You are receiving this mail as a port that you maintain
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Please investigate the failure and submit a PR to fix
build.

Maintainer:     y...@freebsd.org
Last committer: lini...@freebsd.org
Ident:          $FreeBSD: branches/2018Q3/biology/ngs-sdk/Makefile 473291 
2018-06-25 05:04:46Z linimon $
Log URL:        
http://beefy15.nyi.freebsd.org/data/111armv6-quarterly/476922/logs/ngs-sdk-2.9.1.log
Build URL:      
http://beefy15.nyi.freebsd.org/build.html?mastername=111armv6-quarterly&build=476922
Log:

=>> Building biology/ngs-sdk
build started at Sun Aug 12 05:06:30 UTC 2018
port directory: /usr/ports/biology/ngs-sdk
package name: ngs-sdk-2.9.1
building for: FreeBSD 111armv6-quarterly-job-16 11.1-RELEASE-p12 FreeBSD 
11.1-RELEASE-p12 1101001 arm
maintained by: y...@freebsd.org
Makefile ident:      $FreeBSD: branches/2018Q3/biology/ngs-sdk/Makefile 473291 
2018-06-25 05:04:46Z linimon $
Poudriere version: 3.2.7-2-g1cf194be
Host OSVERSION: 1200069
Jail OSVERSION: 1101001
Job Id: 16

---Begin Environment---
POUDRIEREPATH=/usr/local/bin/poudriere
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
OLDPWD=/usr/local/poudriere/data/.m/111armv6-quarterly/ref/.p
SCRIPTPREFIX=/usr/local/share/poudriere
MASTERNAME=111armv6-quarterly
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
PWD=/usr/local/poudriere/data/.m/111armv6-quarterly/ref/.p/pool
SAVED_TERM=
PACKAGE_BUILDING=yes
POUDRIERE_BUILD_TYPE=bulk
MASTERMNT=/usr/local/poudriere/data/.m/111armv6-quarterly/ref
POUDRIERE_VERSION=3.2.7-2-g1cf194be
LIBEXECPREFIX=/usr/local/libexec/poudriere
USER=root
QEMU_EMULATING=1
LOCALBASE=/usr/local
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
HOME=/root
STATUS=1
MAIL=/var/mail/root
BLOCKSIZE=K
UNAME_r=11.1-RELEASE-p12
UNAME_v=FreeBSD 11.1-RELEASE-p12 1101001
OSVERSION=1101001
ABI_FILE=/usr/lib/crt1.o
UNAME_m=arm
UNAME_p=armv6
SHELL=/bin/csh
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
---End OPTIONS List---

--MAINTAINER--
y...@freebsd.org
--End MAINTAINER--

--CONFIGURE_ARGS--
--prefix=/usr/local ${_LATE_CONFIGURE_ARGS}
--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl 
ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 
XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  
HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 SHELL=/bin/sh CONFIG_SHELL=/bin/sh 
CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144
--End CONFIGURE_ENV--

--MAKE_ENV--
PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  
XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work  
HOME=/wrkdirs/usr/ports/biology/ngs-sdk/work TMPDIR="/tmp" 
PATH=/wrkdirs/usr/ports/biology/ngs-sdk/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
 NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES 
PREFIX=/usr/local  LOCALBASE=/usr/local  CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 
-pipe  
-I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1/ngs-sdk/ngs/unix/armv6/ 
-fno-strict-aliasing"  CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS=""  LDFLAGS="" 
LIBS=""  CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe 
-I/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1/ngs-sdk/ngs/unix/armv6/ 
-fno-strict-aliasing "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s 
-m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 
555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN="install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PORTEXAMPLES="" OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local  
RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.26.2  PERL_VER=5.26  
PERL5_MAN1=lib/perl5/site_perl/man/man1  
PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  
SITE_ARCH=lib/perl5/site_perl/mach/5.26 DOCSDIR="share/doc/ngs"  
EXAMPLESDIR="share/examples/ngs"  DATADIR="share/ngs"  WWWDIR="www/ngs"  
ETCDIR="etc/ngs"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/ngs 
DOCSDIR=/usr/local/share/doc/ngs EXAMPLESDIR=/usr/local/share/examples/ngs  
WWWDIR=/usr/local/www/ngs ETCDIR=/usr/local/etc/ngs
--End SUB_LIST--

---Begin make.conf---
.sinclude "/etc/make.nxb.conf"
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=arm
MACHINE_ARCH=armv6
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

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# Disable build of llib now that head no longer has lint(1)
LINT=   true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_9d218390=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) 
(based on LLVM 4.0.0) Target: armv6-unknown-freebsd11.1-gnueabihf Thread model: 
posix InstalledDir: /nxb-bin/usr/bin
_ALTCCVERSION_9d218390=none
_CXXINTERNAL_9c45a5b1=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 
297347) (based on LLVM 4.0.0) Target: armv6-unknown-freebsd11.1-gnueabihf 
Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" 
"--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" 
"--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" 
"/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" 
"--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" 
"--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_9d218390_58173849=yes
CC_OUTPUT_9d218390_9bdba57c=yes
CC_OUTPUT_9d218390_6a4fe7f5=yes
CC_OUTPUT_9d218390_6bcac02b=yes
CC_OUTPUT_9d218390_67d20829=yes
CC_OUTPUT_9d218390_bfa62e83=yes
CC_OUTPUT_9d218390_f0b4d593=yes
CC_OUTPUT_9d218390_308abb44=yes
CC_OUTPUT_9d218390_f00456e5=yes
CC_OUTPUT_9d218390_65ad290d=yes
CC_OUTPUT_9d218390_f2776b26=error: invalid value 'c++17' in '-std=c++17'
CC_OUTPUT_9d218390_b2657cc3=yes
CC_OUTPUT_9d218390_380987f7=yes
CC_OUTPUT_9d218390_160933ec=yes
CC_OUTPUT_9d218390_fb62803b=error: invalid value 'gnu++17' in '-std=gnu++17'
_OBJC_CCVERSION_9d218390=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 
297347) (based on LLVM 4.0.0) Target: armv6-unknown-freebsd11.1-gnueabihf 
Thread model: posix InstalledDir: /nxb-bin/usr/bin
_OBJC_ALTCCVERSION_9d218390=none
ARCH=armv6
OPSYS=FreeBSD
_OSRELEASE=11.1-RELEASE-p12
OSREL=11.1
OSVERSION=1101001
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
---Begin make.nxb.conf---
CC=/nxb-bin/usr/bin/cc
CPP=/nxb-bin/usr/bin/cpp
CXX=/nxb-bin/usr/bin/c++
AS=/nxb-bin/usr/bin/as
NM=/nxb-bin/usr/bin/nm
LD=/nxb-bin/usr/bin/ld
OBJCOPY=/nxb-bin/usr/bin/objcopy
SIZE=/nxb-bin/usr/bin/size
STRIPBIN=/nxb-bin/usr/bin/strip
SED=/nxb-bin/usr/bin/sed
RANLIB=/nxb-bin/usr/bin/ranlib
YACC=/nxb-bin/usr/bin/yacc
MAKE=/nxb-bin/usr/bin/make
STRINGS=/nxb-bin/usr/bin/strings
AWK=/nxb-bin/usr/bin/awk
FLEX=/nxb-bin/usr/bin/flex
---End make.nxb.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  33554432
stack size              (kbytes, -s)  524288
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License PD accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   ngs-sdk-2.9.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_1.txz
[111armv6-quarterly-job-16] Installing pkg-1.10.5_1...
[111armv6-quarterly-job-16] Extracting pkg-1.10.5_1: .......... done
===>   ngs-sdk-2.9.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of ngs-sdk-2.9.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.9.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.9.1 for building
=> SHA256 Checksum OK for ncbi-ngs-2.9.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License PD accepted by the user
===> Fetching all distfiles required by ngs-sdk-2.9.1 for building
===>  Extracting for ngs-sdk-2.9.1
=> SHA256 Checksum OK for ncbi-ngs-2.9.1_GH0.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for ngs-sdk-2.9.1
===>  Applying FreeBSD patches for ngs-sdk-2.9.1
===========================================================================
=======================<phase: build-depends  >============================
===>   ngs-sdk-2.9.1 depends on executable: gmake - not found
===>   Installing existing package /packages/All/gmake-4.2.1_2.txz
[111armv6-quarterly-job-16] Installing gmake-4.2.1_2...
[111armv6-quarterly-job-16] `-- Installing gettext-runtime-0.19.8.1_1...
[111armv6-quarterly-job-16] |   `-- Installing indexinfo-0.3.1...
[111armv6-quarterly-job-16] |   `-- Extracting indexinfo-0.3.1: .... done
[111armv6-quarterly-job-16] `-- Extracting gettext-runtime-0.19.8.1_1: 
.......... done
[111armv6-quarterly-job-16] Extracting gmake-4.2.1_2: .......... done
===>   ngs-sdk-2.9.1 depends on executable: gmake - found
===>   Returning to build of ngs-sdk-2.9.1
===>   ngs-sdk-2.9.1 depends on package: perl5>=5.26<5.27 - not found
===>   Installing existing package /packages/All/perl5-5.26.2.txz
[111armv6-quarterly-job-16] Installing perl5-5.26.2...
[111armv6-quarterly-job-16] Extracting perl5-5.26.2: .......... done
Message from perl5-5.26.2:

The /usr/bin/perl symlink has been removed starting with Perl 5.20.
For shebangs, you should either use:

#!/usr/local/bin/perl

or

#!/usr/bin/env perl

The first one will only work if you have a /usr/local/bin/perl,
the second will work as long as perl is in PATH.
===>   ngs-sdk-2.9.1 depends on package: perl5>=5.26<5.27 - found
===>   Returning to build of ngs-sdk-2.9.1
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for ngs-sdk-2.9.1
CONFIGURING ngs-sdk
Configuring NGS-SDK package
checking system type... FreeBSD
checking machine architecture... arm
configure: error: unsupported architecture 'FreeBSD'

===========================================================================
=======================<phase: build          >============================
===>  Building for ngs-sdk-2.9.1
gmake[1]: Entering directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1'
gmake[2]: Entering directory 
'/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1/ngs-sdk'
*** File 'Makefile.config.FreeBSD.arm' is missing. Please run ./configure
gmake[2]: *** 
[/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1/ngs-sdk/Makefile.rules:72: 
Makefile.config.FreeBSD.arm] Error 1
gmake[2]: Leaving directory 
'/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1/ngs-sdk'
gmake[1]: *** [Makefile:52: ngs-sdk] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ngs-sdk/work/ngs-2.9.1'
*** Error code 1

Stop.
make: stopped in /usr/ports/biology/ngs-sdk
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