up in the 'C' column of top after I've rebooted with the newly compiled
kernel.


Run top with the -S argument. You should then see two "idle"
processes, one for each CPU:

  11 root          1 171   52     0K     8K CPU0   0  72.1H 91.70% idle: cpu0
  10 root          1 171   52     0K     8K RUN    1  72.2H 90.97% idle: cpu1

Can you confirm whether you see that or not? I do not have APIC_IO in
my kernel either, and it is showing both cores in top (Core 2 Duo
CPU).

Regards,
Josh
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