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Maintainer:     j...@freebsd.org
Last committer: lini...@freebsd.org
Ident:          $FreeBSD: branches/2018Q3/biology/trimadap/Makefile 473009 
2018-06-21 23:52:37Z linimon $
Log URL:        
http://beefy16.nyi.freebsd.org/data/111mips64-quarterly/474466/logs/trimadap-0.1.3.log
Build URL:      
http://beefy16.nyi.freebsd.org/build.html?mastername=111mips64-quarterly&build=474466
Log:

=>> Building biology/trimadap
build started at Thu Jul 12 11:01:36 UTC 2018
port directory: /usr/ports/biology/trimadap
package name: trimadap-0.1.3
building for: FreeBSD 111mips64-quarterly-job-23 11.1-RELEASE-p11 FreeBSD 
11.1-RELEASE-p11 1101001 mips
maintained by: j...@freebsd.org
Makefile ident:      $FreeBSD: branches/2018Q3/biology/trimadap/Makefile 473009 
2018-06-21 23:52:37Z linimon $
Poudriere version: 3.2.7-1-g7087c444
Host OSVERSION: 1200069
Jail OSVERSION: 1101001
Job Id: 23

---Begin Environment---
POUDRIEREPATH=/usr/local/bin/poudriere
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/111mips64-quarterly/ref/.p
SCRIPTPREFIX=/usr/local/share/poudriere
MASTERNAME=111mips64-quarterly
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
PWD=/usr/local/poudriere/data/.m/111mips64-quarterly/ref/.p/pool
SAVED_TERM=
PACKAGE_BUILDING=yes
POUDRIERE_BUILD_TYPE=bulk
MASTERMNT=/usr/local/poudriere/data/.m/111mips64-quarterly/ref
POUDRIERE_VERSION=3.2.7-1-g7087c444
LIBEXECPREFIX=/usr/local/libexec/poudriere
USER=root
QEMU_EMULATING=1
LOCALBASE=/usr/local
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
HOME=/root
STATUS=1
MAIL=/var/mail/root
BLOCKSIZE=K
UNAME_r=11.1-RELEASE-p11
UNAME_v=FreeBSD 11.1-RELEASE-p11 1101001
OSVERSION=1101001
ABI_FILE=/usr/lib/crt1.o
UNAME_m=mips
UNAME_p=mips64
SHELL=/bin/csh
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
j...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/trimadap/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/trimadap/work  
HOME=/wrkdirs/usr/ports/biology/trimadap/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/trimadap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh
--End CONFIGURE_ENV--

--MAKE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/trimadap/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/trimadap/work  
HOME=/wrkdirs/usr/ports/biology/trimadap/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/trimadap/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 
-pipe -G0  -fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  
LDFLAGS="" LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/trimadap"  
EXAMPLESDIR="share/examples/trimadap"  DATADIR="share/trimadap"  
WWWDIR="www/trimadap"  ETCDIR="etc/trimadap"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/trimadap 
DOCSDIR=/usr/local/share/doc/trimadap 
EXAMPLESDIR=/usr/local/share/examples/trimadap  WWWDIR=/usr/local/www/trimadap 
ETCDIR=/usr/local/etc/trimadap
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=mips
MACHINE_ARCH=mips64
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=   true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright (C) 
2007 Free Software Foundation, Inc. This is free software; see the source for 
copying conditions. There is NO warranty; not even for MERCHANTABILITY or 
FITNESS FOR A PARTICULAR PURPOSE.
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=Using built-in specs. Target: mips64-undermydesk-freebsd 
Configured with: FreeBSD/mips64 system compiler Thread model: posix gcc version 
4.2.1 20070831 patched [FreeBSD] "/usr/bin/ld" "--eh-frame-hdr" "-EB" "-EB" 
"-melf64btsmip_fbsd" "--enable-new-dtags" "-dynamic-linker" 
"/libexec/ld-elf.so.1" "/usr/lib/crt1.o" "/usr/lib/crti.o" 
"/usr/lib/crtbegin.o" "-L/usr/lib" "-L/usr/lib" "/dev/null" "-lstdc++" "-lm" 
"-lgcc_s" "-lgcc" "-lc" "-lgcc_s" "-lgcc" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=cc1: error: unrecognized command line option 
"-std=c11"
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=cc1: error: unrecognized command line option 
"-std=gnu11"
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=cc1plus: error: unrecognized command line option 
"-std=c++0x"
CC_OUTPUT_9d218390_f00456e5=cc1plus: error: unrecognized command line option 
"-std=c++11"
CC_OUTPUT_9d218390_65ad290d=cc1plus: error: unrecognized command line option 
"-std=c++14"
CC_OUTPUT_9d218390_f2776b26=cc1plus: error: unrecognized command line option 
"-std=c++17"
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=cc1plus: error: unrecognized command line option 
"-std=gnu++11"
CC_OUTPUT_9d218390_160933ec=cc1plus: error: unrecognized command line option 
"-std=gnu++14"
CC_OUTPUT_9d218390_fb62803b=cc1plus: error: unrecognized command line option 
"-std=gnu++17"
_OBJC_CCVERSION_9d218390=cc (GCC) 4.2.1 20070831 patched [FreeBSD] Copyright 
(C) 2007 Free Software Foundation, Inc. This is free software; see the source 
for copying conditions. There is NO warranty; not even for MERCHANTABILITY or 
FITNESS FOR A PARTICULAR PURPOSE.
_OBJC_ALTCCVERSION_9d218390=none
ARCH=mips64
OPSYS=FreeBSD
_OSRELEASE=11.1-RELEASE-p11
OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  131072
stack size              (kbytes, -s)  8192
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   trimadap-0.1.3 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_1.txz
[111mips64-quarterly-job-23] Installing pkg-1.10.5_1...
[111mips64-quarterly-job-23] Extracting pkg-1.10.5_1: .......... done
===>   trimadap-0.1.3 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of trimadap-0.1.3
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by trimadap-0.1.3 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by trimadap-0.1.3 for building
=> SHA256 Checksum OK for lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by trimadap-0.1.3 for building
===>  Extracting for trimadap-0.1.3
=> SHA256 Checksum OK for lh3-trimadap-0.1-3-gddfef21_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for trimadap-0.1.3
===>  Applying FreeBSD patches for trimadap-0.1.3
===========================================================================
=======================<phase: build-depends  >============================
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for trimadap-0.1.3
===========================================================================
=======================<phase: build          >============================
===>  Building for trimadap-0.1.3
/nxb-bin/usr/bin/cc -O2 -pipe -G0  -fno-strict-aliasing -pthread ksw.c 
kthread.c trimadap-mt.c -o trimadap-mt  -lz -lm
ksw.c:29:23: error: emmintrin.h: No such file or directory
ksw.c:45: error: expected specifier-qualifier-list before '__m128i'
ksw.c: In function 'ksw_qinit':
ksw.c:68: error: 'kswq_t' has no member named 'qp'
ksw.c:68: error: '__m128i' undeclared (first use in this function)
ksw.c:68: error: (Each undeclared identifier is reported only once
ksw.c:68: error: for each function it appears in.)
ksw.c:68: error: expected expression before ')' token
ksw.c:69: error: 'kswq_t' has no member named 'H0'
ksw.c:69: error: 'kswq_t' has no member named 'qp'
ksw.c:70: error: 'kswq_t' has no member named 'H1'
ksw.c:70: error: 'kswq_t' has no member named 'H0'
ksw.c:71: error: 'kswq_t' has no member named 'E'
ksw.c:71: error: 'kswq_t' has no member named 'H1'
ksw.c:72: error: 'kswq_t' has no member named 'Hmax'
ksw.c:72: error: 'kswq_t' has no member named 'E'
ksw.c:86: error: 'kswq_t' has no member named 'qp'
ksw.c:95: error: 'kswq_t' has no member named 'qp'
ksw.c: In function 'ksw_u8':
ksw.c:111: error: '__m128i' undeclared (first use in this function)
ksw.c:111: error: expected ';' before 'zero'
ksw.c:127: error: 'zero' undeclared (first use in this function)
ksw.c:128: error: 'gapoe' undeclared (first use in this function)
ksw.c:129: error: 'gape' undeclared (first use in this function)
ksw.c:130: error: 'shift' undeclared (first use in this function)
ksw.c:131: error: 'H0' undeclared (first use in this function)
ksw.c:131: error: 'kswq_t' has no member named 'H0'
ksw.c:131: error: 'H1' undeclared (first use in this function)
ksw.c:131: error: 'kswq_t' has no member named 'H1'
ksw.c:131: error: 'E' undeclared (first use in this function)
ksw.c:131: error: 'kswq_t' has no member named 'E'
ksw.c:131: error: 'Hmax' undeclared (first use in this function)
ksw.c:131: error: 'kswq_t' has no member named 'Hmax'
ksw.c:141: error: expected ';' before 'e'
ksw.c:142: error: 'h' undeclared (first use in this function)
ksw.c:151: error: 'S' undeclared (first use in this function)
ksw.c:153: error: 'e' undeclared (first use in this function)
ksw.c:155: error: 'f' undeclared (first use in this function)
ksw.c:156: error: 'max' undeclared (first use in this function)
ksw.c: In function 'ksw_i16':
ksw.c:228: error: '__m128i' undeclared (first use in this function)
ksw.c:228: error: expected ';' before 'zero'
ksw.c:243: error: 'zero' undeclared (first use in this function)
ksw.c:244: error: 'gapoe' undeclared (first use in this function)
ksw.c:245: error: 'gape' undeclared (first use in this function)
ksw.c:246: error: 'H0' undeclared (first use in this function)
ksw.c:246: error: 'kswq_t' has no member named 'H0'
ksw.c:246: error: 'H1' undeclared (first use in this function)
ksw.c:246: error: 'kswq_t' has no member named 'H1'
ksw.c:246: error: 'E' undeclared (first use in this function)
ksw.c:246: error: 'kswq_t' has no member named 'E'
ksw.c:246: error: 'Hmax' undeclared (first use in this function)
ksw.c:246: error: 'kswq_t' has no member named 'Hmax'
ksw.c:256: error: expected ';' before 'e'
ksw.c:257: error: 'h' undeclared (first use in this function)
ksw.c:260: error: 'S' undeclared (first use in this function)
ksw.c:261: error: 'e' undeclared (first use in this function)
ksw.c:263: error: 'f' undeclared (first use in this function)
ksw.c:264: error: 'max' undeclared (first use in this function)
*** Error code 1

Stop.
make[1]: stopped in 
/wrkdirs/usr/ports/biology/trimadap/work/trimadap-0.1-3-gddfef21
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/trimadap
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