We have 16.04 working here.  We had to make changes to the following files
/etc/nsswitch.conf
/etc/ipa/default.conf
/etc/krb5.conf
/etc/ldap/ldap.conf
/etc/sssd/sssd.conf
/usr/share/pam-configs/mkhomedir

I'm guessing your nsswitch.conf is prob the issue if I had to guess.  Here is 
what ours looks like
#---------------------------------------
passwd:         compat sss
group:          compat sss
shadow:         compat

hosts:          files dns
networks:       files

protocols:      db files
services:       db sss files
ethers:         db files
rpc:            db files

netgroup:       sss
sudoers:        sss files
#---------------------------------------
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