and it failed
when run complaining that it needs a "CPU with SSE instuctions enabled".
does anyone know what this is and related too?

are you CPU SSE capable? if so, probably this app checks capabilities through /proc

add this to /etc/fstab
linprocfs               /compat/linux/proc  linprocfs       rw      0       0

and mount /compat/linux/proc

2nd question, is the freebsd base (usr/src) documented anywhere, as to the programs it entirely contains?

exactly those what gets installed :)
it contains sources of whole FreeBSD system (excluding ports).

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