You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: j...@freebsd.org
Ident:          $FreeBSD: head/biology/fastx-toolkit/Makefile 460452 2018-01-31 
01:07:07Z jwb $
Log URL:        
http://beefy11.nyi.freebsd.org/data/head-i386-default/p467547_s332632/logs/fastx_toolkit-0.0.14.log
Build URL:      
http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p467547_s332632
Log:

=>> Building biology/fastx-toolkit
build started at Tue Apr 17 06:53:16 UTC 2018
port directory: /usr/ports/biology/fastx-toolkit
package name: fastx_toolkit-0.0.14
building for: FreeBSD head-i386-default-job-02 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200062 i386
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/fastx-toolkit/Makefile 460452 
2018-01-31 01:07:07Z jwb $
Poudriere version: 3.2.6-1-ga0ae87a0
Host OSVERSION: 1200060
Jail OSVERSION: 1200062
Job Id: 02




!!! Jail is newer than host. (Jail: 1200062, Host: 1200060) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

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PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  
PERL_USE_UNSAFE_INC=1 PKG_CONFIG=pkgconf 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work  
HOME=/wrkdirs/usr/ports/biology/fastx-toolkit/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/fastx-toolkit/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
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#### /usr/local/etc/poudriere.d/make.conf ####
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#### /usr/ports/Mk/Scripts/ports_env.sh ####
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DISABLE_MAKE_JOBS=poudriere
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--End resource limits--
=======================<phase: check-sanity   >============================
===>  License AGPLv3+ accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   fastx_toolkit-0.0.14 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5.txz
[head-i386-default-job-02] Installing pkg-1.10.5...
[head-i386-default-job-02] Extracting pkg-1.10.5: .......... done
===>   fastx_toolkit-0.0.14 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of fastx_toolkit-0.0.14
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License AGPLv3+ accepted by the user
===> Fetching all distfiles required by fastx_toolkit-0.0.14 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License AGPLv3+ accepted by the user
===> Fetching all distfiles required by fastx_toolkit-0.0.14 for building
=> SHA256 Checksum OK for agordon-fastx_toolkit-0.0.14_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License AGPLv3+ accepted by the user
===> Fetching all distfiles required by fastx_toolkit-0.0.14 for building
===>  Extracting for fastx_toolkit-0.0.14
=> SHA256 Checksum OK for agordon-fastx_toolkit-0.0.14_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for fastx_toolkit-0.0.14
===========================================================================
=======================<phase: build-depends  >============================
===>   fastx_toolkit-0.0.14 depends on executable: autoconf-2.69 - not found
===>   Installing existing package /packages/All/autoconf-2.69_1.txz
[head-i386-default-job-02] Installing autoconf-2.69_1...
[head-i386-default-job-02] `-- Installing autoconf-wrapper-20131203...
[head-i386-default-job-02] `-- Extracting autoconf-wrapper-20131203: .......... 
done
[head-i386-default-job-02] `-- Installing indexinfo-0.3.1...
[head-i386-default-job-02] `-- Extracting indexinfo-0.3.1: .... done
[head-i386-default-job-02] `-- Installing m4-1.4.18,1...
[head-i386-default-job-02] `-- Extracting m4-1.4.18,1: .......... done
<snip>
===>   Returning to build of fastx_toolkit-0.0.14
===>   fastx_toolkit-0.0.14 depends on package: pkgconf>=1.3.0_1 - not found
===>   Installing existing package /packages/All/pkgconf-1.4.2,1.txz
[head-i386-default-job-02] Installing pkgconf-1.4.2,1...
[head-i386-default-job-02] Extracting pkgconf-1.4.2,1: .......... done
===>   fastx_toolkit-0.0.14 depends on package: pkgconf>=1.3.0_1 - found
===>   Returning to build of fastx_toolkit-0.0.14
===========================================================================
=======================<phase: lib-depends    >============================
===>   fastx_toolkit-0.0.14 depends on shared library: libgtextutils.so - not 
found
===>   Installing existing package /packages/All/libgtextutils-0.7.txz
[head-i386-default-job-02] Installing libgtextutils-0.7...
[head-i386-default-job-02] Extracting libgtextutils-0.7: .......... done
===>   fastx_toolkit-0.0.14 depends on shared library: libgtextutils.so - found 
(/usr/local/lib/libgtextutils.so)
===>   Returning to build of fastx_toolkit-0.0.14
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for fastx_toolkit-0.0.14
libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'.
libtoolize: copying file 'config/ltmain.sh'
libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'.
libtoolize: copying file 'm4/libtool.m4'
libtoolize: copying file 'm4/ltoptions.m4'
libtoolize: copying file 'm4/ltsugar.m4'
libtoolize: copying file 'm4/ltversion.m4'
libtoolize: copying file 'm4/lt~obsolete.m4'
configure.ac:20: installing 'config/compile'
configure.ac:22: installing 'config/config.guess'
configure.ac:22: installing 'config/config.sub'
configure.ac:18: installing 'config/install-sh'
configure.ac:18: installing 'config/missing'
src/fasta_formatter/Makefile.am: installing 'config/depcomp'
configure: loading site script /usr/ports/Templates/config.site
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p
checking for gawk... (cached) /usr/bin/awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for gcc... cc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether cc accepts -g... yes
checking for cc option to accept ISO C89... none needed
checking whether cc understands -c and -o together... yes
checking for style of include used by make... GNU
checking dependency style of cc... gcc3
checking whether we are using the GNU C++ compiler... yes
checking whether c++ accepts -g... yes
checking dependency style of c++... gcc3
checking build system type... i386-portbld-freebsd12.0
checking host system type... i386-portbld-freebsd12.0
checking how to print strings... printf
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for grep that handles long lines and -e... (cached) /usr/bin/grep
checking for egrep... (cached) /usr/bin/egrep
checking for fgrep... (cached) /usr/bin/fgrep
checking for ld used by cc... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... (cached) 262144
checking how to convert i386-portbld-freebsd12.0 file names to 
i386-portbld-freebsd12.0 format... func_convert_file_noop
checking how to convert i386-portbld-freebsd12.0 file names to toolchain 
format... func_convert_file_noop
checking for /usr/bin/ld option to reload object files... -r
checking for objdump... objdump
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from cc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for mt... mt
checking if mt is a manifest tool... no
checking how to run the C preprocessor... cpp
checking for ANSI C header files... (cached) yes
checking for sys/types.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for memory.h... (cached) yes
checking for strings.h... (cached) yes
checking for inttypes.h... (cached) yes
checking for stdint.h... (cached) yes
checking for unistd.h... (cached) yes
checking for dlfcn.h... (cached) yes
checking for objdir... .libs
checking if cc supports -fno-rtti -fno-exceptions... yes
checking for cc option to produce PIC... -fPIC -DPIC
checking if cc PIC flag -fPIC -DPIC works... yes
checking if cc static flag -static works... yes
checking if cc supports -c -o file.o... yes
checking if cc supports -c -o file.o... (cached) yes
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... freebsd12.0 ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... c++ -E
checking for ld used by c++... /usr/bin/ld
checking if the linker (/usr/bin/ld) is GNU ld... yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking for c++ option to produce PIC... -fPIC -DPIC
checking if c++ PIC flag -fPIC -DPIC works... yes
checking if c++ static flag -static works... yes
checking if c++ supports -c -o file.o... yes
checking if c++ supports -c -o file.o... (cached) yes
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes
checking dynamic linker characteristics... freebsd12.0 ld.so
checking how to hardcode library paths into programs... immediate
checking for long long int... yes
checking for ISO C++ TR1 include files... yes
checking whether c++ supports C++11 features by default... yes
checking pkg-config is at least version 0.9.0... yes
checking for GTEXTUTILS... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating doc/Makefile
config.status: creating m4/Makefile
config.status: creating src/Makefile
config.status: creating src/libfastx/Makefile
config.status: creating src/fastx_clipper/Makefile
config.status: creating src/fastq_to_fasta/Makefile
config.status: creating src/fastx_quality_stats/Makefile
config.status: creating src/fastq_quality_converter/Makefile
config.status: creating src/fastx_trimmer/Makefile
config.status: creating src/fastq_quality_filter/Makefile
config.status: creating src/fastq_quality_trimmer/Makefile
config.status: creating src/fastx_artifacts_filter/Makefile
config.status: creating src/fastx_reverse_complement/Makefile
config.status: creating src/fastx_collapser/Makefile
config.status: creating src/fastx_uncollapser/Makefile
config.status: creating src/seqalign_test/Makefile
config.status: creating src/fasta_formatter/Makefile
config.status: creating src/fasta_nucleotide_changer/Makefile
config.status: creating src/fastx_renamer/Makefile
config.status: creating src/fastq_masker/Makefile
config.status: creating galaxy/Makefile
config.status: creating galaxy/tools/Makefile
config.status: creating galaxy/tools/fastx_toolkit/Makefile
config.status: creating galaxy/test-data/Makefile
config.status: creating galaxy/static/Makefile
config.status: creating galaxy/static/fastx_icons/Makefile
config.status: creating galaxy/tool-data/Makefile
config.status: creating scripts/Makefile
config.status: creating build_scripts/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
===========================================================================
=======================<phase: build          >============================
===>  Building for fastx_toolkit-0.0.14
/usr/bin/make  all-recursive
Making all in m4
Making all in src
Making all in libfastx
cc -DHAVE_CONFIG_H -I. -I../..      -O2 -pipe  -fstack-protector 
-fno-strict-aliasing -Wall -Wextra -Wformat-nonliteral -Wformat-security 
-Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG 
-g -O1 -MT chomp.o -MD -MP -MF .deps/chomp.Tpo -c -o chomp.o chomp.c
mv -f .deps/chomp.Tpo .deps/chomp.Po
cc -DHAVE_CONFIG_H -I. -I../..      -O2 -pipe  -fstack-protector 
-fno-strict-aliasing -Wall -Wextra -Wformat-nonliteral -Wformat-security 
-Wswitch-default -Wswitch-enum -Wunused-parameter -Wfloat-equal -Werror -DDEBUG 
-g -O1 -MT fastx.o -MD -MP -MF .deps/fastx.Tpo -c -o fastx.o fastx.c
fastx.c:29:10: error: the current #pragma pack aligment value is modified in 
the included file [-Werror,-Wpragma-pack]
#include "fastx.h"
         ^
./fastx.h:61:9: note: previous '#pragma pack' directive that modifies alignment 
is here
#pragma pack(1) 
        ^
1 error generated.
*** Error code 1

Stop.
make[4]: stopped in 
/wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14/src/libfastx
*** Error code 1

Stop.
make[3]: stopped in 
/wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14/src
*** Error code 1

Stop.
make[2]: stopped in 
/wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14
*** Error code 1

Stop.
make[1]: stopped in 
/wrkdirs/usr/ports/biology/fastx-toolkit/work/fastx_toolkit-0.0.14
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/fastx-toolkit
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