You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     h2+fbsdpo...@fsfe.org
Last committer: ger...@freebsd.org
Ident:          $FreeBSD: head/biology/seqan-apps/Makefile 475857 2018-07-29 
22:18:44Z gerald $
Log URL:        
http://beefy16.nyi.freebsd.org/data/head-armv7-default/p476715_s337509/logs/seqan-apps-2.4.0_2.log
Build URL:      
http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p476715_s337509
Log:

=>> Building biology/seqan-apps
build started at Sat Aug 11 18:54:58 UTC 2018
port directory: /usr/ports/biology/seqan-apps
package name: seqan-apps-2.4.0_2
building for: FreeBSD head-armv7-default-job-18 12.0-CURRENT FreeBSD 
12.0-CURRENT 1200076 arm
maintained by: h2+fbsdpo...@fsfe.org
Makefile ident:      $FreeBSD: head/biology/seqan-apps/Makefile 475857 
2018-07-29 22:18:44Z gerald $
Poudriere version: 3.2.7-2-g1cf194be
Host OSVERSION: 1200069
Jail OSVERSION: 1200076
Job Id: 18




!!! Jail is newer than host. (Jail: 1200076, Host: 1200069) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
===> The following configuration options are available for seqan-apps-2.4.0_2:
====> Options available for the radio ARCH: you can only select none or one of 
them
     SSE4=off: Use SSE4 and POPCNT instructions
     AVX2=off: Use SSE4, AVX2 and POPCNT instructions
     NATIVE=off: Use all available instruction sets (-march=native)
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
h2+fbsdpo...@fsfe.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/seqan-apps/work  
HOME=/wrkdirs/usr/ports/biology/seqan-apps/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/seqan-apps/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
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DOCSDIR="share/doc/seqan-apps"  EXAMPLESDIR="share/examples/seqan-apps"  
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--End PLIST_SUB--

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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE LGPL3 GPLv3 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   seqan-apps-2.4.0_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_1.txz
[head-armv7-default-job-18] Installing pkg-1.10.5_1...
[head-armv7-default-job-18] Extracting pkg-1.10.5_1: .......... done
===>   seqan-apps-2.4.0_2 depends on file: /usr/local/sbin/pkg - found
<snip>
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/store/store_all.h:1983:9:
   required from 'void 
seqan::convertMatchesToGlobalAlignment(seqan::FragmentStore<TSpec, TConfig>&, 
const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig 
= seqan::FragmentStoreConfig<MyFragStoreConfig>; TScore = seqan::Score<int, 
seqan::Tag<seqan::Simple_> >; TShrinkMatches = seqan::True]'
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1221:40:
   required from 'int seqan::dumpMatches(seqan::FragmentStore<TSpec, TConfig>&, 
TCounts&, seqan::CharString, seqan::RazerSOptions<TSpec>&, const TRazerSMode&) 
[with TFSSpec = MyFragStoreConfig; TFSConfig = 
seqan::FragmentStoreConfig<MyFragStoreConfig>; TCounts = 
seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; 
TRazerSMode = seqan::RazerSMode<seqan::RazerSLocal, seqan::RazerSGapped, 
seqan::RazerSErrors, seqan::NMatchesNone_>; seqan::CharString = 
seqan::String<char, seqan::Alloc<> >]'
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1301:27:
   required from 'int seqan::dumpMatches(seqan::FragmentStore<TSpec, TConfig>&, 
TCounts&, seqan::CharString, seqan::RazerSOptions<TSpec>&, 
seqan::RazerSMode<TAlignMode, TGapMode, seqan::Tag<seqan::Nothing_>, 
TMatchNPolicy>) [with TFSSpec = MyFragStoreConfig; TFSConfig = 
seqan::FragmentStoreConfig<MyFragStoreConfig>; TCounts = 
seqan::String<seqan::String<short unsigned int> >; TSpec = seqan::RazerSSpec<>; 
TAlignMode = seqan::RazerSLocal; TGapMode = seqan::RazerSGapped; TMatchNPolicy 
= seqan::NMatchesNone_; seqan::CharString = seqan::String<char, seqan::Alloc<> 
>]'
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/razers3/outputFormat.h:1345:31:
   required from 'int seqan::dumpMatches(seqan::FragmentStore<TSpec, TConfig>&, 
TCounts&, seqan::CharString, seqan::RazerSOptions<TSpec>&) [with TFSSpec = 
MyFragStoreConfig; TFSConfig = seqan::FragmentStoreConfig<MyFragStoreConfig>; 
TCounts = seqan::String<seqan::String<short unsigned int> >; TSpec = 
seqan::RazerSSpec<>; seqan::CharString = seqan::String<char, seqan::Alloc<> >]'
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:257:20:
   required from 'int mapReads(seqan::StringSet<seqan::String<char, 
seqan::Alloc<> > >&, seqan::StringSet<seqan::String<char, seqan::Alloc<> > >&, 
seqan::RazerSOptions<TSpec>&) [with TSpec = seqan::RazerSSpec<>]'
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/razers3/razers.cpp:866:66:
   required from here
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include/seqan/basic/debug_test_system.h:939:18:
 warning: comparison between signed and unsigned integer expressions 
[-Wsign-compare]
     if (!(value1 == value2))
          ~~~~~~~~^~~~~~~~~~
[132/133] /usr/local/bin/g++7  -DSEQAN_APP_VERSION=\"3.5.8\" -DSEQAN_DATE=\"\" 
-DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 
-DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 
-D_GLIBCXX_USE_C99=1 -D_LARGEFILE_SOURCE 
-I/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/include -O2 
-pipe  -Wl,-rpath=/usr/local/lib/gcc7  -Wl,-rpath=/usr/local/lib/gcc7  -W -Wall 
-pedantic -fopenmp -O2 -pipe  -Wl,-rpath=/usr/local/lib/gcc7  
-Wl,-rpath=/usr/local/lib/gcc7    -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT 
apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF 
apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o 
apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -c 
/wrkdirs/usr/ports/biology/seqan-apps/work/seqan-seqan-v2.4.0/apps/razers3/param_tabs.cpp
[133/133] : && /usr/local/bin/g++7  -O2 -pipe  -Wl,-rpath=/usr/local/lib/gcc7  
-Wl,-rpath=/usr/local/lib/gcc7  -W -Wall -pedantic -fopenmp -O2 -pipe  
-Wl,-rpath=/usr/local/lib/gcc7  -Wl,-rpath=/usr/local/lib/gcc7  
-Wl,-rpath=/usr/local/lib/gcc7 -L/usr/local/lib/gcc7 -s -Wl,--whole-archive 
-lpthread -Wl,--no-whole-archive 
apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o 
apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o  -o bin/razers3  
-lexecinfo -lelf -lz -lbz2 && :
===========================================================================
=======================<phase: run-depends    >============================
===>   seqan-apps-2.4.0_2 depends on executable: gcc7 - found
===========================================================================
=======================<phase: stage          >============================
===>  Staging for seqan-apps-2.4.0_2
===>   Generating temporary packing list
[0/1] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build && 
/usr/local/bin/cmake -DCMAKE_INSTALL_DO_STRIP=1 -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/alf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/alf/example/small.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bisar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/casbar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/four2three
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/bs_tools/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/bs_tools/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/dfi
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/example/fasta1.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/dfi/example/fasta2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/fx_bam_coverage
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fx_tools/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fx_tools/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gustaf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gustaf_mate_joining
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno_modified.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/adeno_modified_reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/gustaf/example/stellar.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/insegt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/annoOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/annotations.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/readOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/insegt/example/tupleOutput.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_frag_sequencing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_genome
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_materializer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_methylation
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_simulator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_splicing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/mason_variator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_frag_sequencing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_genome
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_materializer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_methylation
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_simulator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_splicing
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/README.mason_variator
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/mason2/example/adeno_virus.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/micro_razers
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/micro_razers/example/reads.fa.result
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bam2roi
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_feature_projection
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_plot_thumbnails
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/bed_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/gff_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_sort.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/roi_plot_9.sh
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/plot.awk
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/ps2pswLinks.gawk
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/dmel.bed
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/dmel.gtf
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/example/example.bam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/R/ngsroi_0.1.tar.gz
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/ngs_roi/R/ngsroi_0.1.zip
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/pair_align
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/pair_align/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/pair_align/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/param_chooser
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/param_chooser/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/param_chooser/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_prepare_sam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_build_gold_standard
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_evaluate
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_prepare_sam
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_build_gold_standard
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rabema_evaluate
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rabema/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rabema/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/razers
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers/example/reads2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/razers3
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/genome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/reads.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/razers3/example/reads2.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/rep_sep
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rep_sep/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/rep_sep/README
[1/2] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=txt > 
README.sak.txt
FAILED: apps/sak/README.sak.txt 
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=txt > 
README.sak.txt
<jemalloc>: jemalloc_tsd.c:153: Failed assertion: "tsd->state == 
tsd_state_reincarnated"
[2/2] cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=man > 
sak.1
FAILED: apps/sak/sak.1 
cd /wrkdirs/usr/ports/biology/seqan-apps/work/.build/apps/sak && 
/wrkdirs/usr/ports/biology/seqan-apps/work/.build/bin/sak --export-help=man > 
sak.1
<jemalloc>: jemalloc_tsd.c:153: Failed assertion: "tsd->state == 
tsd_state_reincarnated"
ninja: build stopped: subcommand failed.
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sak
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sak/README.sak.txt
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/man/man1/sak.1
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sam2matrix
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sam2matrix/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sam2matrix/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/samcat
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/samcat/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/samcat/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/s4_search
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/s4_join
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/searchjoin/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/searchjoin/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/seqan_tcoffee
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqan_tcoffee/example/seq.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/seqcons2
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqcons2/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/seqcons2/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/sgip
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_m2D_m196.A01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.A00
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.A01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.B00
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/iso_r01_m200.B01
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/latin-4
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/lattice-4
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/sgip/example/sts-7
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/snp_store
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/example/exampleGenome.fa
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/snp_store/example/exampleReads.gff
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/stellar
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/NC_001474.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/NC_001477.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/stellar/example/reads.fasta
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/tree_recon
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/README
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/tree_recon/example/example.dist
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/yara_indexer
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/yara_mapper
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/yara/LICENSE
-- Installing: 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/yara/README.rst
====> Compressing man pages (compress-man)
===========================================================================
=======================<phase: package        >============================
===>  Building package for seqan-apps-2.4.0_2
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/compute_gain:No 
such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/fiona:No such 
file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/bin/splazers:No such 
file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/LICENSE:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/README:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/fiona/example/reads.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/LICENSE:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/README:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/genome.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/reads.fa:No
 such file or directory
pkg-static: Unable to access file 
/wrkdirs/usr/ports/biology/seqan-apps/work/stage/usr/local/share/doc/splazers/example/reads.fa.result:No
 such file or directory
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/seqan-apps
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