Okay I am making some progress with this, currently just trying to get one 
server running before I add any failover. Thanks for the help so far.
Currently the freeipa server "ipa1" (ipa1.intra.example.com) seems to be 
working it can resolve hosts on the LAN either with a short hostname or a fqdn 
hostname.

[root@ipa1 ~]# nslookup
> frisell
Server:         127.0.0.1
Address:        127.0.0.1#53

Name:   frisell.intra.example.com
Address: 10.1.10.193
> frisell.intra.example.com
Server:         127.0.0.1
Address:        127.0.0.1#53

Name:   frisell.intra.example.com
Address: 10.1.10.193
>
==> so far so good.
However on another computer on the network, the same thing doesn't work even 
though it is asking the same DNS server (10.1.10.15 = ipa1)

jdunham@mahavishnu:~$ nslookup
> ipa1
Server:         10.1.10.15
Address:        10.1.10.15#53

** server can't find ipa1: NXDOMAIN
> ipa.intra.example.com
Server:         10.1.10.15
Address:        10.1.10.15#53

** server can't find ipa.intra.example.com: NXDOMAIN
> ipa1.intra.example.com
Server:         10.1.10.15
Address:        10.1.10.15#53

Name:   ipa1.intra.example.com
Address: 10.1.10.15
> frisell
Server:         10.1.10.15
Address:        10.1.10.15#53

** server can't find frisell: NXDOMAIN
> frisell.intra.example.com
Server:         10.1.10.15
Address:        10.1.10.15#53

Name:   frisell.intra.example.com
Address: 10.1.10.193

It this a client problem or a server problem?
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