You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     j...@freebsd.org
Last committer: j...@freebsd.org
Ident:          $FreeBSD: head/biology/plinkseq/Makefile 460452 2018-01-31 
01:07:07Z jwb $
Log URL:        
http://beefy7.nyi.freebsd.org/data/head-mips-default/p472349_s334906/logs/plinkseq-0.10_1.log
Build URL:      
http://beefy7.nyi.freebsd.org/build.html?mastername=head-mips-default&build=p472349_s334906
Log:

=>> Building biology/plinkseq
build started at Thu Jun 14 03:10:00 UTC 2018
port directory: /usr/ports/biology/plinkseq
package name: plinkseq-0.10_1
building for: FreeBSD head-mips-default-job-04 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200067 mips
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: head/biology/plinkseq/Makefile 460452 2018-01-31 
01:07:07Z jwb $
Poudriere version: 3.2.7-1-g7087c444
Host OSVERSION: 1200062
Jail OSVERSION: 1200067
Job Id: 04




!!! Jail is newer than host. (Jail: 1200067, Host: 1200062) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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PORT_FLAGS=
PKGENV=
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DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/plinkseq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/plinkseq/work  
HOME=/wrkdirs/usr/ports/biology/plinkseq/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/plinkseq/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS=" -EB -mabi=32" LIBS=""  
CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/plinkseq"  
EXAMPLESDIR="share/examples/plinkseq"  DATADIR="share/plinkseq"  
WWWDIR="www/plinkseq"  ETCDIR="etc/plinkseq"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/plinkseq 
DOCSDIR=/usr/local/share/doc/plinkseq 
EXAMPLESDIR=/usr/local/share/examples/plinkseq  WWWDIR=/usr/local/www/plinkseq 
ETCDIR=/usr/local/etc/plinkseq
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=mips
MACHINE_ARCH=mips
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 
2007 Free Software Foundation, Inc. This is free software; see the source for 
copying conditions. There is NO warranty; not even for MERCHANTABILITY or 
FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=Using built-in specs. Target: mips-undermydesk-freebsd 
Configured with: FreeBSD/mips system compiler Thread model: posix gcc version 
4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-EB" "-EB" 
"-melf32btsmip_fbsd" "--enable-new-dtags" "-dynamic-linker" 
"/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" 
"/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" 
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CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=cc1: error: unrecognized command line option 
"-std=c11"
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=cc1: error: unrecognized command line option 
"-std=gnu11"
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=cc1plus: error: unrecognized command line option 
"-std=c++0x"
CC_OUTPUT_9d218390_f00456e5=cc1plus: error: unrecognized command line option 
"-std=c++11"
CC_OUTPUT_9d218390_65ad290d=cc1plus: error: unrecognized command line option 
"-std=c++14"
CC_OUTPUT_9d218390_f2776b26=cc1plus: error: unrecognized command line option 
"-std=c++17"
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=cc1plus: error: unrecognized command line option 
"-std=gnu++11"
CC_OUTPUT_9d218390_160933ec=cc1plus: error: unrecognized command line option 
"-std=gnu++14"
CC_OUTPUT_9d218390_fb62803b=cc1plus: error: unrecognized command line option 
"-std=gnu++17"
_OBJC_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright 
(C) 2007 Free Software Foundation, Inc. This is free software; see the source 
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FITNESS FOR A PARTICULAR PURPOSE.
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ARCH=mips
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OSREL=12.0
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CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
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GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
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CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
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LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
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MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
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FLEX=/nxb-bin/usr/bin/flex
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--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  131072
stack size              (kbytes, -s)  8192
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_1.txz
[head-mips-default-job-04] Installing pkg-1.10.5_1...
[head-mips-default-job-04] Extracting pkg-1.10.5_1: .......... done
===>   plinkseq-0.10_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of plinkseq-0.10_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10_1 for building
=> SHA256 Checksum OK for plinkseq-src-0.10.tgz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by plinkseq-0.10_1 for building
===>  Extracting for plinkseq-0.10_1
=> SHA256 Checksum OK for plinkseq-src-0.10.tgz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for plinkseq-0.10_1
===>  Applying FreeBSD patches for plinkseq-0.10_1
/nxb-bin/usr/bin/sed -i.bak  -e 's|PF_INET|AF_INET|g'  
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/mongoose/sources/lib/mongoose.c
/nxb-bin/usr/bin/sed -i.bak  -e 's|g++|/nxb-bin/usr/bin/c++|g'  -e 
's|gcc|/nxb-bin/usr/bin/cc|g'  -e 's|CXXFLAGS = -O3|CXXFLAGS = -O2 -pipe -G0 
-EB -mabi=32 -msoft-float -fno-strict-aliasing |g'  -e 's|ALL_CFLAGS 
=-O3|ALL_CFLAGS = -O2 -pipe -G0 -EB -mabi=32 -msoft-float  
-fno-strict-aliasing|g'  
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/config_defs.Makefile
/nxb-bin/usr/bin/sed -i.bak  -e 's| -ldl||g'  -e 's| $(STATIC_FLAG)||g'  
/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/Makefile
===========================================================================
=======================<phase: build-depends  >============================
===>   plinkseq-0.10_1 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_2.txz
[head-mips-default-job-04] Installing gmake-4.2.1_2...
[head-mips-default-job-04] `-- Installing gettext-runtime-0.19.8.1_1...
[head-mips-default-job-04] |   `-- Installing indexinfo-0.3.1...
[head-mips-default-job-04] |   `-- Extracting indexinfo-0.3.1: .... done
[head-mips-default-job-04] `-- Extracting gettext-runtime-0.19.8.1_1: 
.......... done
[head-mips-default-job-04] Extracting gmake-4.2.1_2: .......... done
===>   plinkseq-0.10_1 depends on executable: gmake - found
===>   Returning to build of plinkseq-0.10_1
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for plinkseq-0.10_1
===========================================================================
=======================<phase: build          >============================
===>  Building for plinkseq-0.10_1
gmake[1]: Entering directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
mkdir -p build/lib
mkdir -p build/execs
making depend sources/execs/pseq.cpp
making depend sources/execs/gcol.cpp
making depend sources/execs/browser.cpp
making depend sources/execs/behead.cpp
making depend sources/execs/mm.cpp
making depend sources/execs/smp.cpp
making depend sources/execs/tab2vcf.cpp
making depend sources/execs/mongoose.cpp
making depend sources/execs/pdas.cpp
/usr/local/bin/gmake ./sources/plinkseq ./sources/pseq ./sources/util 
./sources/mongoose ./sources/browser ./sources/pdas ./sources/ext
gmake[2]: Entering directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
/usr/local/bin/gmake DBGCXXFLAGS="" USE_DEBUG="" -C sources/plinkseq
gmake[3]: Entering directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq'
mkdir -p build/lib
making depend sources/lib/sqlite3.c
making depend sources/lib/network.cpp
making depend sources/lib/seqdb.cpp
making depend sources/lib/genotype.cpp
making depend sources/lib/reffuncs.cpp
making depend sources/lib/r8lib.cpp
making depend sources/lib/statistics.cpp
making depend sources/lib/netfunc.cpp
making depend sources/lib/filemap.cpp
making depend sources/lib/matrix.cpp
making depend sources/lib/allele.cpp
making depend sources/lib/locdb.cpp
making depend sources/lib/vcf.cpp
making depend sources/lib/varmeta.cpp
making depend sources/lib/globals.cpp
making depend sources/lib/dcdflib.cpp
making depend sources/lib/inddb.cpp
making depend sources/lib/eval.cpp
making depend sources/lib/matrix.pb.cpp
In file included from 
../ext/sources/include/google/protobuf/stubs/atomicops.h:59,
                 from ../ext/sources/include/google/protobuf/stubs/once.h:81,
                 from sources/lib/matrix.pb.cpp:10:
./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: 
#error Host architecture was not detected as supported by protobuf
making depend sources/lib/matdb.cpp
making depend sources/lib/segments.cpp
making depend sources/lib/c8lib.cpp
making depend sources/lib/dose.cpp
making depend sources/lib/variant.cpp
making depend sources/lib/varfunc.cpp
making depend sources/lib/indmap.cpp
making depend sources/lib/individual.cpp
making depend sources/lib/annot.cpp
making depend sources/lib/iterate.cpp
making depend sources/lib/crandom.cpp
making depend sources/lib/em.cpp
making depend sources/lib/bed.cpp
making depend sources/lib/vcfiterate.cpp
making depend sources/lib/zfstream.cpp
making depend sources/lib/netdb.cpp
making depend sources/lib/permute.cpp
making depend sources/lib/helper.cpp
making depend sources/lib/glm.cpp
making depend sources/lib/prob.cpp
making depend sources/lib/phmap.cpp
making depend sources/lib/variant.pb.cpp
In file included from 
../ext/sources/include/google/protobuf/stubs/atomicops.h:59,
                 from ../ext/sources/include/google/protobuf/stubs/once.h:81,
                 from sources/lib/variant.pb.cpp:10:
./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: 
#error Host architecture was not detected as supported by protobuf
making depend sources/lib/svar.cpp
making depend sources/lib/output.cpp
making depend sources/lib/vardb.cpp
making depend sources/lib/vgroup.cpp
making depend sources/lib/vcfz.cpp
making depend sources/lib/protdb.cpp
making depend sources/lib/matrix_exponential.cpp
making depend sources/lib/gstore.cpp
making depend sources/lib/mask.cpp
making depend sources/lib/regions.cpp
making depend sources/lib/token.cpp
making depend sources/lib/fisher.cpp
making depend sources/lib/refdb.cpp
making depend sources/lib/meta.cpp
making depend sources/lib/defs.cpp
making depend sources/lib/sqlwrap.cpp
making depend sources/lib/bcf.cpp
making depend sources/lib/bgzf.cpp
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/bgzf.cpp -o build/lib/bgzf.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/bcf.cpp -o build/lib/bcf.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/sqlwrap.cpp -o build/lib/sqlwrap.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/defs.cpp -o build/lib/defs.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/meta.cpp -o build/lib/meta.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/refdb.cpp -o build/lib/refdb.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/fisher.cpp -o build/lib/fisher.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/token.cpp -o build/lib/token.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/regions.cpp -o build/lib/regions.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/mask.cpp -o build/lib/mask.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/gstore.cpp -o build/lib/gstore.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/matrix_exponential.cpp -o build/lib/matrix_exponential.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/protdb.cpp -o build/lib/protdb.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/vcfz.cpp -o build/lib/vcfz.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/vgroup.cpp -o build/lib/vgroup.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/vardb.cpp -o build/lib/vardb.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/output.cpp -o build/lib/output.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/svar.cpp -o build/lib/svar.o
/nxb-bin/usr/bin/c++ -c -O2 -pipe -G0 -EB -mabi=32 -msoft-float 
-fno-strict-aliasing   -I./sources/include -I../ext/sources/include/  
sources/lib/variant.pb.cpp -o build/lib/variant.pb.o
In file included from 
../ext/sources/include/google/protobuf/stubs/atomicops.h:59,
                 from ../ext/sources/include/google/protobuf/stubs/once.h:81,
                 from sources/lib/variant.pb.cpp:10:
./ext/sources/include/google/protobuf/stubs/platform_macros.h:61:2: error: 
#error Host architecture was not detected as supported by protobuf
In file included from ../ext/sources/include/google/protobuf/stubs/once.h:81,
                 from sources/lib/variant.pb.cpp:10:
./ext/sources/include/google/protobuf/stubs/atomicops.h:188: error: stray '#' 
in program
./ext/sources/include/google/protobuf/stubs/atomicops.h:188: error: expected 
constructor, destructor, or type conversion before string constant
gmake[3]: *** [../../config_rules.Makefile:16: build/lib/variant.pb.o] Error 1
gmake[3]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10/sources/plinkseq'
gmake[2]: *** [Makefile:170: sources/plinkseq] Error 2
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
gmake[1]: *** [Makefile:165: all] Error 2
gmake[1]: Leaving directory 
'/wrkdirs/usr/ports/biology/plinkseq/work/plinkseq-0.10'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/plinkseq
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