On 01/07/10 01:41, Pieter de Goeje wrote:
On Wednesday 06 January 2010 14:14:28 O. Hartmann wrote:
Dear Sirs,
We use a software package for scientific imagery processing from USGS,
ISIS3 (http://isis.astrogeology.usgs.gov/). The most recent version is
3.1.21 and since this version, the software intensively uses
libprotobuf.so.
While we can use ISIS 3.1.20 very well under FreeBSD 8.0/amd64, it is
impossible to use the software with version no. 3.1.21, which seems to
have some issues wih libprotobuf.so. Every client out of this ISIS3
package crashes with a segmentation fault and as far as I can judge the
situation, there is a problem with libprotobuf.so, against which all
clients out of ISIS 3.1.21 are linked.
Perhaps the ISIS package was developed using a different (older?) version of
Google's protocol buffers. Compiling protobuf from source is quite easy on
FreeBSD. You can find the source here:
http://code.google.com/p/protobuf/downloads/list
I would start by trying version 2.1.0 and 2.2.0a.
I searched for help on the ISIS3-support forum and realised that some
Apple OS X guys have had similar problems, but those threads where
closed immediately or got relative senseless response.
In our case, we compile every necessary library and prerequisite
software package (mostly Qt4 libs) from ports. This works great with
some tweaks for FreeBSD in make/config.freebsd (which I derived from
some linux and/or OS X config files).
Now I'm floating like a dead man i the water. Below I provide q gdb
output of the qview-client (the same is with all other clients, like
photrim etc. for those familiar with the software package).
A backtrace ('bt' at the gdb prompt) might contain more useful information.
Additionaly, I provide a truss-output, that stops at mmap issues.
Well, if someone could provide me with some advance debugging hints I
would appreaciate them. I'm pretty sure he problem is located within the
libprotobuf library or the way it is treated, but this is a guess of a
non-developer.
Thanks very much in advance.
Please reply also to this email address, since I'm not subscriber of the
list I post to.
Oliver
- Pieter
Hello Pieter,
ISIS3 utilises the very same revision of libprotobuf as FreeBSD has in
the ports repositorium (libprotobuf.so.4.0.0, aka protobuf-2.2.0). The
backtrace follows, it is a little bit lengthy ...
(gdb) bt
#0 0x0000000805a2f2c8 in std::_Rb_tree<std::string,
std::pair<std::string const, std::pair<void const*, int> >,
std::_Select1st<std::pair<std:: tring const, std::pair<void const*, int>
> >, std::less<std::string>, std::allocator<std::pair<std::string
const, std::pair<void const*, int> > >::_M_insert_unique () from
/usr/local/lib/libprotobuf.so.4
#1 0x0000000805a326c6 in
google::protobuf::InsertIfNotPresent<std::map<std::string,
std::pair<void const*, int>, std::less<std::string>, std::a
locator<std::pair<std::string const, std::pair<void const*, int> > > >,
std::string, std::pair<void const*, int> > ()
from /usr/local/lib/libprotobuf.so.4
#2 0x0000000805a32d4f in
google::protobuf::SimpleDescriptorDatabase::DescriptorIndex<std::pair<void
const*, int> >::AddFile ()
from /usr/local/lib/libprotobuf.so.4
#3 0x0000000805a2df86 in
google::protobuf::EncodedDescriptorDatabase::Add () from
/usr/local/lib/libprotobuf.so.4
#4 0x00000008059ed8fd in
google::protobuf::DescriptorPool::InternalAddGeneratedFile () from
/usr/local/lib/libprotobuf.so.4
#5 0x0000000805a16218 in
google::protobuf::protobuf_AddDesc_google_2fprotobuf_2fdescriptor_2eproto ()
from /usr/local/lib/libprotobuf.so.4
#6 0x0000000805a168a5 in __static_initialization_and_destruction_0 ()
from /usr/local/lib/libprotobuf.so.4
#7 0x0000000805a64aab in __do_global_ctors_aux () from
/usr/local/lib/libprotobuf.so.4
#8 0x00000008059d00f6 in _init () from /usr/local/lib/libprotobuf.so.4
#9 0x000000080064bc70 in ?? () from /libexec/ld-elf.so.1
#10 0x000000080052582b in dlsym () from /libexec/ld-elf.so.1
#11 0x0000000800526b85 in dlopen () from /libexec/ld-elf.so.1
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#444 0x0000000000000000 in ?? ()
#445 0x0000000000000000 in ?? ()
#446 0x0000000000000000 in ?? ()
#447 0x0000000000000000 in ?? ()
#448 0x0000000000000000 in ?? ()
#449 0x0000000000000000 in ?? ()
#450 0x0000000000000000 in ?? ()
#451 0x0000000000000000 in ?? ()
#452 0x0000000000000000 in ?? ()
#453 0x0000000000000000 in ?? ()
#454 0x0000000000000000 in ?? ()
#455 0x0000000000000000 in ?? ()
#456 0x0000000000000000 in ?? ()
#457 0x0000000000000000 in ?? ()
#458 0x0000000000000000 in ?? ()
#459 0x0000000000000000 in ?? ()
#460 0x0000000000000000 in ?? ()
#461 0x0000000000000000 in ?? ()
#462 0x0000000000000000 in ?? ()
#463 0x0000000000000000 in ?? ()
#464 0x0000000000000000 in ?? ()
#465 0x0000000000000000 in ?? ()
#466 0x0000000000000000 in ?? ()
#467 0x0000000000000000 in ?? ()
#468 0x0000000000000000 in ?? ()
#469 0x0000000000000000 in ?? ()
#470 0x0000000000000000 in ?? ()
#471 0x0000000000000000 in ?? ()
#472 0x0000000000000000 in ?? ()
#473 0x0000000000000000 in ?? ()
#474 0x0000000000000000 in ?? ()
#475 0x0000000000000000 in ?? ()
#476 0x0000000000000000 in ?? ()
#477 0x0000000000000000 in ?? ()
#478 0x0000000000000000 in ?? ()
#479 0x0000000000000000 in ?? ()
#480 0x0000000000000000 in ?? ()
#481 0x0000000000000000 in ?? ()
#482 0x0000000000000000 in ?? ()
#483 0x0000000000000000 in ?? ()
#484 0x0000000000000000 in ?? ()
---Type <return> to continue, or q <return> to quit---
#485 0x0000000000000000 in ?? ()
#486 0x0000000000000000 in ?? ()
#487 0x0000000000000000 in ?? ()
[...] SNIP (#488 - #876 ==>> 0x0000000000000000 in ?? ()
---Type <return> to continue, or q <return> to quit---
#877 0x0000000000000000 in ?? ()
#878 0x0000000000000000 in ?? ()
#879 0x0000000000000000 in ?? ()
#880 0x0000000000000000 in ?? ()
#881 0x0000000000000000 in ?? ()
#882 0x0000000000000000 in ?? ()
#883 0x0000000000000000 in ?? ()
#884 0x2f00000000000000 in ?? ()
#885 0x61636f6c2f727375 in ?? ()
#886 0x332f736973692f6c in ?? ()
#887 0x69622f31322e312e in ?? ()
#888 0x0077656976712f6e in ?? ()
#889 0x247c8d48002454ff in ?? ()
#890 0x01a1c0c748006a10 in ?? ()
#891 0x66fdebf4050f0000 in ?? ()
#892 0x9066669066669066 in ?? ()
#893 0x00007fffffffe488 in ?? ()
#894 0x0000000000000001 in ?? ()
#895 0x00007fffffffe498 in ?? ()
#896 0x000000000000002b in ?? ()
Cannot access memory at address 0x800000000000
(gdb)
--
Oliver Hartmann
Freie Universitaet Berlin
Planetologie und Fernerkundung
Malteserstr. 74 - 100/Haus D
D-12249 Berlin
Tel.: +49 (0) 30 838 70 508
FAX: +49 (0) 30 838 70 539
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