/fasta1.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/example/fasta2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/fx_bam_coverage
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fx_tools/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fx_tools/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gustaf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gustaf_mate_joining
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno_modified.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno_modified_reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/stellar.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/insegt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/annoOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/annotations.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/readOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/tupleOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_frag_sequencing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_genome
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_materializer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_methylation
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_simulator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_splicing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_variator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_frag_sequencing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_genome
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_materializer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_methylation
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_simulator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_splicing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_variator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/example/adeno_virus.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/micro_razers
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/reads.fa.result
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bam2roi
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_feature_projection
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_plot_thumbnails
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bed_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gff_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_plot_9.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/plot.awk
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/ps2pswLinks.gawk
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/dmel.bed
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/dmel.gtf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/example.bam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/R/ngsroi_0.1.tar.gz
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/R/ngsroi_0.1.zip
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/pair_align
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/pair_align/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/pair_align/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/param_chooser
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/param_chooser/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/param_chooser/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_prepare_sam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_build_gold_standard
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_evaluate
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_prepare_sam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_build_gold_standard
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_evaluate
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rabema/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rabema/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/razers
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/reads2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/razers3
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/reads2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rep_sep
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rep_sep/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rep_sep/README
[1/2] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=man > 
sak.1
FAILED: apps/sak/sak.1 
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=man > 
sak.1


stack trace:

[2/2] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=txt > 
README.sak.txt
FAILED: apps/sak/README.sak.txt 
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=txt > 
README.sak.txt


stack trace:

ninja: build stopped: subcommand failed.
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sak
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/README.sak.txt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/man/man1/sak.1
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sam2matrix
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sam2matrix/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sam2matrix/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/samcat
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/samcat/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/samcat/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/s4_search
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/s4_join
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/searchjoin/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/searchjoin/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/seqan_tcoffee
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/example/seq.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/seqcons2
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqcons2/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqcons2/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sgip
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_m2D_m196.A01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.A00
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.A01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.B00
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.B01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/latin-4
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/lattice-4
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/sts-7
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/snp_store
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/example/exampleGenome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/example/exampleReads.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/stellar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/NC_001474.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/NC_001477.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/reads.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/tree_recon
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/example/example.dist
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/yara_indexer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/yara_mapper
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/yara/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/yara/README.rst
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package        >============================
===>  Building package for seqan-apps-2.4.0
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/compute_gain:No 
such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/fiona:No such 
file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/splazers:No such 
file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/LICENSE:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/README:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/example/reads.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/LICENSE:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/README:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/genome.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/reads.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/reads.fa.result:No
 such file or directory
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/seqan-apps
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